Magnesium in PDB 8efk: Structure of Lates Calcarifer Dna Polymerase Theta Polymerase Domain with Hairpin Dna

The binding sites of Magnesium atom in the Structure of Lates Calcarifer Dna Polymerase Theta Polymerase Domain with Hairpin Dna (pdb code 8efk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Lates Calcarifer Dna Polymerase Theta Polymerase Domain with Hairpin Dna, PDB code: 8efk:

Magnesium binding site 1 out of 1 in the Structure of Lates Calcarifer Dna Polymerase Theta Polymerase Domain with Hairpin Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Lates Calcarifer Dna Polymerase Theta Polymerase Domain with Hairpin Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2801 b:42.3 occ:0.50 OD1 A:ASP2463 2.2 50.0 1.0 O2B A:DDS2802 2.2 42.7 0.8 OD2 A:ASP2664 2.3 49.3 1.0 O A:TYR2464 2.7 44.5 1.0 CG A:ASP2463 2.9 50.0 1.0 OD2 A:ASP2463 3.0 50.0 1.0 O3G A:DDS2802 3.0 42.7 0.8 O2A A:DDS2802 3.2 42.7 0.8 CG A:ASP2664 3.5 49.3 1.0 PB A:DDS2802 3.6 42.7 0.8 C A:TYR2464 3.9 44.5 1.0 CB A:ASP2664 4.1 49.3 1.0 O3B A:DDS2802 4.2 42.7 0.8 PG A:DDS2802 4.2 42.7 0.8 O3A A:DDS2802 4.2 42.7 0.8 PA A:DDS2802 4.2 42.7 0.8 C5' A:DDS2802 4.2 42.7 0.8 N A:TYR2464 4.3 44.5 1.0 CB A:ASP2463 4.4 50.0 1.0 OD1 A:ASP2664 4.5 49.3 1.0 CA A:TYR2464 4.6 44.5 1.0 NZ A:LYS2699 4.6 51.2 1.0 O1B A:DDS2802 4.7 42.7 0.8 O5' A:DDS2802 4.7 42.7 0.8 C A:ASP2463 4.8 50.0 1.0 O2G A:DDS2802 4.8 42.7 0.8 N A:GLN2466 4.8 45.0 1.0 N A:SER2465 4.8 45.7 1.0 CA A:SER2465 5.0 45.7 1.0 CA A:ASP2463 5.0 50.0 1.0

C.Li, H.Zhu, S.Jin, L.M.Naksoud, N.Jain, J.Sun, Y.Gao. Structural Basis of Dna Polymerase Theta Mediated Dna End Joining To Be Published.