Magnesium in PDB 8eg8: Cryo-Em Structure of Consensus Elemental Paused Elongation Complex with A Folded Tl

Enzymatic activity of Cryo-Em Structure of Consensus Elemental Paused Elongation Complex with A Folded Tl

All present enzymatic activity of Cryo-Em Structure of Consensus Elemental Paused Elongation Complex with A Folded Tl:
2.7.7.6;

Other elements in 8eg8:

The structure of Cryo-Em Structure of Consensus Elemental Paused Elongation Complex with A Folded Tl also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Consensus Elemental Paused Elongation Complex with A Folded Tl (pdb code 8eg8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Consensus Elemental Paused Elongation Complex with A Folded Tl, PDB code: 8eg8:

Magnesium binding site 1 out of 1 in 8eg8

Go back to Magnesium Binding Sites List in 8eg8
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Consensus Elemental Paused Elongation Complex with A Folded Tl


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Consensus Elemental Paused Elongation Complex with A Folded Tl within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1501

b:24.7
occ:1.00
OD1 J:ASP460 2.1 23.8 1.0
OP1 R:C17 2.1 21.9 1.0
OD1 J:ASP464 2.1 26.6 1.0
OD1 J:ASP462 2.1 23.5 1.0
O3' R:G16 2.1 27.0 1.0
P R:C17 2.5 21.9 1.0
CG J:ASP460 2.7 23.8 1.0
OD2 J:ASP460 2.7 23.8 1.0
CG J:ASP464 2.9 26.6 1.0
CG J:ASP462 3.0 23.5 1.0
OD2 J:ASP464 3.1 26.6 1.0
O5' R:C17 3.2 21.9 1.0
OD2 J:ASP462 3.3 23.5 1.0
C3' R:G16 3.4 27.0 1.0
C4' R:G16 3.8 27.0 1.0
OP2 R:C17 3.9 21.9 1.0
O2' R:G16 3.9 27.0 1.0
CB J:ASP460 4.1 23.8 1.0
C2' R:G16 4.2 27.0 1.0
O J:ASP460 4.2 23.8 1.0
C5' R:G16 4.3 27.0 1.0
CB J:ASP464 4.3 26.6 1.0
CB J:ASP462 4.4 23.5 1.0
C J:ASP460 4.5 23.8 1.0
N J:ASP462 4.5 23.5 1.0
C5' R:C17 4.5 21.9 1.0
N J:ASP460 4.6 23.8 1.0
N J:ASP464 4.6 26.6 1.0
CA J:ASP460 4.6 23.8 1.0
C J:ASP462 4.7 23.5 1.0
O J:ASP462 4.7 23.5 1.0
CA J:ASP462 4.8 23.5 1.0
CA J:ASP464 4.8 26.6 1.0
NH2 J:ARG425 5.0 27.6 1.0

Reference:

J.Y.Kang, T.V.Mishanina, Y.Bao, J.Chen, E.Llewellyn, J.Liu, S.A.Darst, R.Landick. An Ensemble of Interconverting Conformations of the Elemental Paused Transcription Complex Creates Regulatory Options. Proc.Natl.Acad.Sci.Usa V. 120 45120 2023.
ISSN: ESSN 1091-6490
PubMed: 36795753
DOI: 10.1073/PNAS.2215945120
Page generated: Fri Apr 7 09:25:01 2023

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