Atomistry » Magnesium » PDB 8e9b-8ek7 » 8ehi
Atomistry »
  Magnesium »
    PDB 8e9b-8ek7 »
      8ehi »

Magnesium in PDB 8ehi: Cryo-Em Structure of His-Elemental Paused Elongation Complex with An Unfolded Tl (2)

Enzymatic activity of Cryo-Em Structure of His-Elemental Paused Elongation Complex with An Unfolded Tl (2)

All present enzymatic activity of Cryo-Em Structure of His-Elemental Paused Elongation Complex with An Unfolded Tl (2):
2.7.7.6;

Other elements in 8ehi:

The structure of Cryo-Em Structure of His-Elemental Paused Elongation Complex with An Unfolded Tl (2) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of His-Elemental Paused Elongation Complex with An Unfolded Tl (2) (pdb code 8ehi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of His-Elemental Paused Elongation Complex with An Unfolded Tl (2), PDB code: 8ehi:

Magnesium binding site 1 out of 1 in 8ehi

Go back to Magnesium Binding Sites List in 8ehi
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of His-Elemental Paused Elongation Complex with An Unfolded Tl (2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of His-Elemental Paused Elongation Complex with An Unfolded Tl (2) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1501

b:21.3
occ:1.00
OD1 J:ASP462 2.0 21.5 1.0
OD1 J:ASP460 2.0 20.1 1.0
CG J:ASP460 2.7 20.1 1.0
OD2 J:ASP460 2.8 20.1 1.0
CG J:ASP462 2.9 21.5 1.0
OD2 J:ASP462 3.1 21.5 1.0
OD2 J:ASP464 3.4 29.0 1.0
C5' R:U19 3.5 41.3 1.0
O3' R:U19 3.7 41.3 1.0
CG J:ASP464 3.9 29.0 1.0
O5' R:U19 3.9 41.3 1.0
C4' R:U19 4.1 41.3 1.0
CB J:ASP460 4.1 20.1 1.0
CB J:ASP464 4.2 29.0 1.0
CB J:ASP462 4.3 21.5 1.0
C3' R:U19 4.4 41.3 1.0
N J:ASP462 4.4 21.5 1.0
O J:ASP460 4.5 20.1 1.0
OD1 J:ASP464 4.6 29.0 1.0
N J:ASP460 4.6 20.1 1.0
C J:ASP460 4.6 20.1 1.0
C J:ASP462 4.7 21.5 1.0
CA J:ASP462 4.7 21.5 1.0
CA J:ASP460 4.7 20.1 1.0
N J:ASP464 4.7 29.0 1.0
N J:GLY463 4.9 23.1 1.0
O J:ASP462 5.0 21.5 1.0

Reference:

J.Y.Kang, T.V.Mishanina, Y.Bao, J.Chen, E.Llewellyn, J.Liu, S.A.Darst, R.Landick. An Ensemble of Interconverting Conformations of the Elemental Paused Transcription Complex Creates Regulatory Options. Proc.Natl.Acad.Sci.Usa V. 120 45120 2023.
ISSN: ESSN 1091-6490
PubMed: 36795753
DOI: 10.1073/PNAS.2215945120
Page generated: Fri Oct 4 01:14:42 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy