Magnesium in PDB 8eqm: Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light

The structure of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light also contains other interesting chemical elements:

Manganese	(Mn)	8 atoms
Calcium	(Ca)	2 atoms
Chlorine	(Cl)	4 atoms
Iron	(Fe)	6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70;

Binding sites:

The binding sites of Magnesium atom in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light (pdb code 8eqm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 70 binding sites of Magnesium where determined in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light, PDB code: 8eqm:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 70 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg404 b:33.4 occ:1.00 MG A:CLA404 0.0 33.4 1.0 ND A:CLA404 2.0 33.4 1.0 NB A:CLA404 2.1 33.4 1.0 NC A:CLA404 2.1 33.4 1.0 NA A:CLA404 2.2 33.4 1.0 NE2 A:HIS199 2.8 17.8 1.0 C4D A:CLA404 2.9 33.4 1.0 C4B A:CLA404 3.0 33.4 1.0 C1B A:CLA404 3.1 33.4 1.0 C1C A:CLA404 3.1 33.4 1.0 C1D A:CLA404 3.1 33.4 1.0 C4A A:CLA404 3.2 33.4 1.0 C1A A:CLA404 3.2 33.4 1.0 C4C A:CLA404 3.2 33.4 1.0 CHC A:CLA404 3.4 33.4 1.0 CHB A:CLA404 3.4 33.4 1.0 CHA A:CLA404 3.5 33.4 1.0 CHD A:CLA404 3.6 33.4 1.0 CD2 A:HIS199 3.7 17.8 1.0 CE A:MET184 3.7 21.8 1.0 CE1 A:HIS199 3.8 17.8 1.0 C3D A:CLA404 4.2 33.4 1.0 CAB D:CLA403 4.2 18.4 1.0 CBB D:CLA403 4.3 18.4 1.0 C3B A:CLA404 4.3 33.4 1.0 C2B A:CLA404 4.4 33.4 1.0 C2D A:CLA404 4.4 33.4 1.0 C2C A:CLA404 4.4 33.4 1.0 C3C A:CLA404 4.5 33.4 1.0 C3A A:CLA404 4.5 33.4 1.0 C2A A:CLA404 4.5 33.4 1.0 CG A:HIS199 4.9 17.8 1.0 ND1 A:HIS199 4.9 17.8 1.0 CBD A:CLA404 5.0 33.4 1.0 CHC D:CLA403 5.0 18.4 1.0

Magnesium binding site 2 out of 70 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg405 b:22.1 occ:1.00 MG A:CLA405 0.0 22.1 1.0 ND A:CLA405 2.0 22.1 1.0 NB A:CLA405 2.1 22.1 1.0 O A:HOH534 2.1 19.7 1.0 NC A:CLA405 2.1 22.1 1.0 NA A:CLA405 2.2 22.1 1.0 C4D A:CLA405 2.9 22.1 1.0 C4B A:CLA405 3.0 22.1 1.0 C1C A:CLA405 3.1 22.1 1.0 C1B A:CLA405 3.1 22.1 1.0 C1D A:CLA405 3.1 22.1 1.0 C4C A:CLA405 3.1 22.1 1.0 C1A A:CLA405 3.2 22.1 1.0 C4A A:CLA405 3.2 22.1 1.0 CHC A:CLA405 3.3 22.1 1.0 CHA A:CLA405 3.4 22.1 1.0 CHB A:CLA405 3.4 22.1 1.0 CHD A:CLA405 3.6 22.1 1.0 CBB D:PHO402 4.0 22.8 1.0 C3D A:CLA405 4.1 22.1 1.0 C3B A:CLA405 4.3 22.1 1.0 O A:HOH552 4.3 19.7 1.0 C2D A:CLA405 4.3 22.1 1.0 O1A A:CLA405 4.4 22.1 1.0 C2B A:CLA405 4.4 22.1 1.0 C2C A:CLA405 4.4 22.1 1.0 C3C A:CLA405 4.4 22.1 1.0 C2A A:CLA405 4.5 22.1 1.0 C3A A:CLA405 4.5 22.1 1.0 CG2 D:ILE178 4.7 17.9 1.0 CBD A:CLA405 4.9 22.1 1.0 CG1 D:ILE178 5.0 17.9 1.0

Magnesium binding site 3 out of 70 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg407 b:26.4 occ:1.00 MG A:CLA407 0.0 26.4 1.0 ND A:CLA407 2.0 26.4 1.0 NB A:CLA407 2.1 26.4 1.0 NC A:CLA407 2.1 26.4 1.0 NA A:CLA407 2.2 26.4 1.0 NE2 A:HIS119 2.9 19.8 1.0 C4D A:CLA407 2.9 26.4 1.0 C4B A:CLA407 3.0 26.4 1.0 C1B A:CLA407 3.1 26.4 1.0 C1C A:CLA407 3.1 26.4 1.0 C1D A:CLA407 3.1 26.4 1.0 C4A A:CLA407 3.2 26.4 1.0 C1A A:CLA407 3.2 26.4 1.0 C4C A:CLA407 3.2 26.4 1.0 CHC A:CLA407 3.4 26.4 1.0 CHB A:CLA407 3.4 26.4 1.0 CHA A:CLA407 3.5 26.4 1.0 CHD A:CLA407 3.6 26.4 1.0 CD2 A:HIS119 3.7 19.8 1.0 CE1 A:HIS119 3.9 19.8 1.0 CG1 I:VAL8 4.0 34.9 1.0 C3D A:CLA407 4.2 26.4 1.0 CG2 I:VAL12 4.2 33.0 1.0 C3B A:CLA407 4.3 26.4 1.0 C2B A:CLA407 4.4 26.4 1.0 C2D A:CLA407 4.4 26.4 1.0 C2C A:CLA407 4.4 26.4 1.0 C3C A:CLA407 4.5 26.4 1.0 C3A A:CLA407 4.5 26.4 1.0 C2A A:CLA407 4.5 26.4 1.0 CG2 A:VAL44 4.8 23.8 1.0 CG A:HIS119 4.9 19.8 1.0 CBA A:CLA407 4.9 26.4 1.0 ND1 A:HIS119 5.0 19.8 1.0 CBD A:CLA407 5.0 26.4 1.0

Magnesium binding site 4 out of 70 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:59.3 occ:1.00 MG B:CLA601 0.0 59.3 1.0 ND B:CLA601 2.0 59.3 1.0 NB B:CLA601 2.1 59.3 1.0 NC B:CLA601 2.1 59.3 1.0 NA B:CLA601 2.2 59.3 1.0 C4D B:CLA601 2.9 59.3 1.0 C4B B:CLA601 3.0 59.3 1.0 C1B B:CLA601 3.1 59.3 1.0 C1C B:CLA601 3.1 59.3 1.0 C1D B:CLA601 3.1 59.3 1.0 C4A B:CLA601 3.2 59.3 1.0 C4C B:CLA601 3.2 59.3 1.0 C1A B:CLA601 3.2 59.3 1.0 CHC B:CLA601 3.4 59.3 1.0 CHB B:CLA601 3.4 59.3 1.0 CHA B:CLA601 3.5 59.3 1.0 CHD B:CLA601 3.6 59.3 1.0 O B:TRP185 3.7 46.3 1.0 CBB B:CLA602 4.1 33.6 1.0 C3D B:CLA601 4.1 59.3 1.0 C3B B:CLA601 4.3 59.3 1.0 C2B B:CLA601 4.4 59.3 1.0 C2D B:CLA601 4.4 59.3 1.0 C2C B:CLA601 4.4 59.3 1.0 C3C B:CLA601 4.5 59.3 1.0 C3A B:CLA601 4.5 59.3 1.0 C2A B:CLA601 4.5 59.3 1.0 CE2 B:PHE190 4.8 43.2 1.0 O1A B:CLA601 4.9 59.3 1.0 CBD B:CLA601 5.0 59.3 1.0 C B:TRP185 5.0 46.3 1.0

Magnesium binding site 5 out of 70 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:33.6 occ:1.00 MG B:CLA602 0.0 33.6 1.0 ND B:CLA602 2.0 33.6 1.0 NB B:CLA602 2.1 33.6 1.0 NC B:CLA602 2.1 33.6 1.0 NA B:CLA602 2.2 33.6 1.0 C4D B:CLA602 2.9 33.6 1.0 C4B B:CLA602 3.0 33.6 1.0 C1B B:CLA602 3.1 33.6 1.0 C1C B:CLA602 3.1 33.6 1.0 C1D B:CLA602 3.1 33.6 1.0 C4A B:CLA602 3.2 33.6 1.0 ND1 B:HIS201 3.2 25.7 1.0 C1A B:CLA602 3.2 33.6 1.0 C4C B:CLA602 3.2 33.6 1.0 CHC B:CLA602 3.4 33.6 1.0 CZ H:PHE47 3.4 52.2 1.0 CHB B:CLA602 3.4 33.6 1.0 CHA B:CLA602 3.5 33.6 1.0 CHD B:CLA602 3.6 33.6 1.0 CG B:HIS201 4.0 25.7 1.0 CE1 B:HIS201 4.1 25.7 1.0 CB B:HIS201 4.1 25.7 1.0 CE2 H:PHE47 4.1 52.2 1.0 CE1 B:PHE190 4.1 43.2 1.0 C3D B:CLA602 4.2 33.6 1.0 C3B B:CLA602 4.3 33.6 1.0 C2B B:CLA602 4.4 33.6 1.0 CE1 H:PHE47 4.4 52.2 1.0 C2D B:CLA602 4.4 33.6 1.0 C2C B:CLA602 4.4 33.6 1.0 C3C B:CLA602 4.5 33.6 1.0 CD1 H:ILE51 4.5 44.7 1.0 C3A B:CLA602 4.5 33.6 1.0 C2A B:CLA602 4.5 33.6 1.0 CA B:HIS201 4.6 25.7 1.0 CZ B:PHE190 4.9 43.2 1.0 CD1 B:PHE190 4.9 43.2 1.0 CBD B:CLA602 5.0 33.6 1.0

Magnesium binding site 6 out of 70 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg603 b:25.4 occ:1.00 MG B:CLA603 0.0 25.4 1.0 ND B:CLA603 2.0 25.4 1.0 NB B:CLA603 2.1 25.4 1.0 NC B:CLA603 2.1 25.4 1.0 NA B:CLA603 2.2 25.4 1.0 C4D B:CLA603 2.9 25.4 1.0 C4B B:CLA603 3.0 25.4 1.0 C1B B:CLA603 3.1 25.4 1.0 C1C B:CLA603 3.1 25.4 1.0 NE2 B:HIS202 3.1 25.1 1.0 C1D B:CLA603 3.1 25.4 1.0 C4A B:CLA603 3.2 25.4 1.0 C1A B:CLA603 3.2 25.4 1.0 C4C B:CLA603 3.2 25.4 1.0 CHC B:CLA603 3.4 25.4 1.0 C5 B:F6C604 3.4 19.0 1.0 CHB B:CLA603 3.4 25.4 1.0 CHA B:CLA603 3.5 25.4 1.0 CHD B:CLA603 3.6 25.4 1.0 C3 B:F6C604 3.7 19.0 1.0 CD2 B:HIS202 3.8 25.1 1.0 C2 B:F6C604 3.8 19.0 1.0 C3D B:CLA603 4.2 25.4 1.0 CE1 B:HIS202 4.3 25.1 1.0 C3B B:CLA603 4.3 25.4 1.0 C2B B:CLA603 4.4 25.4 1.0 C2D B:CLA603 4.4 25.4 1.0 C2C B:CLA603 4.4 25.4 1.0 C3C B:CLA603 4.5 25.4 1.0 C3A B:CLA603 4.5 25.4 1.0 C2A B:CLA603 4.5 25.4 1.0 C6 B:F6C604 4.7 19.0 1.0 C4 B:F6C604 4.8 19.0 1.0 C1 B:F6C604 4.8 19.0 1.0 C7 B:F6C604 4.9 19.0 1.0 CBD B:CLA603 5.0 25.4 1.0 NE2 B:HIS201 5.0 25.7 1.0

Magnesium binding site 7 out of 70 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg604 b:19.0 occ:1.00 MG B:F6C604 0.0 19.0 1.0 NE2 B:HIS455 1.9 13.4 1.0 ND B:F6C604 2.0 19.0 1.0 NB B:F6C604 2.1 19.0 1.0 NC B:F6C604 2.1 19.0 1.0 NA B:F6C604 2.2 19.0 1.0 CE1 B:HIS455 2.8 13.4 1.0 C4D B:F6C604 2.9 19.0 1.0 CD2 B:HIS455 3.0 13.4 1.0 C4B B:F6C604 3.0 19.0 1.0 C1B B:F6C604 3.0 19.0 1.0 C1C B:F6C604 3.1 19.0 1.0 C1D B:F6C604 3.1 19.0 1.0 C4A B:F6C604 3.1 19.0 1.0 C4C B:F6C604 3.2 19.0 1.0 C1A B:F6C604 3.2 19.0 1.0 CHC B:F6C604 3.4 19.0 1.0 CHB B:F6C604 3.4 19.0 1.0 CHA B:F6C604 3.5 19.0 1.0 C16 B:CLA612 3.5 21.0 1.0 CHD B:F6C604 3.6 19.0 1.0 C17 B:CLA612 3.7 21.0 1.0 ND1 B:HIS455 4.0 13.4 1.0 CG B:HIS455 4.1 13.4 1.0 C3D B:F6C604 4.1 19.0 1.0 C2D B:F6C604 4.3 19.0 1.0 C3B B:F6C604 4.3 19.0 1.0 C2B B:F6C604 4.3 19.0 1.0 C2C B:F6C604 4.4 19.0 1.0 C3C B:F6C604 4.4 19.0 1.0 C3A B:F6C604 4.5 19.0 1.0 C2A B:F6C604 4.5 19.0 1.0 C14 B:CLA612 4.6 21.0 1.0 CZ B:PHE451 4.7 14.7 1.0 CBB B:F6C613 4.8 22.1 1.0 CE1 B:PHE451 4.8 14.7 1.0 C15 B:CLA612 4.9 21.0 1.0 CBD B:F6C604 4.9 19.0 1.0 C18 B:CLA612 4.9 21.0 1.0 C13 B:CLA612 5.0 21.0 1.0

Magnesium binding site 8 out of 70 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg605 b:23.9 occ:1.00 MG B:CLA605 0.0 23.9 1.0 ND B:CLA605 2.0 23.9 1.0 NB B:CLA605 2.1 23.9 1.0 NC B:CLA605 2.1 23.9 1.0 NA B:CLA605 2.2 23.9 1.0 C4D B:CLA605 2.9 23.9 1.0 NE2 B:HIS100 2.9 21.4 1.0 C4B B:CLA605 3.0 23.9 1.0 C1C B:CLA605 3.0 23.9 1.0 C1B B:CLA605 3.1 23.9 1.0 C1D B:CLA605 3.1 23.9 1.0 C4A B:CLA605 3.1 23.9 1.0 C1A B:CLA605 3.2 23.9 1.0 C4C B:CLA605 3.2 23.9 1.0 CHC B:CLA605 3.3 23.9 1.0 CHB B:CLA605 3.4 23.9 1.0 CHA B:CLA605 3.5 23.9 1.0 CD2 B:HIS100 3.5 21.4 1.0 CHD B:CLA605 3.6 23.9 1.0 C1 B:CLA605 3.6 23.9 1.0 C2 B:CLA605 3.7 23.9 1.0 CE1 B:HIS100 4.1 21.4 1.0 C3D B:CLA605 4.1 23.9 1.0 C3B B:CLA605 4.3 23.9 1.0 C3 B:CLA605 4.3 23.9 1.0 C2D B:CLA605 4.4 23.9 1.0 C2C B:CLA605 4.4 23.9 1.0 C2B B:CLA605 4.4 23.9 1.0 C3C B:CLA605 4.4 23.9 1.0 C3A B:CLA605 4.5 23.9 1.0 C2A B:CLA605 4.5 23.9 1.0 C6 B:CLA605 4.8 23.9 1.0 CG B:HIS100 4.8 21.4 1.0 C4 B:CLA606 4.8 27.1 1.0 O2A B:CLA605 4.8 23.9 1.0 C5 B:CLA605 4.8 23.9 1.0 CBD B:CLA605 4.9 23.9 1.0 C7 B:CLA605 5.0 23.9 1.0

Magnesium binding site 9 out of 70 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg606 b:27.1 occ:1.00 MG B:CLA606 0.0 27.1 1.0 ND B:CLA606 2.0 27.1 1.0 NB B:CLA606 2.1 27.1 1.0 NC B:CLA606 2.1 27.1 1.0 NA B:CLA606 2.2 27.1 1.0 C4D B:CLA606 2.9 27.1 1.0 C4B B:CLA606 3.0 27.1 1.0 C1B B:CLA606 3.1 27.1 1.0 ND1 B:HIS157 3.1 26.9 1.0 C1C B:CLA606 3.1 27.1 1.0 C1D B:CLA606 3.1 27.1 1.0 C4A B:CLA606 3.2 27.1 1.0 C1A B:CLA606 3.2 27.1 1.0 C4C B:CLA606 3.2 27.1 1.0 CHC B:CLA606 3.4 27.1 1.0 CHB B:CLA606 3.4 27.1 1.0 CHA B:CLA606 3.5 27.1 1.0 CHD B:CLA606 3.6 27.1 1.0 CE1 B:HIS157 3.8 26.9 1.0 CG B:HIS157 3.8 26.9 1.0 CB B:HIS157 4.1 26.9 1.0 C3D B:CLA606 4.2 27.1 1.0 C3B B:CLA606 4.3 27.1 1.0 C2B B:CLA606 4.4 27.1 1.0 C2D B:CLA606 4.4 27.1 1.0 C2C B:CLA606 4.4 27.1 1.0 C3C B:CLA606 4.5 27.1 1.0 C3A B:CLA606 4.5 27.1 1.0 C2A B:CLA606 4.5 27.1 1.0 NE2 B:HIS157 4.7 26.9 1.0 CD2 B:HIS157 4.8 26.9 1.0 CBD B:CLA606 5.0 27.1 1.0

Magnesium binding site 10 out of 70 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg607 b:25.6 occ:1.00 MG B:F6C607 0.0 25.6 1.0 ND B:F6C607 2.0 25.6 1.0 NB B:F6C607 2.1 25.6 1.0 NC B:F6C607 2.1 25.6 1.0 NA B:F6C607 2.2 25.6 1.0 O B:HOH759 2.4 22.0 1.0 C4D B:F6C607 2.9 25.6 1.0 C4B B:F6C607 3.0 25.6 1.0 C1B B:F6C607 3.1 25.6 1.0 C1C B:F6C607 3.1 25.6 1.0 C1D B:F6C607 3.1 25.6 1.0 C4A B:F6C607 3.2 25.6 1.0 C1A B:F6C607 3.2 25.6 1.0 C4C B:F6C607 3.2 25.6 1.0 CHC B:F6C607 3.4 25.6 1.0 CHB B:F6C607 3.4 25.6 1.0 CHA B:F6C607 3.5 25.6 1.0 C14 M:LMG101 3.5 32.5 1.0 CHD B:F6C607 3.6 25.6 1.0 C16 M:LMG101 3.8 32.5 1.0 CE B:MET37 4.1 26.7 1.0 C3D B:F6C607 4.2 25.6 1.0 C15 M:LMG101 4.2 32.5 1.0 C3B B:F6C607 4.3 25.6 1.0 C2B B:F6C607 4.4 25.6 1.0 C2D B:F6C607 4.4 25.6 1.0 C2C B:F6C607 4.4 25.6 1.0 C3C B:F6C607 4.5 25.6 1.0 C3A B:F6C607 4.5 25.6 1.0 C2A B:F6C607 4.5 25.6 1.0 CD2 B:PHE61 4.7 19.5 1.0 C13 M:LMG101 4.7 32.5 1.0 CBD B:F6C607 5.0 25.6 1.0

C.J.Gisriel, G.Shen, D.A.Flesher, V.Kurashov, J.H.Golbeck, G.W.Brudvig, M.Amin, D.A.Bryant. Structure of A Dimeric Photosystem II Complex From A Cyanobacterium Acclimated to Far-Red Light. J.Biol.Chem. 02815 2022.
ISSN: ESSN 1083-351X
PubMed: 36549647
DOI: 10.1016/J.JBC.2022.102815