Magnesium in PDB 8erp: Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline

All present enzymatic activity of Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline:
2.7.8.2;

The binding sites of Magnesium atom in the Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline (pdb code 8erp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline, PDB code: 8erp:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:31.5 occ:1.00 OD1 B:ASP136 2.0 23.4 1.0 OD1 B:ASP111 2.1 36.8 1.0 OD1 B:ASP132 2.1 34.3 1.0 CG B:ASP136 2.7 23.4 1.0 OD2 B:ASP136 2.8 23.4 1.0 CG B:ASP111 3.0 36.8 1.0 CG B:ASP132 3.2 34.3 1.0 OD2 B:ASP111 3.5 36.8 1.0 O B:ASP132 3.7 34.3 1.0 MG B:MG502 3.8 34.9 1.0 OD2 B:ASP132 3.9 34.3 1.0 OH B:TYR107 3.9 27.0 1.0 CB B:ASP111 4.1 36.8 1.0 CB B:ASP136 4.2 23.4 1.0 O3B B:CDC505 4.3 50.0 1.0 CB B:ASP132 4.4 34.3 1.0 C B:ASP132 4.4 34.3 1.0 CA B:ASP132 4.4 34.3 1.0 N B:ASP136 4.7 23.4 1.0 CA B:ASP136 4.7 23.4 1.0 CZ B:TYR107 4.7 27.0 1.0

Magnesium binding site 2 out of 4 in the Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:34.9 occ:1.00 O2A B:CDC505 2.1 50.0 1.0 O3B B:CDC505 2.2 50.0 1.0 OD2 B:ASP132 2.3 34.3 1.0 OD1 B:ASP111 2.7 36.8 1.0 CG B:ASP132 3.1 34.3 1.0 CG B:ASP111 3.2 36.8 1.0 OD2 B:ASP111 3.2 36.8 1.0 OD1 B:ASP132 3.3 34.3 1.0 O B:ASP111 3.4 36.8 1.0 PA B:CDC505 3.5 50.0 1.0 PB B:CDC505 3.5 50.0 1.0 MG B:MG501 3.8 31.5 1.0 O3A B:CDC505 3.8 50.0 1.0 OD1 B:ASP114 3.9 41.3 1.0 C B:ASP111 4.1 36.8 1.0 CB B:ASP111 4.3 36.8 1.0 CA B:ASP111 4.3 36.8 1.0 CA B:GLY115 4.4 48.7 1.0 O1A B:CDC505 4.4 50.0 1.0 O1B B:CDC505 4.5 50.0 1.0 O5' B:CDC505 4.5 50.0 1.0 N B:GLY115 4.5 48.7 1.0 O2B B:CDC505 4.6 50.0 1.0 CB B:ASP132 4.6 34.3 1.0 CG B:ASP114 4.9 41.3 1.0 C14 B:CDC505 5.0 50.0 1.0 C6 B:CDC505 5.0 50.0 1.0

Magnesium binding site 3 out of 4 in the Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:31.5 occ:1.00 OD1 A:ASP136 2.0 23.4 1.0 OD1 A:ASP111 2.1 36.8 1.0 OD1 A:ASP132 2.1 34.3 1.0 CG A:ASP136 2.7 23.4 1.0 OD2 A:ASP136 2.8 23.4 1.0 CG A:ASP111 3.0 36.8 1.0 CG A:ASP132 3.2 34.3 1.0 OD2 A:ASP111 3.5 36.8 1.0 O A:ASP132 3.7 34.3 1.0 MG A:MG504 3.8 34.9 1.0 OD2 A:ASP132 3.9 34.3 1.0 OH A:TYR107 3.9 27.0 1.0 CB A:ASP111 4.1 36.8 1.0 CB A:ASP136 4.2 23.4 1.0 O3B A:CDC507 4.3 50.0 1.0 CB A:ASP132 4.4 34.3 1.0 C A:ASP132 4.4 34.3 1.0 CA A:ASP132 4.4 34.3 1.0 N A:ASP136 4.7 23.4 1.0 CA A:ASP136 4.7 23.4 1.0 CZ A:TYR107 4.7 27.0 1.0

Magnesium binding site 4 out of 4 in the Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Xenopus CHOLINEPHOSPHOTRANSFERASE1 in Complex with Cdp- Choline within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg504 b:34.9 occ:1.00 O2A A:CDC507 2.1 50.0 1.0 O3B A:CDC507 2.2 50.0 1.0 OD2 A:ASP132 2.3 34.3 1.0 OD1 A:ASP111 2.7 36.8 1.0 CG A:ASP132 3.1 34.3 1.0 CG A:ASP111 3.2 36.8 1.0 OD2 A:ASP111 3.2 36.8 1.0 OD1 A:ASP132 3.3 34.3 1.0 O A:ASP111 3.4 36.8 1.0 PA A:CDC507 3.5 50.0 1.0 PB A:CDC507 3.5 50.0 1.0 MG A:MG503 3.8 31.5 1.0 O3A A:CDC507 3.8 50.0 1.0 OD1 A:ASP114 3.9 41.3 1.0 C A:ASP111 4.1 36.8 1.0 CB A:ASP111 4.3 36.8 1.0 CA A:ASP111 4.3 36.8 1.0 CA A:GLY115 4.4 48.7 1.0 O1A A:CDC507 4.4 50.0 1.0 O1B A:CDC507 4.5 50.0 1.0 O5' A:CDC507 4.5 50.0 1.0 N A:GLY115 4.5 48.7 1.0 O2B A:CDC507 4.6 50.0 1.0 CB A:ASP132 4.6 34.3 1.0 CG A:ASP114 4.9 41.3 1.0 C14 A:CDC507 5.0 50.0 1.0 C6 A:CDC507 5.0 50.0 1.0

W.Lie, Z.Ming. Substrate Recognition and Catalysis in Eukaryotic Cholinephosphotransferase-1 To Be Published.