Magnesium in PDB 8f5m: Crystal Structure of P74 GP62

The structure of Crystal Structure of P74 GP62, PDB code: 8f5m was solved by B.Bae, S.K.Nair, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.40
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	110.937, 210.102, 181.089, 90, 90, 90
R / Rfree (%)	18.6 / 23.1

The binding sites of Magnesium atom in the Crystal Structure of P74 GP62 (pdb code 8f5m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of P74 GP62, PDB code: 8f5m:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of P74 GP62


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of P74 GP62 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg700 b:49.2 occ:1.00 OD1 A:ASP329 2.9 29.2 1.0 OD1 A:ASP331 3.0 28.4 1.0 OD1 A:ASP327 3.0 34.6 1.0 O A:HOH876 3.0 45.6 1.0 O A:HOH1012 3.4 41.0 1.0 NH2 A:ARG289 3.5 24.7 1.0 OD2 A:ASP327 3.5 35.5 1.0 CG A:ASP327 3.6 29.9 1.0 CG A:ASP329 3.7 29.7 1.0 OD2 A:ASP329 3.7 29.6 1.0 CG A:ASP331 3.9 28.5 1.0 OD2 A:ASP331 4.0 29.9 1.0 CZ A:ARG289 4.8 25.3 1.0 CB A:ASP327 4.9 29.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of P74 GP62


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of P74 GP62 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg700 b:48.0 occ:1.00 OD1 B:ASP327 2.8 42.9 1.0 OD1 B:ASP329 2.9 41.7 1.0 OD1 B:ASP331 2.9 30.3 1.0 CG B:ASP327 3.4 43.3 1.0 OD2 B:ASP329 3.4 39.9 1.0 OD2 B:ASP327 3.5 47.2 1.0 CG B:ASP329 3.5 41.9 1.0 CG B:ASP331 3.7 26.8 1.0 OD2 B:ASP331 3.7 27.9 1.0 NH2 B:ARG289 3.9 22.3 1.0 O B:HOH1055 4.3 45.3 1.0 CB B:ASP327 4.8 42.2 1.0 CB B:ASP329 4.9 40.9 1.0

A.Chaban, L.Minakhin, E.Goldobina, B.Bae, Y.Hao, S.Borukhov, L.Putzeys, M.Boon, F.Kabinger, R.Lavigne, K.S.Makarova, E.V.Koonin, S.K.Nair, S.Tagami, K.Severinov, M.L.Sokolova. Tail-Tape-Fused Virion and Non-Virion Rna Polymerases of A Thermophilic Virus with An Extremely Long Tail. Nat Commun V. 15 317 2024.
ISSN: ESSN 2041-1723
PubMed: 38182597
DOI: 10.1038/S41467-023-44630-Z