Magnesium in PDB 8f73: Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
Enzymatic activity of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
All present enzymatic activity of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose:
2.7.7.9;
Protein crystallography data
The structure of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose, PDB code: 8f73
was solved by
L.Dirr,
J.Fuehring,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
46.98 /
2.90
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
84.715,
114.847,
155.761,
90,
97.39,
90
|
|
R / Rfree (%)
|
19.5 /
23.6
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
(pdb code 8f73). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose, PDB code: 8f73:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 8f73
Go back to
Magnesium Binding Sites List in 8f73
Magnesium binding site 1 out
of 8 in the Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg303
b:52.2
occ:1.00
|
OD2
|
A:ASP130
|
1.9
|
53.1
|
1.0
|
|
O1B
|
A:UPG301
|
2.0
|
49.7
|
1.0
|
|
O
|
A:HOH406
|
2.0
|
48.5
|
1.0
|
|
O
|
A:HOH403
|
2.3
|
42.0
|
1.0
|
|
O
|
A:HOH401
|
2.4
|
75.8
|
1.0
|
|
O2A
|
A:UPG301
|
2.4
|
46.5
|
1.0
|
|
CG
|
A:ASP130
|
3.0
|
53.1
|
1.0
|
|
H5C1
|
A:UPG301
|
3.2
|
54.8
|
1.0
|
|
PB
|
A:UPG301
|
3.2
|
49.4
|
1.0
|
|
OD1
|
A:ASP130
|
3.5
|
55.4
|
1.0
|
|
O3A
|
A:UPG301
|
3.5
|
44.7
|
1.0
|
|
O6'
|
A:UPG301
|
3.5
|
54.4
|
1.0
|
|
PA
|
A:UPG301
|
3.5
|
44.7
|
1.0
|
|
HA3
|
A:GLY256
|
3.8
|
63.9
|
1.0
|
|
HZ2
|
A:LYS25
|
3.8
|
77.8
|
1.0
|
|
HO6'
|
A:UPG301
|
3.9
|
65.2
|
1.0
|
|
O5'
|
A:UPG301
|
3.9
|
46.9
|
1.0
|
|
C5C
|
A:UPG301
|
4.1
|
45.6
|
1.0
|
|
O2B
|
A:UPG301
|
4.3
|
54.7
|
1.0
|
|
H1'
|
A:UPG301
|
4.3
|
61.4
|
1.0
|
|
O3B
|
A:UPG301
|
4.3
|
43.8
|
1.0
|
|
CB
|
A:ASP130
|
4.3
|
39.8
|
1.0
|
|
HB2
|
A:ASP130
|
4.3
|
47.8
|
1.0
|
|
O5C
|
A:UPG301
|
4.4
|
35.7
|
1.0
|
|
HZ1
|
A:LYS25
|
4.4
|
77.8
|
1.0
|
|
C1'
|
A:UPG301
|
4.4
|
51.2
|
1.0
|
|
H5C2
|
A:UPG301
|
4.5
|
54.8
|
1.0
|
|
H5'
|
A:UPG301
|
4.5
|
58.1
|
1.0
|
|
NZ
|
A:LYS25
|
4.5
|
64.8
|
1.0
|
|
C5'
|
A:UPG301
|
4.6
|
48.4
|
1.0
|
|
C6'
|
A:UPG301
|
4.6
|
50.6
|
1.0
|
|
H3C
|
A:UPG301
|
4.7
|
58.9
|
1.0
|
|
HB3
|
A:ASP130
|
4.7
|
47.8
|
1.0
|
|
CA
|
A:GLY256
|
4.7
|
53.2
|
1.0
|
|
O1A
|
A:UPG301
|
4.8
|
49.4
|
1.0
|
|
HD13
|
A:LEU128
|
4.8
|
43.5
|
1.0
|
|
H
|
A:GLY256
|
4.8
|
70.2
|
1.0
|
|
OD1
|
A:ASP254
|
4.8
|
53.4
|
1.0
|
|
OD1
|
A:ASP131
|
4.9
|
55.0
|
1.0
|
|
HB3
|
A:LEU128
|
4.9
|
45.5
|
1.0
|
|
HZ3
|
A:LYS25
|
5.0
|
77.8
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 8f73
Go back to
Magnesium Binding Sites List in 8f73
Magnesium binding site 2 out
of 8 in the Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg302
b:51.6
occ:1.00
|
O
|
B:HOH401
|
2.0
|
70.9
|
1.0
|
|
O
|
B:HOH404
|
2.1
|
71.4
|
1.0
|
|
OD2
|
B:ASP130
|
2.1
|
56.5
|
1.0
|
|
O
|
B:HOH402
|
2.1
|
60.5
|
1.0
|
|
O1B
|
B:UPG301
|
2.2
|
36.3
|
1.0
|
|
O2A
|
B:UPG301
|
2.2
|
68.5
|
1.0
|
|
CG
|
B:ASP130
|
3.1
|
58.9
|
1.0
|
|
HO6'
|
B:UPG301
|
3.1
|
50.7
|
1.0
|
|
PA
|
B:UPG301
|
3.4
|
51.5
|
1.0
|
|
PB
|
B:UPG301
|
3.4
|
130.1
|
1.0
|
|
O6'
|
B:UPG301
|
3.5
|
42.2
|
1.0
|
|
OD1
|
B:ASP130
|
3.5
|
67.8
|
1.0
|
|
O5C
|
B:UPG301
|
3.6
|
64.3
|
1.0
|
|
O3A
|
B:UPG301
|
3.8
|
51.3
|
1.0
|
|
O5'
|
B:UPG301
|
3.8
|
56.0
|
1.0
|
|
HA3
|
B:GLY256
|
3.9
|
63.2
|
1.0
|
|
HZ2
|
B:LYS25
|
3.9
|
78.8
|
1.0
|
|
HB2
|
B:ASP130
|
4.1
|
48.5
|
1.0
|
|
CB
|
B:ASP130
|
4.2
|
40.4
|
1.0
|
|
H5'
|
B:UPG301
|
4.3
|
63.2
|
1.0
|
|
O
|
B:HOH407
|
4.3
|
58.9
|
1.0
|
|
O3B
|
B:UPG301
|
4.4
|
69.8
|
1.0
|
|
O2B
|
B:UPG301
|
4.4
|
43.5
|
1.0
|
|
HZ1
|
B:LYS25
|
4.5
|
78.8
|
1.0
|
|
H1'
|
B:UPG301
|
4.5
|
82.4
|
1.0
|
|
C5'
|
B:UPG301
|
4.5
|
52.7
|
1.0
|
|
C1'
|
B:UPG301
|
4.5
|
68.7
|
1.0
|
|
C6'
|
B:UPG301
|
4.6
|
54.6
|
1.0
|
|
OD1
|
B:ASP131
|
4.6
|
53.9
|
1.0
|
|
H3C
|
B:UPG301
|
4.6
|
73.5
|
1.0
|
|
NZ
|
B:LYS25
|
4.6
|
65.7
|
1.0
|
|
HB3
|
B:ASP130
|
4.7
|
48.5
|
1.0
|
|
O1A
|
B:UPG301
|
4.7
|
58.5
|
1.0
|
|
CA
|
B:GLY256
|
4.8
|
52.7
|
1.0
|
|
OD1
|
B:ASP254
|
4.8
|
54.5
|
1.0
|
|
H
|
B:GLY256
|
4.8
|
70.2
|
1.0
|
|
HD13
|
B:LEU128
|
4.8
|
56.6
|
1.0
|
|
C5C
|
B:UPG301
|
5.0
|
56.2
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 8f73
Go back to
Magnesium Binding Sites List in 8f73
Magnesium binding site 3 out
of 8 in the Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg303
b:45.9
occ:1.00
|
OD2
|
C:ASP130
|
2.1
|
59.2
|
1.0
|
|
O
|
C:HOH403
|
2.1
|
58.2
|
1.0
|
|
O
|
C:HOH406
|
2.1
|
64.9
|
1.0
|
|
O1B
|
C:UPG301
|
2.2
|
51.7
|
1.0
|
|
O
|
C:HOH409
|
2.2
|
68.1
|
1.0
|
|
O1A
|
C:UPG301
|
2.3
|
52.1
|
1.0
|
|
CG
|
C:ASP130
|
3.1
|
54.0
|
1.0
|
|
HO6'
|
C:UPG301
|
3.2
|
69.2
|
1.0
|
|
PB
|
C:UPG301
|
3.4
|
49.9
|
1.0
|
|
PA
|
C:UPG301
|
3.5
|
53.7
|
1.0
|
|
OD1
|
C:ASP130
|
3.5
|
56.9
|
1.0
|
|
O5C
|
C:UPG301
|
3.7
|
58.6
|
1.0
|
|
O6'
|
C:UPG301
|
3.7
|
57.7
|
1.0
|
|
O3A
|
C:UPG301
|
3.8
|
50.2
|
1.0
|
|
HA3
|
C:GLY256
|
3.8
|
75.6
|
1.0
|
|
O5'
|
C:UPG301
|
4.1
|
46.9
|
1.0
|
|
O2B
|
C:UPG301
|
4.2
|
63.3
|
1.0
|
|
HZ2
|
C:LYS25
|
4.3
|
85.4
|
1.0
|
|
O
|
C:HOH411
|
4.3
|
53.1
|
1.0
|
|
H3C
|
C:UPG301
|
4.4
|
76.0
|
1.0
|
|
CB
|
C:ASP130
|
4.4
|
52.6
|
1.0
|
|
HE3
|
C:LYS25
|
4.4
|
71.4
|
1.0
|
|
HB2
|
C:ASP130
|
4.4
|
63.1
|
1.0
|
|
O3B
|
C:UPG301
|
4.5
|
65.1
|
1.0
|
|
HZ1
|
C:LYS25
|
4.5
|
85.4
|
1.0
|
|
H5'
|
C:UPG301
|
4.6
|
64.1
|
1.0
|
|
C1'
|
C:UPG301
|
4.7
|
54.6
|
1.0
|
|
OD1
|
C:ASP131
|
4.7
|
67.9
|
1.0
|
|
H1'
|
C:UPG301
|
4.7
|
65.5
|
1.0
|
|
OD1
|
C:ASP254
|
4.7
|
62.5
|
1.0
|
|
C5'
|
C:UPG301
|
4.8
|
53.4
|
1.0
|
|
HD13
|
C:LEU128
|
4.8
|
50.1
|
1.0
|
|
NZ
|
C:LYS25
|
4.8
|
71.2
|
1.0
|
|
CA
|
C:GLY256
|
4.8
|
63.0
|
1.0
|
|
C6'
|
C:UPG301
|
4.8
|
60.6
|
1.0
|
|
H
|
C:GLY256
|
4.8
|
68.2
|
1.0
|
|
O2A
|
C:UPG301
|
4.8
|
52.2
|
1.0
|
|
HB3
|
C:ASP130
|
4.9
|
63.1
|
1.0
|
|
HB3
|
C:LEU128
|
4.9
|
61.9
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 8f73
Go back to
Magnesium Binding Sites List in 8f73
Magnesium binding site 4 out
of 8 in the Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg303
b:68.3
occ:1.00
|
O
|
D:HOH402
|
2.0
|
80.0
|
1.0
|
|
O1B
|
D:UPG301
|
2.0
|
58.3
|
1.0
|
|
OD2
|
D:ASP130
|
2.2
|
71.1
|
1.0
|
|
O2A
|
D:UPG301
|
2.4
|
49.1
|
1.0
|
|
O
|
D:HOH403
|
2.4
|
66.6
|
1.0
|
|
O
|
D:HOH401
|
2.7
|
66.7
|
1.0
|
|
PB
|
D:UPG301
|
2.9
|
54.9
|
1.0
|
|
O2B
|
D:UPG301
|
3.1
|
46.2
|
1.0
|
|
CG
|
D:ASP130
|
3.5
|
63.6
|
1.0
|
|
PA
|
D:UPG301
|
3.5
|
52.1
|
1.0
|
|
O3A
|
D:UPG301
|
3.5
|
71.1
|
1.0
|
|
HA3
|
D:GLY256
|
3.7
|
72.1
|
1.0
|
|
O
|
D:HOH406
|
3.8
|
61.8
|
1.0
|
|
HZ2
|
D:LYS25
|
3.9
|
75.1
|
1.0
|
|
HZ1
|
D:LYS25
|
4.1
|
75.1
|
1.0
|
|
OD1
|
D:ASP130
|
4.1
|
76.1
|
1.0
|
|
H5C1
|
D:UPG301
|
4.1
|
58.1
|
1.0
|
|
O6'
|
D:UPG301
|
4.3
|
48.8
|
1.0
|
|
O3B
|
D:UPG301
|
4.3
|
62.1
|
1.0
|
|
O1A
|
D:UPG301
|
4.3
|
73.1
|
1.0
|
|
HB2
|
D:ASP130
|
4.3
|
53.8
|
1.0
|
|
H5'
|
D:UPG301
|
4.4
|
69.1
|
1.0
|
|
NZ
|
D:LYS25
|
4.4
|
62.6
|
1.0
|
|
O5'
|
D:UPG301
|
4.5
|
65.3
|
1.0
|
|
HO6'
|
D:UPG301
|
4.5
|
58.6
|
1.0
|
|
CB
|
D:ASP130
|
4.6
|
44.8
|
1.0
|
|
OD1
|
D:ASP254
|
4.6
|
66.1
|
1.0
|
|
CA
|
D:GLY256
|
4.6
|
60.1
|
1.0
|
|
O5C
|
D:UPG301
|
4.7
|
37.1
|
1.0
|
|
HE3
|
D:LYS25
|
4.8
|
75.1
|
1.0
|
|
C5'
|
D:UPG301
|
4.9
|
57.6
|
1.0
|
|
C1'
|
D:UPG301
|
4.9
|
55.9
|
1.0
|
|
C5C
|
D:UPG301
|
4.9
|
48.4
|
1.0
|
|
HB3
|
D:ASP130
|
5.0
|
53.8
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 8f73
Go back to
Magnesium Binding Sites List in 8f73
Magnesium binding site 5 out
of 8 in the Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg302
b:52.2
occ:1.00
|
O
|
E:HOH408
|
2.1
|
83.0
|
1.0
|
|
OD2
|
E:ASP130
|
2.2
|
67.1
|
1.0
|
|
O1B
|
E:UPG301
|
2.5
|
55.2
|
1.0
|
|
O
|
E:HOH402
|
2.5
|
72.1
|
1.0
|
|
O
|
E:HOH401
|
2.5
|
87.3
|
1.0
|
|
O2A
|
E:UPG301
|
2.5
|
81.3
|
1.0
|
|
O3A
|
E:UPG301
|
2.9
|
54.8
|
1.0
|
|
PB
|
E:UPG301
|
3.2
|
60.7
|
1.0
|
|
CG
|
E:ASP130
|
3.3
|
61.1
|
1.0
|
|
PA
|
E:UPG301
|
3.3
|
57.5
|
1.0
|
|
O6'
|
E:UPG301
|
3.5
|
67.8
|
1.0
|
|
HA3
|
E:GLY256
|
3.6
|
76.9
|
1.0
|
|
OD1
|
E:ASP130
|
3.8
|
77.7
|
1.0
|
|
H5C1
|
E:UPG301
|
3.8
|
73.8
|
1.0
|
|
HO6'
|
E:UPG301
|
3.9
|
81.3
|
1.0
|
|
O5'
|
E:UPG301
|
4.2
|
53.1
|
1.0
|
|
O2B
|
E:UPG301
|
4.2
|
67.0
|
1.0
|
|
HB2
|
E:ASP130
|
4.3
|
69.0
|
1.0
|
|
H3C
|
E:UPG301
|
4.3
|
85.7
|
1.0
|
|
O1A
|
E:UPG301
|
4.4
|
75.7
|
1.0
|
|
CB
|
E:ASP130
|
4.4
|
57.5
|
1.0
|
|
O5C
|
E:UPG301
|
4.4
|
52.3
|
1.0
|
|
O3B
|
E:UPG301
|
4.4
|
74.0
|
1.0
|
|
H5'
|
E:UPG301
|
4.5
|
58.7
|
1.0
|
|
C5C
|
E:UPG301
|
4.5
|
61.5
|
1.0
|
|
CA
|
E:GLY256
|
4.6
|
64.1
|
1.0
|
|
O
|
E:HOH412
|
4.6
|
56.9
|
1.0
|
|
H1'
|
E:UPG301
|
4.6
|
71.6
|
1.0
|
|
OD1
|
E:ASP131
|
4.6
|
79.2
|
1.0
|
|
C1'
|
E:UPG301
|
4.7
|
59.6
|
1.0
|
|
C6'
|
E:UPG301
|
4.7
|
52.6
|
1.0
|
|
OD1
|
E:ASP254
|
4.7
|
69.8
|
1.0
|
|
C5'
|
E:UPG301
|
4.7
|
48.9
|
1.0
|
|
HB3
|
E:ASP130
|
4.8
|
69.0
|
1.0
|
|
HZ2
|
E:LYS25
|
4.8
|
77.4
|
1.0
|
|
H
|
E:GLY256
|
4.8
|
73.9
|
1.0
|
|
HA2
|
E:GLY256
|
4.8
|
76.9
|
1.0
|
|
HD2
|
E:LYS25
|
5.0
|
64.6
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 8f73
Go back to
Magnesium Binding Sites List in 8f73
Magnesium binding site 6 out
of 8 in the Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg302
b:61.8
occ:1.00
|
O
|
F:HOH401
|
2.0
|
65.4
|
1.0
|
|
O2B
|
F:UPG301
|
2.2
|
68.3
|
1.0
|
|
OD2
|
F:ASP130
|
2.2
|
60.6
|
1.0
|
|
O
|
F:HOH405
|
2.2
|
53.6
|
1.0
|
|
O1A
|
F:UPG301
|
2.2
|
58.5
|
1.0
|
|
O
|
F:HOH402
|
2.2
|
52.5
|
1.0
|
|
HO6'
|
F:UPG301
|
2.8
|
60.1
|
1.0
|
|
CG
|
F:ASP130
|
3.3
|
62.4
|
1.0
|
|
PB
|
F:UPG301
|
3.3
|
62.1
|
1.0
|
|
PA
|
F:UPG301
|
3.4
|
61.2
|
1.0
|
|
O6'
|
F:UPG301
|
3.5
|
50.0
|
1.0
|
|
O1B
|
F:UPG301
|
3.7
|
59.1
|
1.0
|
|
O5C
|
F:UPG301
|
3.7
|
56.0
|
1.0
|
|
OD1
|
F:ASP130
|
3.7
|
61.6
|
1.0
|
|
HA3
|
F:GLY256
|
3.8
|
72.0
|
1.0
|
|
O3A
|
F:UPG301
|
3.8
|
68.9
|
1.0
|
|
HZ1
|
F:LYS25
|
3.9
|
86.5
|
1.0
|
|
O
|
F:HOH407
|
4.1
|
46.4
|
1.0
|
|
H5'
|
F:UPG301
|
4.2
|
75.5
|
1.0
|
|
O5'
|
F:UPG301
|
4.3
|
53.1
|
1.0
|
|
HZ2
|
F:LYS25
|
4.4
|
86.5
|
1.0
|
|
HB2
|
F:ASP130
|
4.4
|
56.0
|
1.0
|
|
CB
|
F:ASP130
|
4.5
|
46.7
|
1.0
|
|
O3B
|
F:UPG301
|
4.5
|
68.7
|
1.0
|
|
C6'
|
F:UPG301
|
4.6
|
56.1
|
1.0
|
|
C5'
|
F:UPG301
|
4.6
|
63.0
|
1.0
|
|
NZ
|
F:LYS25
|
4.6
|
72.1
|
1.0
|
|
H3C
|
F:UPG301
|
4.7
|
84.7
|
1.0
|
|
O2A
|
F:UPG301
|
4.7
|
60.8
|
1.0
|
|
OD1
|
F:ASP254
|
4.8
|
70.7
|
1.0
|
|
CA
|
F:GLY256
|
4.8
|
60.0
|
1.0
|
|
OD1
|
F:ASP131
|
4.8
|
65.1
|
1.0
|
|
C1'
|
F:UPG301
|
4.9
|
59.2
|
1.0
|
|
H6'2
|
F:UPG301
|
4.9
|
67.3
|
1.0
|
|
HB3
|
F:ASP130
|
4.9
|
56.0
|
1.0
|
|
H
|
F:GLY256
|
4.9
|
81.1
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 8f73
Go back to
Magnesium Binding Sites List in 8f73
Magnesium binding site 7 out
of 8 in the Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg302
b:57.1
occ:1.00
|
O1B
|
G:UPG301
|
2.1
|
54.4
|
1.0
|
|
O
|
G:HOH401
|
2.1
|
85.1
|
1.0
|
|
O
|
G:HOH403
|
2.1
|
75.4
|
1.0
|
|
OD2
|
G:ASP130
|
2.2
|
61.9
|
1.0
|
|
O2A
|
G:UPG301
|
2.3
|
91.7
|
1.0
|
|
O
|
G:HOH405
|
2.4
|
68.2
|
1.0
|
|
PA
|
G:UPG301
|
3.0
|
59.1
|
1.0
|
|
O5C
|
G:UPG301
|
3.0
|
66.1
|
1.0
|
|
PB
|
G:UPG301
|
3.2
|
67.7
|
1.0
|
|
O3A
|
G:UPG301
|
3.3
|
70.6
|
1.0
|
|
CG
|
G:ASP130
|
3.4
|
63.2
|
1.0
|
|
HO6'
|
G:UPG301
|
3.7
|
70.5
|
1.0
|
|
HA3
|
G:GLY256
|
3.9
|
77.8
|
1.0
|
|
O6'
|
G:UPG301
|
3.9
|
58.8
|
1.0
|
|
HZ2
|
G:LYS25
|
3.9
|
84.4
|
1.0
|
|
OD1
|
G:ASP130
|
4.0
|
64.4
|
1.0
|
|
O2B
|
G:UPG301
|
4.1
|
63.0
|
1.0
|
|
O5'
|
G:UPG301
|
4.1
|
56.5
|
1.0
|
|
HB2
|
G:ASP130
|
4.3
|
72.5
|
1.0
|
|
O3B
|
G:UPG301
|
4.3
|
85.4
|
1.0
|
|
C5C
|
G:UPG301
|
4.3
|
72.2
|
1.0
|
|
H3C
|
G:UPG301
|
4.4
|
85.0
|
1.0
|
|
O1A
|
G:UPG301
|
4.5
|
61.0
|
1.0
|
|
CB
|
G:ASP130
|
4.5
|
60.5
|
1.0
|
|
H1'
|
G:UPG301
|
4.5
|
81.0
|
1.0
|
|
H5C2
|
G:UPG301
|
4.5
|
86.7
|
1.0
|
|
H5'
|
G:UPG301
|
4.6
|
68.4
|
1.0
|
|
C1'
|
G:UPG301
|
4.6
|
67.5
|
1.0
|
|
HZ1
|
G:LYS25
|
4.7
|
84.4
|
1.0
|
|
NZ
|
G:LYS25
|
4.7
|
70.3
|
1.0
|
|
C5'
|
G:UPG301
|
4.8
|
57.0
|
1.0
|
|
OD1
|
G:ASP131
|
4.8
|
82.0
|
1.0
|
|
CA
|
G:GLY256
|
4.8
|
64.8
|
1.0
|
|
HD12
|
G:LEU128
|
4.9
|
73.2
|
1.0
|
|
C6'
|
G:UPG301
|
4.9
|
52.9
|
1.0
|
|
HB3
|
G:ASP130
|
4.9
|
72.5
|
1.0
|
|
OD1
|
G:ASP254
|
4.9
|
76.5
|
1.0
|
|
H5C1
|
G:UPG301
|
5.0
|
86.7
|
1.0
|
|
HD13
|
G:LEU128
|
5.0
|
73.2
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 8f73
Go back to
Magnesium Binding Sites List in 8f73
Magnesium binding site 8 out
of 8 in the Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg302
b:66.5
occ:1.00
|
OD2
|
H:ASP130
|
2.0
|
71.8
|
1.0
|
|
O
|
H:HOH403
|
2.1
|
93.6
|
1.0
|
|
O1B
|
H:UPG301
|
2.2
|
56.5
|
1.0
|
|
O
|
H:HOH401
|
2.2
|
59.5
|
1.0
|
|
O
|
H:HOH402
|
2.2
|
79.4
|
1.0
|
|
O2A
|
H:UPG301
|
2.3
|
59.4
|
1.0
|
|
CG
|
H:ASP130
|
3.2
|
69.1
|
1.0
|
|
PB
|
H:UPG301
|
3.4
|
64.8
|
1.0
|
|
H5C2
|
H:UPG301
|
3.4
|
76.2
|
1.0
|
|
HO6'
|
H:UPG301
|
3.5
|
83.2
|
1.0
|
|
O6'
|
H:UPG301
|
3.6
|
69.4
|
1.0
|
|
PA
|
H:UPG301
|
3.6
|
55.7
|
1.0
|
|
HZ2
|
H:LYS25
|
3.7
|
92.0
|
1.0
|
|
HA3
|
H:GLY256
|
3.7
|
71.7
|
1.0
|
|
OD1
|
H:ASP130
|
3.8
|
73.4
|
1.0
|
|
O3A
|
H:UPG301
|
3.8
|
73.4
|
1.0
|
|
O2B
|
H:UPG301
|
4.0
|
44.8
|
1.0
|
|
HB2
|
H:ASP130
|
4.2
|
66.5
|
1.0
|
|
O5'
|
H:UPG301
|
4.2
|
56.8
|
1.0
|
|
C5C
|
H:UPG301
|
4.3
|
63.5
|
1.0
|
|
CB
|
H:ASP130
|
4.3
|
55.4
|
1.0
|
|
HZ1
|
H:LYS25
|
4.3
|
92.0
|
1.0
|
|
OD1
|
H:ASP254
|
4.4
|
67.0
|
1.0
|
|
NZ
|
H:LYS25
|
4.4
|
76.7
|
1.0
|
|
O5C
|
H:UPG301
|
4.5
|
58.9
|
1.0
|
|
O3B
|
H:UPG301
|
4.6
|
73.6
|
1.0
|
|
H5'
|
H:UPG301
|
4.6
|
91.5
|
1.0
|
|
CA
|
H:GLY256
|
4.7
|
59.7
|
1.0
|
|
H5C1
|
H:UPG301
|
4.7
|
76.2
|
1.0
|
|
HB3
|
H:ASP130
|
4.7
|
66.5
|
1.0
|
|
O1A
|
H:UPG301
|
4.7
|
64.7
|
1.0
|
|
H3C
|
H:UPG301
|
4.7
|
80.5
|
1.0
|
|
C6'
|
H:UPG301
|
4.7
|
65.3
|
1.0
|
|
H
|
H:GLY256
|
4.8
|
61.5
|
1.0
|
|
C5'
|
H:UPG301
|
4.8
|
76.2
|
1.0
|
|
HZ3
|
H:LYS25
|
4.8
|
92.0
|
1.0
|
|
C1'
|
H:UPG301
|
4.8
|
65.7
|
1.0
|
|
H1'
|
H:UPG301
|
4.9
|
78.8
|
1.0
|
|
OD1
|
H:ASP131
|
4.9
|
80.6
|
1.0
|
|
Reference:
L.Dirr,
J.Fuehring.
Crystal Structure of Pseudomonas Aeruginosa Udp-Glucose Phosphorylase in Complex with Udp-Glucose To Be Published.
Page generated: Thu Dec 28 09:02:23 2023
|
