Magnesium in PDB 8fb9: LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc

Magnesium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Magnesium atom in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc (pdb code 8fb9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 48 binding sites of Magnesium where determined in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc, PDB code: 8fb9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 48 in 8fb9

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Magnesium binding site 1 out of 48 in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg101

b:47.0
occ:1.00
 MG A:BCL101 0.0 47.0 1.0
ND A:BCL101 2.0 41.9 1.0
NB A:BCL101 2.1 47.7 1.0
NC A:BCL101 2.1 42.9 1.0
NA A:BCL101 2.1 52.4 1.0
C4D A:BCL101 2.9 47.1 1.0
C1B A:BCL101 3.1 50.1 1.0
C4B A:BCL101 3.1 48.6 1.0
C1C A:BCL101 3.1 45.6 1.0
C1D A:BCL101 3.1 45.9 1.0
C4C A:BCL101 3.1 45.6 1.0
C4A A:BCL101 3.1 54.7 1.0
C1A A:BCL101 3.1 56.9 1.0
CHA A:BCL101 3.4 50.8 1.0
CHC A:BCL101 3.4 45.2 1.0
CHB A:BCL101 3.5 49.6 1.0
CHD A:BCL101 3.5 43.2 1.0
C3D A:BCL101 4.2 46.7 1.0
C2B A:BCL101 4.3 51.7 1.0
C3B A:BCL101 4.3 53.5 1.0
C2D A:BCL101 4.3 45.8 1.0
CB A:ASP6 4.3 58.7 1.0
C2C A:BCL101 4.4 51.2 1.0
C3C A:BCL101 4.4 53.0 1.0
C2A A:BCL101 4.4 64.4 1.0
C3A A:BCL101 4.4 60.5 1.0
CB A:PRO3 4.8 81.3 1.0
CBD A:BCL101 4.9 53.3 1.0

Magnesium binding site 2 out of 48 in 8fb9

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Magnesium binding site 2 out of 48 in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg102

b:30.1
occ:1.00
 MG A:BCL102 0.0 30.1 1.0
ND A:BCL102 2.0 31.4 1.0
NB A:BCL102 2.1 30.8 1.0
NC A:BCL102 2.1 29.4 1.0
NA A:BCL102 2.2 30.9 1.0
C4D A:BCL102 3.0 32.2 1.0
C4B A:BCL102 3.1 35.0 1.0
C1D A:BCL102 3.1 33.3 1.0
C1B A:BCL102 3.1 33.9 1.0
C1C A:BCL102 3.1 30.9 1.0
C4C A:BCL102 3.1 32.0 1.0
C4A A:BCL102 3.2 28.9 1.0
C1A A:BCL102 3.2 28.0 1.0
CHC A:BCL102 3.4 33.1 1.0
CHD A:BCL102 3.5 30.8 1.0
CHA A:BCL102 3.5 31.3 1.0
CHB A:BCL102 3.5 31.8 1.0
C3D A:BCL102 4.2 33.1 1.0
C2D A:BCL102 4.3 32.5 1.0
C2B A:BCL102 4.3 29.4 1.0
C3B A:BCL102 4.3 38.8 1.0
C2C A:BCL102 4.4 32.2 1.0
C3C A:BCL102 4.4 31.9 1.0
C3A A:BCL102 4.5 25.3 1.0
C2A A:BCL102 4.5 27.7 1.0
C2B E:BCL101 4.7 28.5 1.0
CBD A:BCL102 5.0 33.9 1.0

Magnesium binding site 3 out of 48 in 8fb9

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Magnesium binding site 3 out of 48 in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg101

b:29.4
occ:1.00
 MG B:BCL101 0.0 29.4 1.0
NB B:BCL101 2.0 27.2 1.0
ND B:BCL101 2.0 31.5 1.0
NA B:BCL101 2.1 28.7 1.0
NC B:BCL101 2.2 33.4 1.0
C4D B:BCL101 3.0 30.8 1.0
C1B B:BCL101 3.0 29.8 1.0
C4B B:BCL101 3.0 31.3 1.0
C4A B:BCL101 3.1 28.4 1.0
C1D B:BCL101 3.1 32.3 1.0
C1A B:BCL101 3.2 25.0 1.0
C1C B:BCL101 3.2 30.9 1.0
C4C B:BCL101 3.2 30.3 1.0
CHB B:BCL101 3.4 29.4 1.0
CHC B:BCL101 3.5 32.0 1.0
CHA B:BCL101 3.5 28.5 1.0
CHD B:BCL101 3.5 29.9 1.0
C2B B:BCL101 4.2 28.5 1.0
C3D B:BCL101 4.2 33.0 1.0
C3B B:BCL101 4.3 36.9 1.0
C2D B:BCL101 4.3 31.7 1.0
C3A B:BCL101 4.4 26.8 1.0
C2A B:BCL101 4.5 27.4 1.0
C2C B:BCL101 4.5 31.0 1.0
C3C B:BCL101 4.5 32.8 1.0
CBD B:BCL101 5.0 34.7 1.0

Magnesium binding site 4 out of 48 in 8fb9

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Magnesium binding site 4 out of 48 in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg102

b:47.0
occ:1.00
 MG D:BCL102 0.0 47.0 1.0
ND D:BCL102 2.0 41.9 1.0
NB D:BCL102 2.1 47.7 1.0
NC D:BCL102 2.1 42.9 1.0
NA D:BCL102 2.1 52.4 1.0
C4D D:BCL102 2.9 47.1 1.0
C1B D:BCL102 3.1 50.1 1.0
C4B D:BCL102 3.1 48.6 1.0
C1C D:BCL102 3.1 45.6 1.0
C1D D:BCL102 3.1 45.9 1.0
C4C D:BCL102 3.1 45.6 1.0
C4A D:BCL102 3.1 54.7 1.0
C1A D:BCL102 3.1 56.9 1.0
CHA D:BCL102 3.4 50.8 1.0
CHC D:BCL102 3.4 45.2 1.0
CHB D:BCL102 3.5 49.6 1.0
CHD D:BCL102 3.5 43.2 1.0
C3D D:BCL102 4.2 46.7 1.0
C2B D:BCL102 4.3 51.7 1.0
C3B D:BCL102 4.3 53.5 1.0
C2D D:BCL102 4.3 45.8 1.0
CB D:ASP6 4.3 58.7 1.0
C2C D:BCL102 4.4 51.2 1.0
C3C D:BCL102 4.4 53.0 1.0
C2A D:BCL102 4.4 64.4 1.0
C3A D:BCL102 4.4 60.5 1.0
CB D:PRO3 4.8 81.3 1.0
CBD D:BCL102 4.9 53.3 1.0

Magnesium binding site 5 out of 48 in 8fb9

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Magnesium binding site 5 out of 48 in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg103

b:30.1
occ:1.00
 MG D:BCL103 0.0 30.1 1.0
ND D:BCL103 2.0 31.4 1.0
NB D:BCL103 2.1 30.8 1.0
NC D:BCL103 2.1 29.4 1.0
NA D:BCL103 2.2 30.9 1.0
C4D D:BCL103 3.0 32.2 1.0
C4B D:BCL103 3.1 35.0 1.0
C1D D:BCL103 3.1 33.3 1.0
C1B D:BCL103 3.1 33.9 1.0
C1C D:BCL103 3.1 30.9 1.0
C4C D:BCL103 3.1 32.0 1.0
C4A D:BCL103 3.2 28.9 1.0
C1A D:BCL103 3.2 28.0 1.0
CHC D:BCL103 3.4 33.1 1.0
CHD D:BCL103 3.5 30.8 1.0
CHA D:BCL103 3.5 31.3 1.0
CHB D:BCL103 3.5 31.8 1.0
C3D D:BCL103 4.2 33.1 1.0
C2D D:BCL103 4.3 32.5 1.0
C2B D:BCL103 4.3 29.4 1.0
C3B D:BCL103 4.3 38.8 1.0
C2C D:BCL103 4.4 32.2 1.0
C3C D:BCL103 4.4 31.9 1.0
C3A D:BCL103 4.5 25.3 1.0
C2A D:BCL103 4.5 27.7 1.0
C2B J:BCL101 4.9 28.5 1.0
CBD D:BCL103 5.0 33.9 1.0

Magnesium binding site 6 out of 48 in 8fb9

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Magnesium binding site 6 out of 48 in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg101

b:29.4
occ:1.00
 MG E:BCL101 0.0 29.4 1.0
NB E:BCL101 2.0 27.2 1.0
ND E:BCL101 2.0 31.5 1.0
NA E:BCL101 2.1 28.7 1.0
NC E:BCL101 2.2 33.4 1.0
C4D E:BCL101 3.0 30.8 1.0
C1B E:BCL101 3.0 29.8 1.0
C4B E:BCL101 3.0 31.3 1.0
C4A E:BCL101 3.1 28.4 1.0
C1D E:BCL101 3.1 32.3 1.0
C1A E:BCL101 3.2 25.0 1.0
C1C E:BCL101 3.2 30.9 1.0
C4C E:BCL101 3.2 30.3 1.0
CHB E:BCL101 3.4 29.4 1.0
CHC E:BCL101 3.5 32.0 1.0
CHA E:BCL101 3.5 28.5 1.0
CHD E:BCL101 3.5 29.9 1.0
C2B E:BCL101 4.2 28.5 1.0
C3D E:BCL101 4.2 33.0 1.0
C3B E:BCL101 4.3 36.9 1.0
C2D E:BCL101 4.3 31.7 1.0
C3A E:BCL101 4.4 26.8 1.0
C2A E:BCL101 4.5 27.4 1.0
C2C E:BCL101 4.5 31.0 1.0
C3C E:BCL101 4.5 32.8 1.0
CBD E:BCL101 5.0 34.7 1.0

Magnesium binding site 7 out of 48 in 8fb9

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Magnesium binding site 7 out of 48 in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg101

b:47.0
occ:1.00
 MG C:BCL101 0.0 47.0 1.0
ND C:BCL101 2.0 41.9 1.0
NB C:BCL101 2.1 47.7 1.0
NC C:BCL101 2.1 42.9 1.0
NA C:BCL101 2.1 52.4 1.0
C4D C:BCL101 2.9 47.1 1.0
C1B C:BCL101 3.1 50.1 1.0
C4B C:BCL101 3.1 48.6 1.0
C1C C:BCL101 3.1 45.6 1.0
C1D C:BCL101 3.1 45.9 1.0
C4C C:BCL101 3.1 45.6 1.0
C4A C:BCL101 3.1 54.7 1.0
C1A C:BCL101 3.1 56.9 1.0
CHA C:BCL101 3.4 50.8 1.0
CHC C:BCL101 3.4 45.2 1.0
CHB C:BCL101 3.5 49.6 1.0
CHD C:BCL101 3.5 43.2 1.0
C3D C:BCL101 4.2 46.7 1.0
C2B C:BCL101 4.3 51.7 1.0
C3B C:BCL101 4.3 53.5 1.0
C2D C:BCL101 4.3 45.8 1.0
CB C:ASP6 4.3 58.7 1.0
C2C C:BCL101 4.4 51.2 1.0
C3C C:BCL101 4.4 53.0 1.0
C2A C:BCL101 4.4 64.4 1.0
C3A C:BCL101 4.4 60.5 1.0
CB C:PRO3 4.8 81.3 1.0
CBD C:BCL101 4.9 53.3 1.0

Magnesium binding site 8 out of 48 in 8fb9

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Magnesium binding site 8 out of 48 in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg102

b:30.1
occ:1.00
 MG C:BCL102 0.0 30.1 1.0
ND C:BCL102 2.0 31.4 1.0
NB C:BCL102 2.1 30.8 1.0
NC C:BCL102 2.1 29.4 1.0
NA C:BCL102 2.2 30.9 1.0
C4D C:BCL102 3.0 32.2 1.0
C4B C:BCL102 3.1 35.0 1.0
C1D C:BCL102 3.1 33.3 1.0
C1B C:BCL102 3.1 33.9 1.0
C1C C:BCL102 3.1 30.9 1.0
C4C C:BCL102 3.1 32.0 1.0
C4A C:BCL102 3.2 28.9 1.0
C1A C:BCL102 3.2 28.0 1.0
CHC C:BCL102 3.4 33.1 1.0
CHD C:BCL102 3.5 30.8 1.0
CHA C:BCL102 3.5 31.3 1.0
CHB C:BCL102 3.5 31.8 1.0
C3D C:BCL102 4.2 33.1 1.0
C2D C:BCL102 4.3 32.5 1.0
C3B C:BCL102 4.3 38.8 1.0
C2B C:BCL102 4.3 29.4 1.0
C2C C:BCL102 4.4 32.2 1.0
C3C C:BCL102 4.4 31.9 1.0
C3A C:BCL102 4.5 25.3 1.0
C2A C:BCL102 4.5 27.7 1.0
C2B H:BCL101 4.7 28.5 1.0
CBD C:BCL102 5.0 33.9 1.0

Magnesium binding site 9 out of 48 in 8fb9

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Magnesium binding site 9 out of 48 in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg101

b:29.4
occ:1.00
 MG F:BCL101 0.0 29.4 1.0
NB F:BCL101 2.0 27.2 1.0
ND F:BCL101 2.0 31.5 1.0
NA F:BCL101 2.1 28.7 1.0
NC F:BCL101 2.2 33.4 1.0
C4D F:BCL101 3.0 30.8 1.0
C1B F:BCL101 3.0 29.8 1.0
C4B F:BCL101 3.0 31.3 1.0
C4A F:BCL101 3.1 28.4 1.0
C1D F:BCL101 3.1 32.3 1.0
C1A F:BCL101 3.2 25.0 1.0
C1C F:BCL101 3.2 30.9 1.0
C4C F:BCL101 3.2 30.3 1.0
CHB F:BCL101 3.4 29.4 1.0
CHC F:BCL101 3.5 32.0 1.0
CHA F:BCL101 3.5 28.5 1.0
CHD F:BCL101 3.5 29.9 1.0
C2B F:BCL101 4.2 28.5 1.0
C3D F:BCL101 4.2 33.0 1.0
C3B F:BCL101 4.3 36.9 1.0
C2D F:BCL101 4.3 31.7 1.0
C3A F:BCL101 4.4 26.8 1.0
C2A F:BCL101 4.4 27.4 1.0
C2C F:BCL101 4.5 31.0 1.0
C3C F:BCL101 4.5 32.8 1.0
CBD F:BCL101 5.0 34.7 1.0

Magnesium binding site 10 out of 48 in 8fb9

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Magnesium binding site 10 out of 48 in the LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of LH2-LH3 Antenna in Anti Parallel Configuration Embedded in A Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg102

b:47.0
occ:1.00
 MG G:BCL102 0.0 47.0 1.0
ND G:BCL102 2.0 41.9 1.0
NB G:BCL102 2.1 47.7 1.0
NC G:BCL102 2.1 42.9 1.0
NA G:BCL102 2.1 52.4 1.0
C4D G:BCL102 2.9 47.1 1.0
C1B G:BCL102 3.1 50.1 1.0
C4B G:BCL102 3.1 48.6 1.0
C1C G:BCL102 3.1 45.6 1.0
C1D G:BCL102 3.1 45.9 1.0
C4C G:BCL102 3.1 45.6 1.0
C4A G:BCL102 3.1 54.7 1.0
C1A G:BCL102 3.1 56.9 1.0
CHA G:BCL102 3.4 50.8 1.0
CHC G:BCL102 3.4 45.2 1.0
CHB G:BCL102 3.5 49.6 1.0
CHD G:BCL102 3.5 43.2 1.0
C3D G:BCL102 4.2 46.7 1.0
C2B G:BCL102 4.3 51.7 1.0
C3B G:BCL102 4.3 53.5 1.0
CB G:ASP6 4.3 58.7 1.0
C2D G:BCL102 4.3 45.8 1.0
C2C G:BCL102 4.4 51.2 1.0
C3C G:BCL102 4.4 53.0 1.0
C2A G:BCL102 4.4 64.4 1.0
C3A G:BCL102 4.4 60.5 1.0
CB G:PRO3 4.8 81.3 1.0
CBD G:BCL102 4.9 53.3 1.0

Reference:

D.Wang, O.C.Fiebig, D.Harris, H.Toporik, Y.Ji, C.Chuang, M.Nairat, A.L.Tong, J.I.Ogren, S.M.Hart, J.Cao, J.N.Sturgis, Y.Mazor, G.S.Schlau-Cohen. Elucidating Interprotein Energy Transfer Dynamics Within the Antenna Network From Purple Bacteria. Proc.Natl.Acad.Sci.Usa V. 120 77120 2023.
ISSN: ESSN 1091-6490
PubMed: 37399405
DOI: 10.1073/PNAS.2220477120
Page generated: Thu Jul 27 23:45:33 2023

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