Atomistry » Magnesium » PDB 8f72-8fhz » 8fcw
Atomistry »
  Magnesium »
    PDB 8f72-8fhz »
      8fcw »

Magnesium in PDB 8fcw: Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System (pdb code 8fcw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System, PDB code: 8fcw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 8fcw

Go back to Magnesium Binding Sites List in 8fcw
Magnesium binding site 1 out of 5 in the Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Mg601

b:161.4
occ:1.00
O3B R:ATP600 2.1 167.1 1.0
O3A R:ATP600 2.1 167.1 1.0
OG1 R:THR64 2.3 162.2 1.0
O2A R:ATP600 2.3 167.1 1.0
PA R:ATP600 2.5 167.1 1.0
O3G R:ATP600 2.6 167.1 1.0
PB R:ATP600 2.6 167.1 1.0
PG R:ATP600 2.7 167.1 1.0
O5' R:ATP600 2.8 167.1 1.0
O1G R:ATP600 3.2 167.1 1.0
CB R:THR64 3.3 162.2 1.0
O1B R:ATP600 3.4 167.1 1.0
N R:THR64 3.6 162.2 1.0
O2B R:ATP600 3.7 167.1 1.0
O1A R:ATP600 3.9 167.1 1.0
C5' R:ATP600 4.0 167.1 1.0
CA R:THR64 4.1 162.2 1.0
O2G R:ATP600 4.1 167.1 1.0
N R:LYS63 4.4 156.1 1.0
CG2 R:THR64 4.5 162.2 1.0
C R:LYS63 4.7 156.1 1.0
CB R:LYS63 4.8 156.1 1.0
CA R:LYS63 4.9 156.1 1.0
NH2 S:ARG223 4.9 155.8 1.0
NH1 S:ARG223 5.0 155.8 1.0

Magnesium binding site 2 out of 5 in 8fcw

Go back to Magnesium Binding Sites List in 8fcw
Magnesium binding site 2 out of 5 in the Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Mg601

b:147.3
occ:1.00
O3B S:ATP600 2.0 156.6 1.0
O1G S:ATP600 2.1 156.6 1.0
O3A S:ATP600 2.1 156.6 1.0
OG1 S:THR64 2.4 144.3 1.0
PG S:ATP600 2.5 156.6 1.0
PB S:ATP600 2.6 156.6 1.0
PA S:ATP600 2.9 156.6 1.0
O2A S:ATP600 3.0 156.6 1.0
O5' S:ATP600 3.2 156.6 1.0
O1B S:ATP600 3.3 156.6 1.0
CB S:THR64 3.5 144.3 1.0
O3G S:ATP600 3.5 156.6 1.0
O2B S:ATP600 3.6 156.6 1.0
O2G S:ATP600 3.7 156.6 1.0
N S:THR64 3.8 144.3 1.0
CA S:THR64 4.2 144.3 1.0
O1A S:ATP600 4.3 156.6 1.0
C5' S:ATP600 4.4 156.6 1.0
CG2 S:THR64 4.6 144.3 1.0
N S:LYS63 4.7 144.0 1.0
CB S:LYS63 4.7 144.0 1.0
NH1 T:ARG223 4.8 142.8 1.0
NH2 T:ARG224 4.8 147.3 1.0
C S:LYS63 4.8 144.0 1.0
CE S:LYS63 4.9 144.0 1.0
NH1 T:ARG224 5.0 147.3 1.0
CA S:LYS63 5.0 144.0 1.0

Magnesium binding site 3 out of 5 in 8fcw

Go back to Magnesium Binding Sites List in 8fcw
Magnesium binding site 3 out of 5 in the Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Mg601

b:148.1
occ:1.00
O3B T:ATP600 2.0 160.3 1.0
O3A T:ATP600 2.1 160.3 1.0
OG1 T:THR64 2.2 144.8 1.0
O1G T:ATP600 2.3 160.3 1.0
PB T:ATP600 2.6 160.3 1.0
PG T:ATP600 2.6 160.3 1.0
O2A T:ATP600 2.7 160.3 1.0
PA T:ATP600 2.8 160.3 1.0
O5' T:ATP600 3.1 160.3 1.0
CB T:THR64 3.2 144.8 1.0
O1B T:ATP600 3.4 160.3 1.0
N T:THR64 3.6 144.8 1.0
O2B T:ATP600 3.6 160.3 1.0
O3G T:ATP600 3.6 160.3 1.0
O2G T:ATP600 3.7 160.3 1.0
CA T:THR64 4.0 144.8 1.0
O1A T:ATP600 4.2 160.3 1.0
C5' T:ATP600 4.3 160.3 1.0
CG2 T:THR64 4.4 144.8 1.0
N T:LYS63 4.6 144.1 1.0
C T:LYS63 4.7 144.1 1.0
CB T:LYS63 4.8 144.1 1.0
NH2 U:ARG223 4.9 152.9 1.0
CA T:LYS63 4.9 144.1 1.0

Magnesium binding site 4 out of 5 in 8fcw

Go back to Magnesium Binding Sites List in 8fcw
Magnesium binding site 4 out of 5 in the Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Mg601

b:138.8
occ:1.00
O3B U:ATP600 2.0 151.8 1.0
O3A U:ATP600 2.1 151.8 1.0
OG1 U:THR64 2.3 146.0 1.0
PB U:ATP600 2.5 151.8 1.0
O1G U:ATP600 2.6 151.8 1.0
PG U:ATP600 2.8 151.8 1.0
PA U:ATP600 3.1 151.8 1.0
O2A U:ATP600 3.2 151.8 1.0
CB U:THR64 3.2 146.0 1.0
O5' U:ATP600 3.3 151.8 1.0
O1B U:ATP600 3.4 151.8 1.0
O2B U:ATP600 3.6 151.8 1.0
O3G U:ATP600 3.7 151.8 1.0
N U:THR64 3.8 146.0 1.0
O2G U:ATP600 4.0 151.8 1.0
CA U:THR64 4.1 146.0 1.0
CG2 U:THR64 4.4 146.0 1.0
O1A U:ATP600 4.4 151.8 1.0
C5' U:ATP600 4.4 151.8 1.0
NH2 V:ARG223 4.6 143.7 1.0
N U:LYS63 4.8 142.2 1.0
C U:LYS63 4.9 142.2 1.0
CB U:LYS63 5.0 142.2 1.0

Magnesium binding site 5 out of 5 in 8fcw

Go back to Magnesium Binding Sites List in 8fcw
Magnesium binding site 5 out of 5 in the Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Tnsc-Dna Complex in Type I-B Cast System within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Mg601

b:152.4
occ:1.00
O1G V:ATP600 2.0 168.4 1.0
O3A V:ATP600 2.0 168.4 1.0
O3B V:ATP600 2.1 168.4 1.0
O2A V:ATP600 2.2 168.4 1.0
PA V:ATP600 2.4 168.4 1.0
PG V:ATP600 2.5 168.4 1.0
OG1 V:THR64 2.5 150.8 1.0
PB V:ATP600 2.6 168.4 1.0
O5' V:ATP600 2.8 168.4 1.0
CB V:THR64 3.4 150.8 1.0
O2G V:ATP600 3.4 168.4 1.0
O1B V:ATP600 3.4 168.4 1.0
N V:THR64 3.5 150.8 1.0
O2B V:ATP600 3.6 168.4 1.0
O3G V:ATP600 3.7 168.4 1.0
O1A V:ATP600 3.8 168.4 1.0
C5' V:ATP600 3.9 168.4 1.0
CA V:THR64 4.0 150.8 1.0
N V:LYS63 4.1 153.4 1.0
C V:LYS63 4.5 153.4 1.0
CB V:LYS63 4.6 153.4 1.0
CG2 V:THR64 4.6 150.8 1.0
CA V:LYS63 4.6 153.4 1.0
C V:GLY62 4.9 152.0 1.0

Reference:

S.Wang, C.Gabel, R.Siddique, T.Klose, L.Chang. Cryo-Em Structure of Cascade-Dna Complex with 23 Bp Recognized in Type I-B Cast System Cell(Cambridge,Mass.) 2023.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2023.07.010
Page generated: Fri Oct 4 02:27:44 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy