Magnesium in PDB 8fd6: Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI

The structure of Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI also contains other interesting chemical elements:

Vanadium

(V)

1 atom

The binding sites of Magnesium atom in the Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI (pdb code 8fd6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI, PDB code: 8fd6:

Magnesium binding site 1 out of 1 in the Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3206 b:56.9 occ:1.00 O1 A:VO43205 1.8 57.9 1.0 OG1 A:THR458 2.0 52.9 1.0 O2B A:ADP3204 2.1 57.9 1.0 O1A A:ADP3204 2.8 57.9 1.0 CB A:THR458 2.9 52.9 1.0 PB A:ADP3204 3.3 57.9 1.0 O1B A:ADP3204 3.5 57.9 1.0 N A:THR458 3.6 52.9 1.0 V A:VO43205 3.7 57.9 1.0 PA A:ADP3204 3.8 57.9 1.0 CA A:THR458 3.9 52.9 1.0 CG2 A:THR458 4.1 52.9 1.0 O3A A:ADP3204 4.1 57.9 1.0 OD1 A:ASP503 4.2 55.8 1.0 NH2 A:ARG903 4.3 57.0 1.0 O2A A:ADP3204 4.4 57.9 1.0 OG1 A:THR562 4.4 52.2 1.0 CG A:ASP503 4.4 55.8 1.0 O2 A:VO43205 4.4 57.9 1.0 O3B A:ADP3204 4.5 57.9 1.0 OD2 A:ASP503 4.5 55.8 1.0 O4 A:VO43205 4.7 57.9 1.0 NH2 A:ARG636 4.8 57.1 1.0 C A:LYS457 4.8 52.0 1.0 CB A:LYS457 4.9 52.0 1.0 O3 A:VO43205 4.9 57.9 1.0 OE2 A:GLU504 4.9 58.0 1.0

W.D.Ton, Y.Wang, P.Chai, C.Beauchamp-Perez, N.T.Flint, L.G.Lammers, H.Xiong, K.Zhang, S.M.Markus. Microtubule-Binding-Induced Allostery Triggers LIS1 Dissociation From Dynein Prior to Cargo Transport Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-01010-X