Magnesium in PDB 8fdq: An at-Specific Dna 5-Cgcaaatttcgc-3' with Benzimidazole (DB1476) Complex

The structure of An at-Specific Dna 5-Cgcaaatttcgc-3' with Benzimidazole (DB1476) Complex, PDB code: 8fdq was solved by E.N.Ogboona, W.D.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.97 / 1.54
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	24.38, 38.98, 60.8, 90, 90, 90
R / Rfree (%)	20.4 / 24.2

The binding sites of Magnesium atom in the An at-Specific Dna 5-Cgcaaatttcgc-3' with Benzimidazole (DB1476) Complex (pdb code 8fdq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the An at-Specific Dna 5-Cgcaaatttcgc-3' with Benzimidazole (DB1476) Complex, PDB code: 8fdq:

Magnesium binding site 1 out of 1 in the An at-Specific Dna 5-Cgcaaatttcgc-3' with Benzimidazole (DB1476) Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of An at-Specific Dna 5-Cgcaaatttcgc-3' with Benzimidazole (DB1476) Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:25.9 occ:1.00 O B:HOH206 2.0 29.6 1.0 O C:HOH206 2.0 24.3 1.0 O C:HOH209 2.2 29.2 1.0 O6 B:DG10 3.9 18.5 1.0 O C:HOH236 4.1 36.9 1.0 H5 C:DC13 4.2 29.7 1.0 O6 C:DG14 4.2 18.8 1.0 N7 C:DG14 4.2 22.7 1.0 O B:HOH207 4.3 27.8 1.0 H42 C:DC15 4.5 26.4 1.0 C5 C:DC13 4.6 24.8 1.0 H41 C:DC15 4.7 26.4 1.0 O B:HOH215 4.8 34.4 1.0 C6 B:DG10 4.8 16.5 1.0 N4 C:DC15 4.8 22.1 1.0 C6 C:DG14 5.0 18.3 1.0

E.N.Ogbonna, A.Paul, A.Faharat, J.R.Terrell, V.Ogbonna, D.W.Boykin, W.D.Wilson. X-Ray Structure Characterization of the Selective Recognition of at Base Pair Sequences Acs Bio Med Chem Au 2023.
ISSN: ESSN 2694-2437