Magnesium in PDB 8fdr: Structure of A Dodecamer Complex: 5'-Cgcgaaaagccg-3-DB1476

The structure of Structure of A Dodecamer Complex: 5'-Cgcgaaaagccg-3-DB1476, PDB code: 8fdr was solved by E.Ogbonna, W.D.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.52 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	25.761, 39.84, 66.469, 90, 90, 90
R / Rfree (%)	22 / 24.7

The binding sites of Magnesium atom in the Structure of A Dodecamer Complex: 5'-Cgcgaaaagccg-3-DB1476 (pdb code 8fdr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of A Dodecamer Complex: 5'-Cgcgaaaagccg-3-DB1476, PDB code: 8fdr:

Magnesium binding site 1 out of 1 in the Structure of A Dodecamer Complex: 5'-Cgcgaaaagccg-3-DB1476


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Dodecamer Complex: 5'-Cgcgaaaagccg-3-DB1476 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg102 b:31.0 occ:1.00 O B:HOH219 2.0 24.4 1.0 O B:HOH216 2.1 25.8 1.0 O B:HOH223 2.2 23.9 1.0 H3' B:DA6 4.1 30.7 1.0 O B:HOH241 4.1 34.1 1.0 OP1 B:DA6 4.2 29.9 1.0 O B:HOH239 4.3 36.2 1.0 OP2 B:DA7 4.4 27.2 1.0 O B:HOH210 4.4 25.8 1.0 OP2 B:DA6 4.5 30.0 1.0 O5' B:DA6 4.6 26.6 1.0 P B:DA6 4.6 29.1 1.0 H5'' B:DA6 4.8 31.4 1.0 O B:HOH214 5.0 37.5 1.0 C3' B:DA6 5.0 25.6 1.0

E.N.Ogbonna, A.Paul, A.Faharat, J.R.Terrell, V.Ogbonna, D.W.Boykin, W.D.Wilson. X-Ray Structure Characterization of the Selective Recognition of at Base Pair Sequences Acs Bio Med Chem Au 2023.
ISSN: ESSN 2694-2437