Atomistry » Magnesium » PDB 8fi7-8fs7 » 8fnh
Atomistry »
  Magnesium »
    PDB 8fi7-8fs7 »
      8fnh »

Magnesium in PDB 8fnh: Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound

Other elements in 8fnh:

The structure of Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound (pdb code 8fnh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound, PDB code: 8fnh:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 8fnh

Go back to Magnesium Binding Sites List in 8fnh
Magnesium binding site 1 out of 4 in the Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:44.9
occ:1.00
OAE A:DLU304 1.4 50.6 1.0
O A:HOH410 1.9 45.2 1.0
O A:HOH416 2.0 38.1 1.0
OD2 A:ASP116 2.0 56.0 1.0
OD1 A:ASP64 2.1 40.6 1.0
OAC A:DLU304 2.3 50.4 1.0
CAW A:DLU304 2.8 34.8 1.0
CG A:ASP64 3.1 41.3 1.0
CAS A:DLU304 3.1 42.7 1.0
CG A:ASP116 3.2 48.1 1.0
OD2 A:ASP64 3.3 43.0 1.0
MG A:MG302 3.5 44.1 1.0
CAY A:DLU304 3.5 43.8 1.0
O A:HOH413 3.5 37.7 1.0
OD1 A:ASP116 3.7 53.4 1.0
CAZ A:DLU304 3.9 43.6 1.0
OAD A:DLU304 4.0 51.4 1.0
O A:HOH412 4.0 45.6 1.0
N1 F:DA21 4.2 51.5 0.6
OE2 A:GLU152 4.3 48.4 1.0
NBC A:DLU304 4.3 46.8 1.0
O A:CYS65 4.4 57.1 1.0
CB A:ASP116 4.4 31.9 1.0
C2 F:DA21 4.4 48.3 0.6
CB A:ASP64 4.4 39.6 1.0
N A:CYS65 4.5 48.1 1.0
CBA A:DLU304 4.8 48.6 1.0
CA A:ASP64 4.8 38.4 1.0
NBD A:DLU304 4.8 45.6 1.0
C6 F:DA21 5.0 51.9 0.6

Magnesium binding site 2 out of 4 in 8fnh

Go back to Magnesium Binding Sites List in 8fnh
Magnesium binding site 2 out of 4 in the Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:44.1
occ:1.00
OAD A:DLU304 1.9 51.4 1.0
OD2 A:ASP64 2.1 43.0 1.0
OE1 A:GLU152 2.1 43.4 1.0
OE2 A:GLU152 2.1 48.4 1.0
O A:HOH412 2.1 45.6 1.0
CD A:GLU152 2.4 47.1 1.0
OAE A:DLU304 2.6 50.6 1.0
CAZ A:DLU304 2.8 43.6 1.0
CG A:ASP64 3.1 41.3 1.0
CAW A:DLU304 3.1 34.8 1.0
MG A:MG301 3.5 44.9 1.0
OD1 A:ASP64 3.5 40.6 1.0
O A:HOH413 3.5 37.7 1.0
ND2 A:ASN155 3.8 44.6 1.0
CG A:GLU152 3.9 34.8 1.0
CAX A:DLU304 4.1 35.6 1.0
O A:HOH410 4.3 45.2 1.0
C5' F:DA21 4.3 51.2 0.4
CB A:ASP64 4.4 39.6 1.0
FAG A:DLU304 4.4 59.4 1.0
OP1 F:DA21 4.5 51.2 0.6
NAP A:DLU304 4.5 41.3 1.0
C2 F:DA21 4.6 48.3 0.6
CAY A:DLU304 4.6 43.8 1.0
O A:CYS65 4.7 57.1 1.0
CB A:GLU152 4.7 39.2 1.0
CAR A:DLU304 4.8 40.4 1.0
OD2 A:ASP116 4.8 56.0 1.0
OP1 F:DA21 4.9 51.4 0.4
N3 F:DA21 4.9 45.9 0.6
CA A:GLU152 4.9 41.8 1.0

Magnesium binding site 3 out of 4 in 8fnh

Go back to Magnesium Binding Sites List in 8fnh
Magnesium binding site 3 out of 4 in the Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg301

b:44.9
occ:1.00
OAE G:DLU304 1.5 50.6 1.0
O G:HOH411 1.9 45.2 1.0
O G:HOH416 2.0 38.1 1.0
OD2 G:ASP116 2.0 56.0 1.0
OD1 G:ASP64 2.1 40.6 1.0
OAC G:DLU304 2.3 50.4 1.0
CAW G:DLU304 2.8 34.8 1.0
CG G:ASP64 3.1 41.3 1.0
CAS G:DLU304 3.1 42.7 1.0
CG G:ASP116 3.2 48.1 1.0
OD2 G:ASP64 3.3 43.0 1.0
MG G:MG302 3.5 44.1 1.0
CAY G:DLU304 3.5 43.8 1.0
O G:HOH413 3.5 37.7 1.0
OD1 G:ASP116 3.7 53.4 1.0
CAZ G:DLU304 3.9 43.6 1.0
OAD G:DLU304 4.0 51.4 1.0
O G:HOH412 4.0 45.6 1.0
N1 L:DA21 4.2 51.5 0.6
OE2 G:GLU152 4.3 48.4 1.0
NBC G:DLU304 4.3 46.8 1.0
O G:CYS65 4.4 57.1 1.0
CB G:ASP116 4.4 31.9 1.0
C2 L:DA21 4.4 48.3 0.6
CB G:ASP64 4.4 39.6 1.0
N G:CYS65 4.5 48.1 1.0
CBA G:DLU304 4.8 48.6 1.0
CA G:ASP64 4.8 38.4 1.0
NBD G:DLU304 4.8 45.6 1.0
C6 L:DA21 5.0 51.9 0.6

Magnesium binding site 4 out of 4 in 8fnh

Go back to Magnesium Binding Sites List in 8fnh
Magnesium binding site 4 out of 4 in the Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Q148K Hiv-1 Intasome with Dolutegravir Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg302

b:44.1
occ:1.00
OAD G:DLU304 1.9 51.4 1.0
OD2 G:ASP64 2.1 43.0 1.0
OE1 G:GLU152 2.1 43.4 1.0
OE2 G:GLU152 2.1 48.4 1.0
O G:HOH412 2.1 45.6 1.0
CD G:GLU152 2.4 47.1 1.0
OAE G:DLU304 2.6 50.6 1.0
CAZ G:DLU304 2.8 43.6 1.0
CG G:ASP64 3.1 41.3 1.0
CAW G:DLU304 3.1 34.8 1.0
MG G:MG301 3.5 44.9 1.0
OD1 G:ASP64 3.5 40.6 1.0
O G:HOH413 3.5 37.7 1.0
ND2 G:ASN155 3.8 44.6 1.0
CG G:GLU152 3.9 34.8 1.0
CAX G:DLU304 4.1 35.6 1.0
O G:HOH411 4.3 45.2 1.0
C5' L:DA21 4.3 51.2 0.4
CB G:ASP64 4.4 39.6 1.0
FAG G:DLU304 4.4 59.4 1.0
OP1 L:DA21 4.5 51.2 0.6
NAP G:DLU304 4.5 41.3 1.0
C2 L:DA21 4.6 48.3 0.6
CAY G:DLU304 4.6 43.8 1.0
O G:CYS65 4.7 57.1 1.0
CB G:GLU152 4.7 39.2 1.0
CAR G:DLU304 4.8 40.4 1.0
OD2 G:ASP116 4.8 56.0 1.0
OP1 L:DA21 4.9 51.4 0.4
N3 L:DA21 4.9 45.9 0.6
CA G:GLU152 4.9 41.8 1.0

Reference:

M.Li, D.Oliveira Passos, Z.Shan, S.J.Smith, Q.Sun, A.Biswas, I.Choudhuri, T.S.Strutzenberg, A.Haldane, N.Deng, Z.Li, X.Z.Zhao, L.Briganti, M.Kvaratskhelia, T.R.Burke Jr., R.M.Levy, S.H.Hughes, R.Craigie, D.Lyumkis. Mechanisms of Hiv-1 Integrase Resistance to Dolutegravir and Potent Inhibition of Drug-Resistant Variants. Sci Adv V. 9 G5953 2023.
ISSN: ESSN 2375-2548
PubMed: 37478179
DOI: 10.1126/SCIADV.ADG5953
Page generated: Fri Oct 4 02:43:52 2024

Last articles

Cl in 2QG4
Cl in 2QHF
Cl in 2QGW
Cl in 2QF7
Cl in 2QA4
Cl in 2QEI
Cl in 2QEP
Cl in 2QE5
Cl in 2QE3
Cl in 2QDY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy