Atomistry » Magnesium » PDB 8fs8-8g47 » 8fw4
Atomistry »
  Magnesium »
    PDB 8fs8-8g47 »
      8fw4 »

Magnesium in PDB 8fw4: Crystal Structure of the Adenosylcobalamin Riboswitch Holo Conformation in Absence of Ligand

Protein crystallography data

The structure of Crystal Structure of the Adenosylcobalamin Riboswitch Holo Conformation in Absence of Ligand, PDB code: 8fw4 was solved by J.R.Stagno, Y.-X.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.78 / 4.30
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 96.124, 243.844, 84.554, 90, 90, 90
R / Rfree (%) 26.3 / 29.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Adenosylcobalamin Riboswitch Holo Conformation in Absence of Ligand (pdb code 8fw4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Adenosylcobalamin Riboswitch Holo Conformation in Absence of Ligand, PDB code: 8fw4:

Magnesium binding site 1 out of 1 in 8fw4

Go back to Magnesium Binding Sites List in 8fw4
Magnesium binding site 1 out of 1 in the Crystal Structure of the Adenosylcobalamin Riboswitch Holo Conformation in Absence of Ligand


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Adenosylcobalamin Riboswitch Holo Conformation in Absence of Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Mg301

b:284.6
occ:0.50
OP1 Z:A142 2.5 341.4 1.0
N7 Z:G143 3.5 325.4 1.0
OP2 Z:G143 3.6 334.7 1.0
P Z:A142 3.7 338.6 1.0
OP2 Z:A142 4.0 334.2 1.0
H8 Z:G143 4.2 279.3 1.0
C8 Z:G143 4.2 321.5 1.0
O6 Z:G144 4.4 326.6 1.0
C5 Z:G143 4.4 321.4 1.0
O6 Z:G143 4.5 328.9 1.0
N7 Z:G144 4.5 316.1 1.0
O5' Z:A142 4.7 334.2 1.0
C6 Z:G143 4.8 323.2 1.0
O3' Z:G141 4.8 345.1 1.0
P Z:G143 4.9 330.7 1.0
H5'' Z:A142 5.0 279.3 1.0

Reference:

J.Ding, J.R.Stagno. Crystal Structure of Cobalamin Ribositch in Holo Conformation Without Ligand Nucleic Acids Res. 2023.
ISSN: ESSN 1362-4962
Page generated: Fri Oct 4 02:54:56 2024

Last articles

Cl in 3LAK
Cl in 3L88
Cl in 3L9G
Cl in 3L7I
Cl in 3L7L
Cl in 3L7K
Cl in 3L6T
Cl in 3L6H
Cl in 3L4P
Cl in 3L5O
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy