Magnesium in PDB 8g0c: Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)

Enzymatic activity of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)

All present enzymatic activity of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model):
7.1.2.2;

Other elements in 8g0c:

The structure of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) also contains other interesting chemical elements:

Bromine (Br) 7 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) (pdb code 8g0c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model), PDB code: 8g0c:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 8g0c

Go back to Magnesium Binding Sites List in 8g0c
Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:41.9
occ:1.00
 O2G B:ATP600 1.9 46.2 1.0
O1B B:ATP600 2.4 46.2 1.0
PG B:ATP600 3.1 46.2 1.0
O3B B:ATP600 3.3 46.2 1.0
PB B:ATP600 3.4 46.2 1.0
O3G B:ATP600 3.9 46.2 1.0
N B:THR179 4.0 44.1 1.0
CA B:THR179 4.1 44.1 1.0
O1G B:ATP600 4.3 46.2 1.0
O3A B:ATP600 4.4 46.2 1.0
O1A B:ATP600 4.5 46.2 1.0
O2B B:ATP600 4.5 46.2 1.0
PA B:ATP600 4.8 46.2 1.0
O2A B:ATP600 4.9 46.2 1.0

Magnesium binding site 2 out of 4 in 8g0c

Go back to Magnesium Binding Sites List in 8g0c
Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:47.3
occ:1.00
 O3G C:ATP600 1.9 51.6 1.0
O2B C:ATP600 2.0 51.6 1.0
PG C:ATP600 3.2 51.6 1.0
PB C:ATP600 3.2 51.6 1.0
O3B C:ATP600 3.4 51.6 1.0
N C:THR179 4.1 47.6 1.0
O1G C:ATP600 4.1 51.6 1.0
CA C:THR179 4.1 47.6 1.0
O1B C:ATP600 4.1 51.6 1.0
O2G C:ATP600 4.3 51.6 1.0
O3A C:ATP600 4.3 51.6 1.0
O1A C:ATP600 4.6 51.6 1.0
PA C:ATP600 4.9 51.6 1.0

Magnesium binding site 3 out of 4 in 8g0c

Go back to Magnesium Binding Sites List in 8g0c
Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:39.1
occ:1.00
 O2B A:ATP600 1.9 45.3 1.0
O1G A:ATP600 2.2 45.3 1.0
PB A:ATP600 3.2 45.3 1.0
PG A:ATP600 3.4 45.3 1.0
O3B A:ATP600 3.5 45.3 1.0
O1A A:ATP600 4.0 45.3 1.0
O1B A:ATP600 4.1 45.3 1.0
N A:THR179 4.2 43.5 1.0
O3A A:ATP600 4.3 45.3 1.0
CA A:THR179 4.3 43.5 1.0
O3G A:ATP600 4.3 45.3 1.0
O2G A:ATP600 4.5 45.3 1.0
PA A:ATP600 4.8 45.3 1.0

Magnesium binding site 4 out of 4 in 8g0c

Go back to Magnesium Binding Sites List in 8g0c
Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:44.3
occ:1.00
 O2G F:ATP600 1.8 48.9 1.0
O1B F:ATP600 2.3 48.9 1.0
PG F:ATP600 3.2 48.9 1.0
PB F:ATP600 3.3 48.9 1.0
O3B F:ATP600 3.4 48.9 1.0
N F:THR167 3.8 46.9 1.0
CA F:THR167 3.9 46.9 1.0
O3A F:ATP600 4.1 48.9 1.0
O1G F:ATP600 4.1 48.9 1.0
O3G F:ATP600 4.1 48.9 1.0
O1A F:ATP600 4.2 48.9 1.0
PA F:ATP600 4.6 48.9 1.0
O2B F:ATP600 4.6 48.9 1.0
O2A F:ATP600 4.8 48.9 1.0
C F:LYS166 4.9 45.6 1.0

Reference:

G.M.Courbon, J.L.Rubinstein. Structural Basis For Inhibition of Mycobacterial Atp Synthase By Squaramides and Second Generation Diarylquinolines To Be Published.
Page generated: Fri Apr 7 11:21:40 2023

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