Magnesium in PDB 8g2j: Hybrid Aspen Cellulose Synthase-8 Bound to Udp-Glucose

The binding sites of Magnesium atom in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp-Glucose (pdb code 8g2j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp-Glucose, PDB code: 8g2j:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp-Glucose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Hybrid Aspen Cellulose Synthase-8 Bound to Udp-Glucose within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1002 b:77.8 occ:1.00 O1B D:UPG1001 2.5 79.4 1.0 HO2' D:UPG1001 2.6 79.4 1.0 O2B D:UPG1001 2.7 79.4 1.0 PB D:UPG1001 3.0 79.4 1.0 O2' D:UPG1001 3.4 79.4 1.0 O3B D:UPG1001 3.7 79.4 1.0 OD2 D:ASP462 4.1 58.5 1.0 HE21 D:GLN714 4.3 96.3 1.0 H3' D:UPG1001 4.4 79.4 1.0 C2' D:UPG1001 4.5 79.4 1.0 C1' D:UPG1001 4.5 79.4 1.0 O3A D:UPG1001 4.6 79.4 1.0 OD2 D:ASP710 4.6 105.8 1.0 HG3 D:PRO705 4.6 96.0 1.0 H1' D:UPG1001 4.7 79.4 1.0 HH22 D:ARG717 4.9 91.1 1.0 NE2 D:GLN714 5.0 96.3 1.0

Magnesium binding site 2 out of 3 in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp-Glucose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Hybrid Aspen Cellulose Synthase-8 Bound to Udp-Glucose within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1002 b:73.0 occ:1.00 O2B I:UPG1001 2.6 76.7 1.0 HO2' I:UPG1001 3.6 76.7 1.0 PB I:UPG1001 3.9 76.7 1.0 O2' I:UPG1001 4.0 76.7 1.0 O1B I:UPG1001 4.2 76.7 1.0 OE1 I:GLN714 4.3 96.6 1.0 HG3 I:PRO705 4.4 97.3 1.0 OD2 I:ASP462 4.5 58.2 1.0 HD3 I:PRO705 4.6 97.3 1.0 O3A I:UPG1001 4.6 76.7 1.0 O I:SER703 4.8 72.9 1.0

Magnesium binding site 3 out of 3 in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp-Glucose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Hybrid Aspen Cellulose Synthase-8 Bound to Udp-Glucose within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1002 b:64.3 occ:1.00 OD2 C:ASP462 2.9 59.9 1.0 H5C2 C:UPG1001 2.9 76.3 1.0 H5C1 C:UPG1001 3.3 76.3 1.0 C5C C:UPG1001 3.5 76.3 1.0 HB3 C:ASP460 3.6 60.2 1.0 OD2 C:ASP460 3.6 60.2 1.0 H3C C:UPG1001 3.7 76.3 1.0 HB2 C:ASP462 3.8 59.9 1.0 CG C:ASP462 3.9 59.9 1.0 O2B C:UPG1001 4.0 76.3 1.0 H3' C:UPG1001 4.1 76.3 1.0 H4C C:UPG1001 4.2 76.3 1.0 O3B C:UPG1001 4.2 76.3 1.0 HO2' C:UPG1001 4.2 76.3 1.0 C4C C:UPG1001 4.3 76.3 1.0 H C:ASP462 4.3 59.9 1.0 CG C:ASP460 4.3 60.2 1.0 CB C:ASP460 4.3 60.2 1.0 CB C:ASP462 4.4 59.9 1.0 C3C C:UPG1001 4.4 76.3 1.0 HB2 C:ASP460 4.6 60.2 1.0 PB C:UPG1001 4.6 76.3 1.0 O2A C:UPG1001 4.6 76.3 1.0 HD2 C:HIS463 4.7 55.6 1.0 O5C C:UPG1001 4.7 76.3 1.0 OD1 C:ASP462 4.8 59.9 1.0 O3A C:UPG1001 4.8 76.3 1.0 O2' C:UPG1001 5.0 76.3 1.0 SG C:CYS461 5.0 57.3 1.0 PA C:UPG1001 5.0 76.3 1.0

P.Verma, A.L.Kwansa, R.Ho, Y.G.Yingling, J.Zimmer. Insights Into Substrate Coordination and Glycosyl Transfer of Poplar Cellulose Synthase-8. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 36798277
DOI: 10.1101/2023.02.07.527505