Magnesium in PDB 8g7m: Atp-Bound MTHSP60 V72I Focus

Enzymatic activity of Atp-Bound MTHSP60 V72I Focus

All present enzymatic activity of Atp-Bound MTHSP60 V72I Focus:
5.6.1.7;

Other elements in 8g7m:

The structure of Atp-Bound MTHSP60 V72I Focus also contains other interesting chemical elements:

Potassium (K) 7 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Atp-Bound MTHSP60 V72I Focus (pdb code 8g7m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Atp-Bound MTHSP60 V72I Focus, PDB code: 8g7m:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 8g7m

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Magnesium binding site 1 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:43.6
occ:1.00
 O2G A:ATP601 2.1 41.5 1.0
OD1 A:ASP85 2.2 46.6 1.0
O1A A:ATP601 3.0 41.5 1.0
CG A:ASP85 3.0 46.6 1.0
O3B A:ATP601 3.1 41.5 1.0
O1B A:ATP601 3.1 41.5 1.0
OD2 A:ASP85 3.1 46.6 1.0
PG A:ATP601 3.2 41.5 1.0
PB A:ATP601 3.4 41.5 1.0
O3A A:ATP601 3.7 41.5 1.0
PA A:ATP601 3.9 41.5 1.0
O3G A:ATP601 4.1 41.5 1.0
O1G A:ATP601 4.3 41.5 1.0
O A:SER149 4.3 54.5 1.0
N A:GLY86 4.4 44.4 1.0
CB A:ASP85 4.5 46.6 1.0
OD2 A:ASP397 4.5 55.2 1.0
CB A:ASP397 4.6 55.2 1.0
CG A:ASP397 4.7 55.2 1.0
O5' A:ATP601 4.9 41.5 1.0
CA A:ASP85 4.9 46.6 1.0
O2B A:ATP601 4.9 41.5 1.0

Magnesium binding site 2 out of 7 in 8g7m

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Magnesium binding site 2 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:38.1
occ:1.00
 O2G B:ATP601 2.4 40.8 1.0
OD1 B:ASP85 2.7 45.0 1.0
O1A B:ATP601 2.7 40.8 1.0
O1B B:ATP601 2.9 40.8 1.0
O3B B:ATP601 3.2 40.8 1.0
PB B:ATP601 3.3 40.8 1.0
O3A B:ATP601 3.4 40.8 1.0
PG B:ATP601 3.4 40.8 1.0
CG B:ASP85 3.5 45.0 1.0
OD2 B:ASP85 3.5 45.0 1.0
PA B:ATP601 3.6 40.8 1.0
O B:SER149 4.2 52.3 1.0
O1G B:ATP601 4.4 40.8 1.0
O5' B:ATP601 4.5 40.8 1.0
O3G B:ATP601 4.5 40.8 1.0
OD2 B:ASP397 4.5 53.2 1.0
C5' B:ATP601 4.7 40.8 1.0
N B:GLY86 4.8 42.5 1.0
CB B:ASP397 4.8 53.2 1.0
CG B:ASP397 4.9 53.2 1.0
O2A B:ATP601 4.9 40.8 1.0
O2B B:ATP601 4.9 40.8 1.0
CB B:ASP85 4.9 45.0 1.0
CA B:SER149 5.0 52.3 1.0

Magnesium binding site 3 out of 7 in 8g7m

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Magnesium binding site 3 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:35.6
occ:1.00
 OD1 C:ASP85 2.6 44.3 1.0
O2G C:ATP601 2.8 42.5 1.0
O1B C:ATP601 2.9 42.5 1.0
O1A C:ATP601 2.9 42.5 1.0
OD2 C:ASP85 3.1 44.3 1.0
CG C:ASP85 3.2 44.3 1.0
O3B C:ATP601 3.5 42.5 1.0
PB C:ATP601 3.5 42.5 1.0
O3A C:ATP601 3.6 42.5 1.0
PA C:ATP601 3.8 42.5 1.0
PG C:ATP601 3.8 42.5 1.0
O C:SER149 4.2 53.7 1.0
O5' C:ATP601 4.6 42.5 1.0
CB C:ASP85 4.7 44.3 1.0
N C:GLY86 4.7 43.4 1.0
O3G C:ATP601 4.8 42.5 1.0
C5' C:ATP601 4.8 42.5 1.0
OD2 C:ASP397 4.8 54.0 1.0
CA C:SER149 4.8 53.7 1.0
CB C:ASP397 4.9 54.0 1.0
O1G C:ATP601 4.9 42.5 1.0
C C:SER149 4.9 53.7 1.0
CG C:ASP397 5.0 54.0 1.0

Magnesium binding site 4 out of 7 in 8g7m

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Magnesium binding site 4 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:44.0
occ:1.00
 OD1 D:ASP85 2.1 49.1 1.0
OD2 D:ASP85 2.6 49.1 1.0
CG D:ASP85 2.7 49.1 1.0
O2G D:ATP601 2.7 55.7 1.0
O1B D:ATP601 3.0 55.7 1.0
O3B D:ATP601 3.3 55.7 1.0
O1A D:ATP601 3.5 55.7 1.0
PB D:ATP601 3.5 55.7 1.0
PG D:ATP601 3.6 55.7 1.0
O3A D:ATP601 3.8 55.7 1.0
CB D:ASP85 4.1 49.1 1.0
PA D:ATP601 4.2 55.7 1.0
O D:SER149 4.3 52.2 1.0
N D:GLY86 4.3 48.2 1.0
O3G D:ATP601 4.5 55.7 1.0
CB D:ASP397 4.7 53.3 1.0
O5' D:ATP601 4.7 55.7 1.0
O1G D:ATP601 4.7 55.7 1.0
OD2 D:ASP397 4.7 53.3 1.0
CA D:ASP85 4.8 49.1 1.0
CA D:SER149 4.8 52.2 1.0
CG D:ASP397 4.9 53.3 1.0
CB D:SER149 5.0 52.2 1.0

Magnesium binding site 5 out of 7 in 8g7m

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Magnesium binding site 5 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:38.0
occ:1.00
 O2G E:ATP601 2.1 43.6 1.0
O1A E:ATP601 2.1 43.6 1.0
OD1 E:ASP85 2.8 45.1 1.0
O1B E:ATP601 3.0 43.6 1.0
O3B E:ATP601 3.1 43.6 1.0
PG E:ATP601 3.2 43.6 1.0
PA E:ATP601 3.2 43.6 1.0
O3A E:ATP601 3.3 43.6 1.0
PB E:ATP601 3.3 43.6 1.0
CG E:ASP85 3.6 45.1 1.0
OD2 E:ASP85 3.6 45.1 1.0
O3G E:ATP601 4.1 43.6 1.0
O5' E:ATP601 4.3 43.6 1.0
O1G E:ATP601 4.3 43.6 1.0
O2A E:ATP601 4.3 43.6 1.0
O E:SER149 4.4 52.0 1.0
C5' E:ATP601 4.6 43.6 1.0
N E:GLY86 4.7 41.9 1.0
O2B E:ATP601 4.8 43.6 1.0
OD2 E:ASP397 5.0 57.1 1.0

Magnesium binding site 6 out of 7 in 8g7m

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Magnesium binding site 6 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg602

b:41.9
occ:1.00
 OD1 F:ASP85 2.1 48.4 1.0
OD2 F:ASP85 2.5 48.4 1.0
CG F:ASP85 2.6 48.4 1.0
O1B F:ATP601 2.9 45.3 1.0
O2G F:ATP601 3.1 45.3 1.0
O1A F:ATP601 3.2 45.3 1.0
O3B F:ATP601 3.5 45.3 1.0
PB F:ATP601 3.6 45.3 1.0
O3A F:ATP601 3.9 45.3 1.0
PG F:ATP601 4.0 45.3 1.0
CB F:ASP85 4.1 48.4 1.0
PA F:ATP601 4.1 45.3 1.0
O F:SER149 4.3 53.9 1.0
N F:GLY86 4.4 44.5 1.0
CA F:SER149 4.7 53.9 1.0
O3G F:ATP601 4.7 45.3 1.0
CB F:SER149 4.8 53.9 1.0
CA F:ASP85 4.8 48.4 1.0
O5' F:ATP601 4.9 45.3 1.0
CB F:ASP397 4.9 55.2 1.0
C F:SER149 5.0 53.9 1.0

Magnesium binding site 7 out of 7 in 8g7m

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Magnesium binding site 7 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg602

b:39.7
occ:1.00
 OD1 G:ASP85 2.2 46.8 1.0
O2G G:ATP601 2.3 44.3 1.0
O1B G:ATP601 2.6 44.3 1.0
O1A G:ATP601 2.9 44.3 1.0
O3B G:ATP601 3.0 44.3 1.0
CG G:ASP85 3.0 46.8 1.0
PB G:ATP601 3.1 44.3 1.0
OD2 G:ASP85 3.2 46.8 1.0
PG G:ATP601 3.3 44.3 1.0
O3A G:ATP601 3.3 44.3 1.0
PA G:ATP601 3.7 44.3 1.0
O3G G:ATP601 4.2 44.3 1.0
N G:GLY86 4.3 43.3 1.0
O1G G:ATP601 4.4 44.3 1.0
CB G:ASP85 4.5 46.8 1.0
O G:SER149 4.5 54.3 1.0
O5' G:ATP601 4.5 44.3 1.0
O2B G:ATP601 4.6 44.3 1.0
C5' G:ATP601 4.8 44.3 1.0
OD2 G:ASP397 4.8 58.4 1.0
CB G:ASP397 4.9 58.4 1.0
CA G:ASP85 4.9 46.8 1.0
O2A G:ATP601 4.9 44.3 1.0

Reference:

J.R.Braxton, H.Shao, E.Tse, J.E.Gestwicki, D.R.Southworth. Asymmetric Apical Domain States of Mitochondrial HSP60 Coordinate Substrate Engagement and Chaperonin Assembly. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 37293102
DOI: 10.1101/2023.05.15.540872
Page generated: Fri Jul 28 00:13:55 2023

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