Atomistry » Magnesium » PDB 8g2w-8gd7 » 8g7m
Atomistry »
  Magnesium »
    PDB 8g2w-8gd7 »
      8g7m »

Magnesium in PDB 8g7m: Atp-Bound MTHSP60 V72I Focus

Enzymatic activity of Atp-Bound MTHSP60 V72I Focus

All present enzymatic activity of Atp-Bound MTHSP60 V72I Focus:
5.6.1.7;

Other elements in 8g7m:

The structure of Atp-Bound MTHSP60 V72I Focus also contains other interesting chemical elements:

Potassium (K) 7 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Atp-Bound MTHSP60 V72I Focus (pdb code 8g7m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Atp-Bound MTHSP60 V72I Focus, PDB code: 8g7m:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 8g7m

Go back to Magnesium Binding Sites List in 8g7m
Magnesium binding site 1 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:43.6
occ:1.00
 O2G A:ATP601 2.1 41.5 1.0
OD1 A:ASP85 2.2 46.6 1.0
O1A A:ATP601 3.0 41.5 1.0
CG A:ASP85 3.0 46.6 1.0
O3B A:ATP601 3.1 41.5 1.0
O1B A:ATP601 3.1 41.5 1.0
OD2 A:ASP85 3.1 46.6 1.0
PG A:ATP601 3.2 41.5 1.0
PB A:ATP601 3.4 41.5 1.0
O3A A:ATP601 3.7 41.5 1.0
PA A:ATP601 3.9 41.5 1.0
O3G A:ATP601 4.1 41.5 1.0
O1G A:ATP601 4.3 41.5 1.0
O A:SER149 4.3 54.5 1.0
N A:GLY86 4.4 44.4 1.0
CB A:ASP85 4.5 46.6 1.0
OD2 A:ASP397 4.5 55.2 1.0
CB A:ASP397 4.6 55.2 1.0
CG A:ASP397 4.7 55.2 1.0
O5' A:ATP601 4.9 41.5 1.0
CA A:ASP85 4.9 46.6 1.0
O2B A:ATP601 4.9 41.5 1.0

Magnesium binding site 2 out of 7 in 8g7m

Go back to Magnesium Binding Sites List in 8g7m
Magnesium binding site 2 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:38.1
occ:1.00
 O2G B:ATP601 2.4 40.8 1.0
OD1 B:ASP85 2.7 45.0 1.0
O1A B:ATP601 2.7 40.8 1.0
O1B B:ATP601 2.9 40.8 1.0
O3B B:ATP601 3.2 40.8 1.0
PB B:ATP601 3.3 40.8 1.0
O3A B:ATP601 3.4 40.8 1.0
PG B:ATP601 3.4 40.8 1.0
CG B:ASP85 3.5 45.0 1.0
OD2 B:ASP85 3.5 45.0 1.0
PA B:ATP601 3.6 40.8 1.0
O B:SER149 4.2 52.3 1.0
O1G B:ATP601 4.4 40.8 1.0
O5' B:ATP601 4.5 40.8 1.0
O3G B:ATP601 4.5 40.8 1.0
OD2 B:ASP397 4.5 53.2 1.0
C5' B:ATP601 4.7 40.8 1.0
N B:GLY86 4.8 42.5 1.0
CB B:ASP397 4.8 53.2 1.0
CG B:ASP397 4.9 53.2 1.0
O2A B:ATP601 4.9 40.8 1.0
O2B B:ATP601 4.9 40.8 1.0
CB B:ASP85 4.9 45.0 1.0
CA B:SER149 5.0 52.3 1.0

Magnesium binding site 3 out of 7 in 8g7m

Go back to Magnesium Binding Sites List in 8g7m
Magnesium binding site 3 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:35.6
occ:1.00
 OD1 C:ASP85 2.6 44.3 1.0
O2G C:ATP601 2.8 42.5 1.0
O1B C:ATP601 2.9 42.5 1.0
O1A C:ATP601 2.9 42.5 1.0
OD2 C:ASP85 3.1 44.3 1.0
CG C:ASP85 3.2 44.3 1.0
O3B C:ATP601 3.5 42.5 1.0
PB C:ATP601 3.5 42.5 1.0
O3A C:ATP601 3.6 42.5 1.0
PA C:ATP601 3.8 42.5 1.0
PG C:ATP601 3.8 42.5 1.0
O C:SER149 4.2 53.7 1.0
O5' C:ATP601 4.6 42.5 1.0
CB C:ASP85 4.7 44.3 1.0
N C:GLY86 4.7 43.4 1.0
O3G C:ATP601 4.8 42.5 1.0
C5' C:ATP601 4.8 42.5 1.0
OD2 C:ASP397 4.8 54.0 1.0
CA C:SER149 4.8 53.7 1.0
CB C:ASP397 4.9 54.0 1.0
O1G C:ATP601 4.9 42.5 1.0
C C:SER149 4.9 53.7 1.0
CG C:ASP397 5.0 54.0 1.0

Magnesium binding site 4 out of 7 in 8g7m

Go back to Magnesium Binding Sites List in 8g7m
Magnesium binding site 4 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:44.0
occ:1.00
 OD1 D:ASP85 2.1 49.1 1.0
OD2 D:ASP85 2.6 49.1 1.0
CG D:ASP85 2.7 49.1 1.0
O2G D:ATP601 2.7 55.7 1.0
O1B D:ATP601 3.0 55.7 1.0
O3B D:ATP601 3.3 55.7 1.0
O1A D:ATP601 3.5 55.7 1.0
PB D:ATP601 3.5 55.7 1.0
PG D:ATP601 3.6 55.7 1.0
O3A D:ATP601 3.8 55.7 1.0
CB D:ASP85 4.1 49.1 1.0
PA D:ATP601 4.2 55.7 1.0
O D:SER149 4.3 52.2 1.0
N D:GLY86 4.3 48.2 1.0
O3G D:ATP601 4.5 55.7 1.0
CB D:ASP397 4.7 53.3 1.0
O5' D:ATP601 4.7 55.7 1.0
O1G D:ATP601 4.7 55.7 1.0
OD2 D:ASP397 4.7 53.3 1.0
CA D:ASP85 4.8 49.1 1.0
CA D:SER149 4.8 52.2 1.0
CG D:ASP397 4.9 53.3 1.0
CB D:SER149 5.0 52.2 1.0

Magnesium binding site 5 out of 7 in 8g7m

Go back to Magnesium Binding Sites List in 8g7m
Magnesium binding site 5 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:38.0
occ:1.00
 O2G E:ATP601 2.1 43.6 1.0
O1A E:ATP601 2.1 43.6 1.0
OD1 E:ASP85 2.8 45.1 1.0
O1B E:ATP601 3.0 43.6 1.0
O3B E:ATP601 3.1 43.6 1.0
PG E:ATP601 3.2 43.6 1.0
PA E:ATP601 3.2 43.6 1.0
O3A E:ATP601 3.3 43.6 1.0
PB E:ATP601 3.3 43.6 1.0
CG E:ASP85 3.6 45.1 1.0
OD2 E:ASP85 3.6 45.1 1.0
O3G E:ATP601 4.1 43.6 1.0
O5' E:ATP601 4.3 43.6 1.0
O1G E:ATP601 4.3 43.6 1.0
O2A E:ATP601 4.3 43.6 1.0
O E:SER149 4.4 52.0 1.0
C5' E:ATP601 4.6 43.6 1.0
N E:GLY86 4.7 41.9 1.0
O2B E:ATP601 4.8 43.6 1.0
OD2 E:ASP397 5.0 57.1 1.0

Magnesium binding site 6 out of 7 in 8g7m

Go back to Magnesium Binding Sites List in 8g7m
Magnesium binding site 6 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg602

b:41.9
occ:1.00
 OD1 F:ASP85 2.1 48.4 1.0
OD2 F:ASP85 2.5 48.4 1.0
CG F:ASP85 2.6 48.4 1.0
O1B F:ATP601 2.9 45.3 1.0
O2G F:ATP601 3.1 45.3 1.0
O1A F:ATP601 3.2 45.3 1.0
O3B F:ATP601 3.5 45.3 1.0
PB F:ATP601 3.6 45.3 1.0
O3A F:ATP601 3.9 45.3 1.0
PG F:ATP601 4.0 45.3 1.0
CB F:ASP85 4.1 48.4 1.0
PA F:ATP601 4.1 45.3 1.0
O F:SER149 4.3 53.9 1.0
N F:GLY86 4.4 44.5 1.0
CA F:SER149 4.7 53.9 1.0
O3G F:ATP601 4.7 45.3 1.0
CB F:SER149 4.8 53.9 1.0
CA F:ASP85 4.8 48.4 1.0
O5' F:ATP601 4.9 45.3 1.0
CB F:ASP397 4.9 55.2 1.0
C F:SER149 5.0 53.9 1.0

Magnesium binding site 7 out of 7 in 8g7m

Go back to Magnesium Binding Sites List in 8g7m
Magnesium binding site 7 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg602

b:39.7
occ:1.00
 OD1 G:ASP85 2.2 46.8 1.0
O2G G:ATP601 2.3 44.3 1.0
O1B G:ATP601 2.6 44.3 1.0
O1A G:ATP601 2.9 44.3 1.0
O3B G:ATP601 3.0 44.3 1.0
CG G:ASP85 3.0 46.8 1.0
PB G:ATP601 3.1 44.3 1.0
OD2 G:ASP85 3.2 46.8 1.0
PG G:ATP601 3.3 44.3 1.0
O3A G:ATP601 3.3 44.3 1.0
PA G:ATP601 3.7 44.3 1.0
O3G G:ATP601 4.2 44.3 1.0
N G:GLY86 4.3 43.3 1.0
O1G G:ATP601 4.4 44.3 1.0
CB G:ASP85 4.5 46.8 1.0
O G:SER149 4.5 54.3 1.0
O5' G:ATP601 4.5 44.3 1.0
O2B G:ATP601 4.6 44.3 1.0
C5' G:ATP601 4.8 44.3 1.0
OD2 G:ASP397 4.8 58.4 1.0
CB G:ASP397 4.9 58.4 1.0
CA G:ASP85 4.9 46.8 1.0
O2A G:ATP601 4.9 44.3 1.0

Reference:

J.R.Braxton, H.Shao, E.Tse, J.E.Gestwicki, D.R.Southworth. Asymmetric Apical Domain States of Mitochondrial HSP60 Coordinate Substrate Engagement and Chaperonin Assembly. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 37293102
DOI: 10.1101/2023.05.15.540872
Page generated: Fri Oct 4 03:02:22 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy