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Magnesium in PDB 8g8z: Cryo-Em Structure of 3DVA Component 1 of Escherichia Coli Que-Pec (Paused Elongation Complex) Rna Polymerase Plus PREQ1 Ligand

Enzymatic activity of Cryo-Em Structure of 3DVA Component 1 of Escherichia Coli Que-Pec (Paused Elongation Complex) Rna Polymerase Plus PREQ1 Ligand

All present enzymatic activity of Cryo-Em Structure of 3DVA Component 1 of Escherichia Coli Que-Pec (Paused Elongation Complex) Rna Polymerase Plus PREQ1 Ligand:
2.7.7.6;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of 3DVA Component 1 of Escherichia Coli Que-Pec (Paused Elongation Complex) Rna Polymerase Plus PREQ1 Ligand (pdb code 8g8z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of 3DVA Component 1 of Escherichia Coli Que-Pec (Paused Elongation Complex) Rna Polymerase Plus PREQ1 Ligand, PDB code: 8g8z:

Magnesium binding site 1 out of 1 in 8g8z

Go back to Magnesium Binding Sites List in 8g8z
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of 3DVA Component 1 of Escherichia Coli Que-Pec (Paused Elongation Complex) Rna Polymerase Plus PREQ1 Ligand


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of 3DVA Component 1 of Escherichia Coli Que-Pec (Paused Elongation Complex) Rna Polymerase Plus PREQ1 Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1401

b:55.4
occ:1.00
 OD2 J:ASP460 2.4 50.1 1.0
OD1 J:ASP464 2.6 49.1 1.0
OD1 J:ASP462 2.6 50.9 1.0
OD2 J:ASP462 2.7 50.9 1.0
OD2 J:ASP464 2.8 49.1 1.0
CG J:ASP462 2.8 50.9 1.0
O3' R:A47 2.9 102.6 1.0
CG J:ASP464 2.9 49.1 1.0
CB J:ASP460 3.1 50.1 1.0
CG J:ASP460 3.2 50.1 1.0
OP1 R:G48 3.4 119.4 1.0
C4' R:A47 3.7 102.6 1.0
P R:G48 3.8 119.4 1.0
C3' R:A47 3.8 102.6 1.0
O2' R:A47 4.0 102.6 1.0
CB J:ASP462 4.1 50.9 1.0
O J:ASP462 4.1 50.9 1.0
N J:ASP462 4.1 50.9 1.0
CA J:ASP460 4.2 50.1 1.0
C5' R:A47 4.3 102.6 1.0
CB J:ASP464 4.3 49.1 1.0
CA J:ASP462 4.4 50.9 1.0
OD1 J:ASP460 4.4 50.1 1.0
C J:ASP462 4.4 50.9 1.0
N J:ASP460 4.4 50.1 1.0
C5' R:G48 4.4 119.4 1.0
C2' R:A47 4.5 102.6 1.0
C J:ASP460 4.6 50.1 1.0
O5' R:G48 4.7 119.4 1.0
N J:ASP464 4.7 49.1 1.0
N J:PHE461 4.8 47.0 1.0
CA J:ASP464 4.8 49.1 1.0
OP2 R:G48 5.0 119.4 1.0
O4' R:A47 5.0 102.6 1.0

Reference:

A.Chauvier, J.C.Porta, I.Deb, E.Ellinger, K.Meze, A.T.Frank, M.D.Ohi, N.G.Walter. Structural Basis For Control of Bacterial Rna Polymerase Pausing By A Riboswitch and Its Ligand. Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
PubMed: 37264140
DOI: 10.1038/S41594-023-01002-X
Page generated: Fri Oct 4 03:02:31 2024

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