Magnesium in PDB 8gbt: Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase

All present enzymatic activity of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase:
1.9.3.1;

The structure of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase, PDB code: 8gbt was solved by I.Ishigami, S.-R.Yeh, D.L.Rousseau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.00 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	178.3, 189, 209, 90, 90, 90
R / Rfree (%)	22.3 / 26.9

The structure of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase also contains other interesting chemical elements:

Copper	(Cu)	6 atoms
Iron	(Fe)	4 atoms
Zinc	(Zn)	2 atoms
Sodium	(Na)	2 atoms

The binding sites of Magnesium atom in the Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase (pdb code 8gbt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase, PDB code: 8gbt:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg604 b:47.8 occ:1.00 NE2 A:HIS368 2.0 38.4 1.0 OD1 A:ASP369 2.1 55.4 1.0 OE1 B:GLU198 2.2 37.6 1.0 OD2 A:ASP369 2.3 45.2 1.0 CG A:ASP369 2.4 42.4 1.0 OE2 B:GLU198 2.7 36.4 1.0 CE1 A:HIS368 2.7 35.4 1.0 CD B:GLU198 2.7 35.6 1.0 CD2 A:HIS368 3.1 34.7 1.0 O B:HOH408 3.2 48.4 1.0 CB A:ASP369 3.6 36.1 1.0 ND1 A:HIS368 3.8 31.9 1.0 O B:SER197 3.9 40.5 1.0 CG A:HIS368 4.0 32.8 1.0 CG B:GLU198 4.1 34.4 1.0 O A:HOH732 4.6 19.7 1.0 CA A:ASP369 4.6 35.0 1.0 N A:ASP369 4.7 34.4 1.0 CB B:GLU198 4.7 37.3 1.0 OD2 B:ASP173 4.8 57.7 1.0 O A:HOH704 4.9 41.7 1.0 CA B:GLU198 4.9 36.1 1.0 O A:HOH718 4.9 26.4 1.0 C B:SER197 4.9 37.3 1.0 OD1 B:ASP173 5.0 51.7 1.0

Magnesium binding site 2 out of 2 in the Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase within 5.0Å range: probe atom residue distance (Å) B Occ N:Mg604 b:39.6 occ:1.00 NE2 N:HIS368 2.0 42.8 1.0 OE1 O:GLU198 2.2 41.3 1.0 OD2 N:ASP369 2.2 46.1 1.0 O O:HOH401 2.6 24.4 1.0 CD2 N:HIS368 2.8 42.5 1.0 CE1 N:HIS368 3.1 41.5 1.0 CG N:ASP369 3.2 50.4 1.0 O O:SER197 3.3 63.3 1.0 OD1 O:ASP173 3.4 47.7 1.0 CD O:GLU198 3.4 44.5 1.0 OD2 O:ASP173 3.6 50.9 1.0 CB N:ASP369 3.9 47.3 1.0 CG O:ASP173 3.9 51.2 1.0 CG N:HIS368 4.0 40.9 1.0 ND1 N:HIS368 4.1 37.3 1.0 OD1 N:ASP369 4.2 53.8 1.0 OG1 N:THR294 4.2 46.4 1.0 CB O:GLU198 4.2 50.6 1.0 CG O:GLU198 4.3 47.5 1.0 OE2 O:GLU198 4.3 37.1 1.0 C O:SER197 4.5 60.0 1.0 CA O:GLU198 4.6 51.7 1.0 O N:HOH716 4.6 48.5 1.0 N O:GLU198 5.0 55.9 1.0 CB O:SER162 5.0 65.5 1.0

I.Ishigami, S.-R.Yeh, D.L.Rousseau. Detection of A Geminate Photoproduct of Bovine Cytochrome C Oxidase By Time-Resolved Serial Femtosecond Crystallography To Be Published.