Magnesium in PDB 8glu: Cryoem Structure of Tnsc(1-503) Bound to Tnsd(1-318) From E.Coli TN7

The structure of Cryoem Structure of Tnsc(1-503) Bound to Tnsd(1-318) From E.Coli TN7 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Cryoem Structure of Tnsc(1-503) Bound to Tnsd(1-318) From E.Coli TN7 (pdb code 8glu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryoem Structure of Tnsc(1-503) Bound to Tnsd(1-318) From E.Coli TN7, PDB code: 8glu:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryoem Structure of Tnsc(1-503) Bound to Tnsd(1-318) From E.Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Tnsc(1-503) Bound to Tnsd(1-318) From E.Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg602 b:23.6 occ:1.00 O3G G:ATP601 2.1 31.4 1.0 OG1 G:THR143 2.8 43.5 1.0 O2B G:ATP601 3.3 31.4 1.0 PG G:ATP601 3.5 31.4 1.0 O3B G:ATP601 3.8 31.4 1.0 CB G:THR143 3.8 43.5 1.0 NH2 F:ARG284 3.9 37.9 1.0 PB G:ATP601 4.2 31.4 1.0 OD1 G:ASP232 4.3 37.5 1.0 O2G G:ATP601 4.4 31.4 1.0 O1A G:ATP601 4.5 31.4 1.0 OD2 G:ASP232 4.5 37.5 1.0 O1G G:ATP601 4.5 31.4 1.0 CG2 G:THR143 4.6 43.5 1.0 CG G:GLU233 4.7 41.4 1.0 CG G:ASP232 4.7 37.5 1.0 ND2 F:ASN257 4.8 55.4 1.0 O3A G:ATP601 4.8 31.4 1.0 CD G:GLU233 4.9 41.4 1.0 N G:THR143 4.9 43.5 1.0 CZ F:ARG284 4.9 37.9 1.0 CA G:THR143 5.0 43.5 1.0

Magnesium binding site 2 out of 3 in the Cryoem Structure of Tnsc(1-503) Bound to Tnsd(1-318) From E.Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Tnsc(1-503) Bound to Tnsd(1-318) From E.Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg602 b:50.6 occ:1.00 O3B F:ATP601 2.1 44.1 1.0 O3G F:ATP601 2.1 44.1 1.0 PG F:ATP601 2.4 44.1 1.0 O2B F:ATP601 2.7 44.1 1.0 O2G F:ATP601 2.7 44.1 1.0 OG1 F:THR143 2.8 34.2 1.0 PB F:ATP601 2.9 44.1 1.0 O3A F:ATP601 3.5 44.1 1.0 CB F:THR143 3.6 34.2 1.0 O1A F:ATP601 3.7 44.1 1.0 O1G F:ATP601 3.8 44.1 1.0 PA F:ATP601 4.2 44.1 1.0 O1B F:ATP601 4.2 44.1 1.0 N F:THR143 4.3 34.2 1.0 CA F:THR143 4.6 34.2 1.0 CG2 F:THR143 4.6 34.2 1.0 NH2 E:ARG283 4.8 87.3 1.0 O2A F:ATP601 4.9 44.1 1.0

Magnesium binding site 3 out of 3 in the Cryoem Structure of Tnsc(1-503) Bound to Tnsd(1-318) From E.Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of Tnsc(1-503) Bound to Tnsd(1-318) From E.Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:101.5 occ:1.00 O1B E:ADP601 2.1 118.5 1.0 OG1 E:THR143 2.1 105.8 1.0 O1A E:ADP601 2.1 118.5 1.0 O3B E:ADP601 2.6 118.5 1.0 PB E:ADP601 2.7 118.5 1.0 OD2 E:ASP232 2.7 119.0 1.0 PA E:ADP601 3.1 118.5 1.0 CB E:THR143 3.2 105.8 1.0 O3A E:ADP601 3.3 118.5 1.0 O2A E:ADP601 3.7 118.5 1.0 CG2 E:THR143 3.7 105.8 1.0 CG E:ASP232 3.9 119.0 1.0 O2B E:ADP601 4.1 118.5 1.0 OD1 E:ASP232 4.3 119.0 1.0 CA E:THR143 4.5 105.8 1.0 O5' E:ADP601 4.5 118.5 1.0 OE1 E:GLU233 4.5 128.3 1.0 N E:THR143 4.6 105.8 1.0 CB E:GLU233 4.7 128.3 1.0

Y.Shen, S.S.Krishnan, M.T.Petassi, M.A.Hancock, J.E.Peters, A.Guarne. Assembly of the TN7 Targeting Complex By A Regulated Stepwise Process. Mol.Cell V. 84 2368 2024.
ISSN: ISSN 1097-2765
PubMed: 38834067
DOI: 10.1016/J.MOLCEL.2024.05.012