Magnesium in PDB 8glw: Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7

The structure of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 (pdb code 8glw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7, PDB code: 8glw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:42.9 occ:1.00 OG1 A:THR143 2.1 53.9 1.0 O2B A:ADP601 2.7 49.6 1.0 O3B A:ADP601 2.8 49.6 1.0 CB A:THR143 3.0 53.9 1.0 PB A:ADP601 3.2 49.6 1.0 OE2 A:GLU233 3.8 51.7 1.0 CG2 A:THR143 3.8 53.9 1.0 O2A A:ADP601 3.9 49.6 1.0 CG A:GLU233 4.2 51.7 1.0 CA A:THR143 4.3 53.9 1.0 O3A A:ADP601 4.3 49.6 1.0 N A:THR143 4.3 53.9 1.0 CD A:GLU233 4.4 51.7 1.0 O1B A:ADP601 4.4 49.6 1.0 PA A:ADP601 4.4 49.6 1.0 OD2 A:ASP232 4.5 49.6 1.0 O1A A:ADP601 4.5 49.6 1.0 OD1 A:ASP232 4.6 49.6 1.0 CG A:ASP232 5.0 49.6 1.0

Magnesium binding site 2 out of 7 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:12.4 occ:1.00 O3B B:ADP601 2.0 19.3 1.0 OG1 B:THR143 2.6 16.9 1.0 OE2 B:GLU233 2.9 26.6 1.0 PB B:ADP601 3.4 19.3 1.0 CB B:THR143 3.6 16.9 1.0 CD B:GLU233 3.6 26.6 1.0 OE1 B:GLU233 3.9 26.6 1.0 OD2 B:ASP232 4.0 31.8 1.0 O2B B:ADP601 4.0 19.3 1.0 O1B B:ADP601 4.2 19.3 1.0 CG2 B:THR143 4.3 16.9 1.0 O3A B:ADP601 4.5 19.3 1.0 O2A B:ADP601 4.5 19.3 1.0 O1A B:ADP601 4.8 19.3 1.0 PA B:ADP601 4.8 19.3 1.0 CG B:ASP232 4.8 31.8 1.0 CG B:GLU233 4.8 26.6 1.0 N B:THR143 4.8 16.9 1.0 CA B:THR143 4.9 16.9 1.0 OD1 B:ASP232 4.9 31.8 1.0

Magnesium binding site 3 out of 7 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:22.1 occ:1.00 OG1 C:THR143 2.0 24.4 1.0 O2G C:ATP601 2.1 28.5 1.0 OD2 C:ASP232 2.1 24.0 1.0 OD1 C:ASP232 2.7 24.0 1.0 CG C:ASP232 2.7 24.0 1.0 CB C:THR143 3.4 24.4 1.0 PG C:ATP601 3.5 28.5 1.0 CG2 C:THR143 3.8 24.4 1.0 O3G C:ATP601 4.0 28.5 1.0 CB C:ASP232 4.2 24.0 1.0 CA C:THR143 4.3 24.4 1.0 O3B C:ATP601 4.4 28.5 1.0 O1G C:ATP601 4.4 28.5 1.0 CG C:GLU233 4.7 28.2 1.0 N C:THR143 4.7 24.4 1.0 NZ C:LYS171 4.9 19.9 1.0

Magnesium binding site 4 out of 7 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:30.3 occ:1.00 OE2 D:GLU233 2.1 33.4 1.0 O1B D:ADP601 2.3 43.4 1.0 OG1 D:THR143 2.5 32.3 1.0 CD D:GLU233 3.0 33.4 1.0 CG D:GLU233 3.3 33.4 1.0 CB D:THR143 3.4 32.3 1.0 PB D:ADP601 3.7 43.4 1.0 CG2 D:THR143 4.0 32.3 1.0 OE1 D:GLU233 4.1 33.4 1.0 O2B D:ADP601 4.3 43.4 1.0 O2A D:ADP601 4.5 43.4 1.0 O3B D:ADP601 4.5 43.4 1.0 O3A D:ADP601 4.7 43.4 1.0 CA D:THR143 4.7 32.3 1.0 O1A D:ADP601 4.7 43.4 1.0 CB D:GLU233 4.8 33.4 1.0 PA D:ADP601 4.8 43.4 1.0 N D:THR143 4.9 32.3 1.0

Magnesium binding site 5 out of 7 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:14.9 occ:1.00 O1B E:ADP601 2.0 19.9 1.0 OE2 E:GLU233 2.7 27.8 1.0 PB E:ADP601 3.2 19.9 1.0 OG1 E:THR143 3.3 19.9 1.0 CD E:GLU233 3.7 27.8 1.0 O2B E:ADP601 3.7 19.9 1.0 CG E:GLU233 3.8 27.8 1.0 O3B E:ADP601 3.9 19.9 1.0 OD2 E:ASP232 4.2 33.4 1.0 CB E:THR143 4.4 19.9 1.0 O3A E:ADP601 4.5 19.9 1.0 NZ E:LYS142 4.5 19.9 1.0 O1A E:ADP601 4.7 19.9 1.0 OE1 E:GLU233 4.8 27.8 1.0 OD1 E:ASP232 4.9 33.4 1.0 CG E:ASP232 5.0 33.4 1.0 PA E:ADP601 5.0 19.9 1.0 CE E:LYS142 5.0 19.9 1.0

Magnesium binding site 6 out of 7 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg603 b:16.0 occ:1.00 O1B F:ADP601 2.0 19.9 1.0 OG1 F:THR143 2.4 19.9 1.0 NH2 E:ARG284 3.2 30.5 0.0 PB F:ADP601 3.5 19.9 1.0 CB F:THR143 3.5 19.9 1.0 O2B F:ADP601 4.0 19.9 1.0 O3A F:ADP601 4.3 19.9 1.0 OD1 F:ASP232 4.3 19.9 1.0 CG2 F:THR143 4.4 19.9 1.0 CZ E:ARG284 4.4 30.5 0.0 O3B F:ADP601 4.4 19.9 1.0 N F:THR143 4.5 19.9 1.0 O2A F:ADP601 4.5 19.9 1.0 CA F:THR143 4.6 19.9 1.0 PA F:ADP601 4.7 19.9 1.0 O1A F:ADP601 4.7 19.9 1.0 OE2 F:GLU233 4.8 5.8 1.0 NE E:ARG284 4.9 30.5 0.0 OD2 F:ASP232 4.9 19.9 1.0

Magnesium binding site 7 out of 7 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg602 b:19.9 occ:1.00 O2B G:ATP601 2.1 12.9 1.0 OG1 G:THR143 2.3 6.2 1.0 O3G G:ATP601 2.9 12.9 1.0 CB G:THR143 3.4 6.2 1.0 PB G:ATP601 3.5 12.9 1.0 O3B G:ATP601 3.9 12.9 1.0 PG G:ATP601 4.0 12.9 1.0 CG2 G:THR143 4.1 6.2 1.0 OD1 G:ASP232 4.1 22.7 1.0 OD2 G:ASP232 4.1 22.7 1.0 NH2 F:ARG284 4.1 19.9 1.0 O1B G:ATP601 4.3 12.9 1.0 CG G:ASP232 4.5 22.7 1.0 O3A G:ATP601 4.5 12.9 1.0 CA G:THR143 4.6 6.2 1.0 N G:THR143 4.6 6.2 1.0 O1G G:ATP601 4.6 12.9 1.0 O1A G:ATP601 4.7 12.9 1.0

Y.Shen, S.S.Krishnan, M.T.Petassi, M.A.Hancock, J.E.Peters, A.Guarne. Assembly of the TN7 Targeting Complex By A Regulated Stepwise Process. Mol.Cell V. 84 2368 2024.
ISSN: ISSN 1097-2765
PubMed: 38834067
DOI: 10.1016/J.MOLCEL.2024.05.012