Magnesium in PDB 8glx: Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7

The structure of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 (pdb code 8glx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7, PDB code: 8glx:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg602 b:27.4 occ:1.00 OG1 G:THR143 2.1 16.6 1.0 O3G G:ATP601 2.1 20.3 1.0 O2G G:ATP601 2.2 20.3 1.0 PG G:ATP601 2.6 20.3 1.0 CB G:THR143 3.0 16.6 1.0 CG2 G:THR143 3.1 16.6 1.0 O3B G:ATP601 3.5 20.3 1.0 OE2 G:GLU233 3.6 25.4 1.0 O1G G:ATP601 3.9 20.3 1.0 CD G:GLU233 4.3 25.4 1.0 CA G:THR143 4.4 16.6 1.0 O2A G:ATP601 4.4 20.3 1.0 N G:THR143 4.8 16.6 1.0 CG G:GLU233 4.9 25.4 1.0

Magnesium binding site 2 out of 6 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:17.5 occ:1.00 OG1 E:THR143 2.5 23.1 1.0 O3B E:ADP601 2.5 33.1 1.0 CG E:GLU233 2.9 21.1 1.0 PB E:ADP601 3.6 33.1 1.0 OE2 E:GLU233 3.6 21.1 1.0 CD E:GLU233 3.7 21.1 1.0 OD1 E:ASP232 3.7 27.4 1.0 CB E:THR143 3.8 23.1 1.0 O1B E:ADP601 4.0 33.1 1.0 OE1 E:GLN235 4.1 37.2 1.0 CB E:GLU233 4.1 21.1 1.0 CG E:LYS142 4.1 20.9 1.0 O2B E:ADP601 4.2 33.1 1.0 CD E:LYS142 4.2 20.9 1.0 CA E:GLU233 4.2 21.1 1.0 N E:GLU233 4.5 21.1 1.0 NE2 E:GLN235 4.6 37.2 1.0 CG2 E:THR143 4.6 23.1 1.0 N E:THR143 4.7 23.1 1.0 CD E:GLN235 4.7 37.2 1.0 CA E:THR143 4.8 23.1 1.0 OE1 E:GLU233 4.9 21.1 1.0 O3A E:ADP601 4.9 33.1 1.0 CG E:ASP232 5.0 27.4 1.0

Magnesium binding site 3 out of 6 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg602 b:9.9 occ:1.00 O3B F:ADP601 2.6 27.4 1.0 OG1 F:THR143 3.1 25.8 1.0 OE2 F:GLU233 3.8 18.5 1.0 CG F:GLU233 3.9 18.5 1.0 PB F:ADP601 4.0 27.4 1.0 CB F:THR143 4.1 25.8 1.0 O2A F:ADP601 4.3 27.4 1.0 CD F:GLU233 4.3 18.5 1.0 O1B F:ADP601 4.7 27.4 1.0 O2B F:ADP601 4.7 27.4 1.0 CG2 F:THR143 4.8 25.8 1.0 O3A F:ADP601 5.0 27.4 1.0

Magnesium binding site 4 out of 6 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:44.2 occ:1.00 O3G C:ATP601 2.0 45.3 1.0 OG1 C:THR143 2.7 29.7 1.0 PG C:ATP601 3.2 45.3 1.0 O2G C:ATP601 3.5 45.3 1.0 OE2 C:GLU233 3.8 43.0 1.0 CB C:THR143 3.8 29.7 1.0 O1G C:ATP601 3.9 45.3 1.0 CG2 C:THR143 4.0 29.7 1.0 OD2 C:ASP232 4.1 39.4 1.0 CG C:GLU233 4.2 43.0 1.0 O3B C:ATP601 4.4 45.3 1.0 CD C:GLU233 4.5 43.0 1.0 CB C:ASP232 4.5 39.4 1.0 CG C:ASP232 4.7 39.4 1.0

Magnesium binding site 5 out of 6 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:19.7 occ:1.00 O1B A:ADP601 2.3 29.4 1.0 OG1 A:THR143 2.8 18.7 1.0 OE2 A:GLU233 2.8 20.2 1.0 CB A:THR143 3.1 18.7 1.0 CD A:GLU233 3.5 20.2 1.0 CG2 A:THR143 3.7 18.7 1.0 PB A:ADP601 3.7 29.4 1.0 OE1 A:GLU233 3.8 20.2 1.0 O2B A:ADP601 4.4 29.4 1.0 CA A:THR143 4.4 18.7 1.0 O2A A:ADP601 4.5 29.4 1.0 CG A:GLU233 4.5 20.2 1.0 O3B A:ADP601 4.6 29.4 1.0 N A:THR143 4.6 18.7 1.0 O1A A:ADP601 4.6 29.4 1.0 O3A A:ADP601 4.7 29.4 1.0 PA A:ADP601 4.8 29.4 1.0

Magnesium binding site 6 out of 6 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:17.9 occ:1.00 O1B B:ADP601 2.1 19.8 1.0 OE2 B:GLU233 2.2 28.2 1.0 PB B:ADP601 2.6 19.8 1.0 O2B B:ADP601 2.8 19.8 1.0 CD B:GLU233 2.9 28.2 1.0 CG B:GLU233 3.0 28.2 1.0 O3B B:ADP601 3.1 19.8 1.0 OG1 B:THR143 3.8 27.0 1.0 NE2 B:GLN235 4.0 34.7 1.0 OE1 B:GLU233 4.1 28.2 1.0 O3A B:ADP601 4.1 19.8 1.0 CB B:GLU233 4.4 28.2 1.0 OD1 B:ASP232 4.4 23.8 1.0 CE B:LYS142 4.5 22.2 1.0 CA B:GLU233 4.9 28.2 1.0 CD B:GLN235 4.9 34.7 1.0 O2A B:ADP601 5.0 19.8 1.0

Y.Shen, S.S.Krishnan, M.T.Petassi, M.A.Hancock, J.E.Peters, A.Guarne. Assembly of the TN7 Targeting Complex By A Regulated Stepwise Process. Mol.Cell V. 84 2368 2024.
ISSN: ISSN 1097-2765
PubMed: 38834067
DOI: 10.1016/J.MOLCEL.2024.05.012