Magnesium in PDB 8gty: Crystal Structure of Exopolyphosphatase (Ppx) From Zymomonas Mobilis in Complex with Magnesium Ions

The structure of Crystal Structure of Exopolyphosphatase (Ppx) From Zymomonas Mobilis in Complex with Magnesium Ions, PDB code: 8gty was solved by Z.Lu, J.Wang, B.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.51 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	122.023, 47.118, 89.48, 90, 124.45, 90
R / Rfree (%)	19.8 / 24.7

The binding sites of Magnesium atom in the Crystal Structure of Exopolyphosphatase (Ppx) From Zymomonas Mobilis in Complex with Magnesium Ions (pdb code 8gty). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Exopolyphosphatase (Ppx) From Zymomonas Mobilis in Complex with Magnesium Ions, PDB code: 8gty:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Exopolyphosphatase (Ppx) From Zymomonas Mobilis in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Exopolyphosphatase (Ppx) From Zymomonas Mobilis in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:14.4 occ:1.00 O A:HOH941 2.0 16.1 1.0 O A:HOH781 2.1 12.8 1.0 O A:HOH733 2.1 15.0 1.0 MG A:MG602 2.1 23.0 1.0 O A:HOH727 2.2 13.0 1.0 O A:HOH735 2.2 13.1 1.0 O A:HOH869 3.2 20.6 1.0 OE2 A:GLU137 3.8 15.3 1.0 O A:HOH704 4.1 14.5 1.0 O A:HOH888 4.1 11.8 1.0 OD2 A:ASP34 4.1 14.0 1.0 O A:HOH900 4.2 18.2 1.0 OD2 A:ASP158 4.3 13.4 1.0 OD1 A:ASP158 4.3 11.3 1.0 O A:HOH883 4.3 19.2 1.0 OD1 A:ASP34 4.3 16.2 1.0 CG A:ASP34 4.7 15.2 1.0 O A:HOH778 4.7 19.0 1.0 CG A:ASP158 4.7 15.0 1.0 CA A:GLY160 4.7 14.4 1.0 CG2 A:THR106 4.9 20.5 1.0 CB A:LEU310 5.0 8.5 1.0 CD A:GLU137 5.0 17.6 1.0 CD1 A:LEU310 5.0 13.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Exopolyphosphatase (Ppx) From Zymomonas Mobilis in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Exopolyphosphatase (Ppx) From Zymomonas Mobilis in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:23.0 occ:1.00 O A:HOH869 1.9 20.6 1.0 MG A:MG601 2.1 14.4 1.0 O A:HOH900 2.2 18.2 1.0 O A:HOH704 2.2 14.5 1.0 O A:HOH733 2.8 15.0 1.0 OE2 A:GLU137 2.9 15.3 1.0 O A:HOH888 3.0 11.8 1.0 O A:HOH941 3.0 16.1 1.0 O A:HOH781 3.0 12.8 1.0 O A:HOH735 3.2 13.1 1.0 O A:HOH767 3.2 15.4 1.0 CG2 A:THR106 3.9 20.5 1.0 CA A:GLY160 4.0 14.4 1.0 CD A:GLU137 4.1 17.6 1.0 O A:HOH727 4.3 13.0 1.0 OG A:SER163 4.4 16.7 1.0 O A:HOH814 4.5 18.8 1.0 N A:GLY161 4.6 14.8 1.0 OE1 A:GLU137 4.6 19.6 1.0 N A:GLY160 4.6 13.5 1.0 OD1 A:ASP158 4.7 11.3 1.0 C A:GLY160 4.7 16.2 1.0

Z.Aili, L.Zuokun. Crystal Structure of Exopolyphosphatase (Ppx) From Zymomonas Mobilis in Complex with Magnesium Ions To Be Published.