Magnesium in PDB 8h2u: X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Enzymatic activity of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
All present enzymatic activity of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.:
1.97.1.12;
Protein crystallography data
The structure of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii., PDB code: 8h2u
was solved by
H.Tanaka,
H.Kubota-Kawai,
Y.Misumi,
G.Kurisu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.74 /
3.40
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
194.57,
98.12,
210.13,
90,
94.56,
90
|
R / Rfree (%)
|
29.1 /
35.9
|
Other elements in 8h2u:
The structure of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
210;
Page 22, Binding sites: 211 -
211;
Binding sites:
The binding sites of Magnesium atom in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
(pdb code 8h2u). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 211 binding sites of Magnesium where determined in the
X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii., PDB code: 8h2u:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 211 in 8h2u
Go back to
Magnesium Binding Sites List in 8h2u
Magnesium binding site 1 out
of 211 in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg801
b:115.0
occ:1.00
|
MG
|
A:CLA801
|
0.0
|
115.0
|
1.0
|
NA
|
A:CLA801
|
1.9
|
114.1
|
1.0
|
NC
|
A:CLA801
|
2.0
|
110.4
|
1.0
|
NB
|
A:CLA801
|
2.0
|
105.8
|
1.0
|
ND
|
A:CLA801
|
2.0
|
121.5
|
1.0
|
C4D
|
A:CLA801
|
2.9
|
131.0
|
1.0
|
C4A
|
A:CLA801
|
2.9
|
120.4
|
1.0
|
C1C
|
A:CLA801
|
3.0
|
102.0
|
1.0
|
C1A
|
A:CLA801
|
3.0
|
125.5
|
1.0
|
C1B
|
A:CLA801
|
3.0
|
108.7
|
1.0
|
C4B
|
A:CLA801
|
3.1
|
96.2
|
1.0
|
C4C
|
A:CLA801
|
3.1
|
111.1
|
1.0
|
C1D
|
A:CLA801
|
3.2
|
117.8
|
1.0
|
CHB
|
A:CLA801
|
3.3
|
114.5
|
1.0
|
CAB
|
B:CLA805
|
3.4
|
92.9
|
1.0
|
CHA
|
A:CLA801
|
3.4
|
138.5
|
1.0
|
CHC
|
A:CLA801
|
3.4
|
93.2
|
1.0
|
CHD
|
A:CLA801
|
3.5
|
113.7
|
1.0
|
NE2
|
A:HIS676
|
3.5
|
151.6
|
1.0
|
C3B
|
B:CLA805
|
3.6
|
89.5
|
1.0
|
CE1
|
A:HIS676
|
3.6
|
149.6
|
1.0
|
C4B
|
B:CLA805
|
3.9
|
91.4
|
1.0
|
CHC
|
B:CLA805
|
4.1
|
90.4
|
1.0
|
CBB
|
B:CLA805
|
4.2
|
96.9
|
1.0
|
C3D
|
A:CLA801
|
4.2
|
130.9
|
1.0
|
C2B
|
B:CLA805
|
4.2
|
87.3
|
1.0
|
C2B
|
A:CLA801
|
4.2
|
107.8
|
1.0
|
C2C
|
A:CLA801
|
4.2
|
105.1
|
1.0
|
C3A
|
A:CLA801
|
4.3
|
131.0
|
1.0
|
C3B
|
A:CLA801
|
4.3
|
100.0
|
1.0
|
C3C
|
A:CLA801
|
4.3
|
108.0
|
1.0
|
C2D
|
A:CLA801
|
4.3
|
120.7
|
1.0
|
C2A
|
A:CLA801
|
4.3
|
132.6
|
1.0
|
CD2
|
A:HIS676
|
4.6
|
149.7
|
1.0
|
ND1
|
A:HIS676
|
4.7
|
142.2
|
1.0
|
NB
|
B:CLA805
|
4.7
|
93.8
|
1.0
|
CMB
|
B:CLA805
|
4.7
|
93.1
|
1.0
|
C1B
|
B:CLA805
|
4.9
|
89.5
|
1.0
|
CBD
|
A:CLA801
|
4.9
|
156.0
|
1.0
|
C1C
|
B:CLA805
|
5.0
|
94.9
|
1.0
|
|
Magnesium binding site 2 out
of 211 in 8h2u
Go back to
Magnesium Binding Sites List in 8h2u
Magnesium binding site 2 out
of 211 in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg802
b:80.7
occ:1.00
|
MG
|
A:CLA802
|
0.0
|
80.7
|
1.0
|
NB
|
A:CLA802
|
1.9
|
73.7
|
1.0
|
NC
|
A:CLA802
|
2.0
|
78.7
|
1.0
|
NA
|
A:CLA802
|
2.0
|
95.8
|
1.0
|
ND
|
A:CLA802
|
2.0
|
83.2
|
1.0
|
CE1
|
A:HIS53
|
2.7
|
133.3
|
1.0
|
C4D
|
A:CLA802
|
2.9
|
85.9
|
1.0
|
C1C
|
A:CLA802
|
3.0
|
77.5
|
1.0
|
C4A
|
A:CLA802
|
3.0
|
99.3
|
1.0
|
C1B
|
A:CLA802
|
3.0
|
78.2
|
1.0
|
C1A
|
A:CLA802
|
3.1
|
102.8
|
1.0
|
C4B
|
A:CLA802
|
3.1
|
68.2
|
1.0
|
NE2
|
A:HIS53
|
3.1
|
134.8
|
1.0
|
C1D
|
A:CLA802
|
3.1
|
90.5
|
1.0
|
C4C
|
A:CLA802
|
3.2
|
83.0
|
1.0
|
CHB
|
A:CLA802
|
3.4
|
87.0
|
1.0
|
CHC
|
A:CLA802
|
3.4
|
71.2
|
1.0
|
CHA
|
A:CLA802
|
3.4
|
95.1
|
1.0
|
CHD
|
A:CLA802
|
3.5
|
85.8
|
1.0
|
ND1
|
A:HIS53
|
3.8
|
129.2
|
1.0
|
CB
|
J:PRO12
|
4.0
|
113.5
|
1.0
|
CG
|
J:PRO12
|
4.0
|
115.0
|
1.0
|
C3D
|
A:CLA802
|
4.2
|
89.1
|
1.0
|
C2B
|
A:CLA802
|
4.2
|
75.4
|
1.0
|
C3B
|
A:CLA802
|
4.2
|
68.7
|
1.0
|
C2D
|
A:CLA802
|
4.3
|
97.5
|
1.0
|
CD2
|
A:HIS53
|
4.3
|
128.8
|
1.0
|
C2C
|
A:CLA802
|
4.3
|
81.6
|
1.0
|
C3A
|
A:CLA802
|
4.3
|
106.8
|
1.0
|
C3C
|
A:CLA802
|
4.3
|
85.8
|
1.0
|
C2A
|
A:CLA802
|
4.4
|
108.8
|
1.0
|
CG
|
A:HIS53
|
4.6
|
123.0
|
1.0
|
C22
|
J:LUT104
|
4.8
|
88.9
|
1.0
|
CBD
|
A:CLA802
|
5.0
|
98.0
|
1.0
|
|
Magnesium binding site 3 out
of 211 in 8h2u
Go back to
Magnesium Binding Sites List in 8h2u
Magnesium binding site 3 out
of 211 in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg803
b:91.4
occ:1.00
|
MG
|
A:CLA803
|
0.0
|
91.4
|
1.0
|
NB
|
A:CLA803
|
2.0
|
89.2
|
1.0
|
ND
|
A:CLA803
|
2.0
|
84.9
|
1.0
|
NA
|
A:CLA803
|
2.0
|
95.4
|
1.0
|
NC
|
A:CLA803
|
2.0
|
84.7
|
1.0
|
C4D
|
A:CLA803
|
2.9
|
88.5
|
1.0
|
C1C
|
A:CLA803
|
3.0
|
83.2
|
1.0
|
C4A
|
A:CLA803
|
3.0
|
93.6
|
1.0
|
C1A
|
A:CLA803
|
3.1
|
97.5
|
1.0
|
C1B
|
A:CLA803
|
3.1
|
89.7
|
1.0
|
C4B
|
A:CLA803
|
3.1
|
90.3
|
1.0
|
CE1
|
A:HIS57
|
3.1
|
125.5
|
1.0
|
C1D
|
A:CLA803
|
3.2
|
82.2
|
1.0
|
C4C
|
A:CLA803
|
3.2
|
82.0
|
1.0
|
CHA
|
A:CLA803
|
3.4
|
94.3
|
1.0
|
CHB
|
A:CLA803
|
3.4
|
89.8
|
1.0
|
CHC
|
A:CLA803
|
3.4
|
86.0
|
1.0
|
CHD
|
A:CLA803
|
3.6
|
81.0
|
1.0
|
NE2
|
A:HIS57
|
3.7
|
125.9
|
1.0
|
CBB
|
A:CLA802
|
3.9
|
74.8
|
1.0
|
ND1
|
A:HIS57
|
4.1
|
125.3
|
1.0
|
C3D
|
A:CLA803
|
4.2
|
86.3
|
1.0
|
C2B
|
A:CLA803
|
4.2
|
88.9
|
1.0
|
C2D
|
A:CLA803
|
4.3
|
82.5
|
1.0
|
C3B
|
A:CLA803
|
4.3
|
91.3
|
1.0
|
C2C
|
A:CLA803
|
4.3
|
80.9
|
1.0
|
C3A
|
A:CLA803
|
4.4
|
100.3
|
1.0
|
C3C
|
A:CLA803
|
4.4
|
81.5
|
1.0
|
C2A
|
A:CLA803
|
4.4
|
101.2
|
1.0
|
CBD
|
A:CLA803
|
4.9
|
94.3
|
1.0
|
CD2
|
A:HIS57
|
4.9
|
130.7
|
1.0
|
|
Magnesium binding site 4 out
of 211 in 8h2u
Go back to
Magnesium Binding Sites List in 8h2u
Magnesium binding site 4 out
of 211 in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg804
b:145.9
occ:1.00
|
MG
|
A:CLA804
|
0.0
|
145.9
|
1.0
|
NB
|
A:CLA804
|
2.0
|
145.1
|
1.0
|
ND
|
A:CLA804
|
2.0
|
142.4
|
1.0
|
NC
|
A:CLA804
|
2.0
|
140.9
|
1.0
|
NA
|
A:CLA804
|
2.0
|
146.6
|
1.0
|
CE1
|
A:HIS77
|
2.4
|
110.9
|
1.0
|
NE2
|
A:HIS77
|
2.8
|
111.4
|
1.0
|
C4D
|
A:CLA804
|
2.9
|
143.8
|
1.0
|
C1C
|
A:CLA804
|
3.0
|
139.7
|
1.0
|
C4A
|
A:CLA804
|
3.0
|
143.3
|
1.0
|
C1A
|
A:CLA804
|
3.0
|
148.7
|
1.0
|
C1B
|
A:CLA804
|
3.1
|
143.1
|
1.0
|
C4B
|
A:CLA804
|
3.1
|
142.5
|
1.0
|
C1D
|
A:CLA804
|
3.2
|
139.4
|
1.0
|
C4C
|
A:CLA804
|
3.2
|
133.3
|
1.0
|
ND1
|
A:HIS77
|
3.3
|
116.8
|
1.0
|
CHA
|
A:CLA804
|
3.4
|
146.6
|
1.0
|
CHB
|
A:CLA804
|
3.4
|
146.0
|
1.0
|
CHC
|
A:CLA804
|
3.4
|
144.3
|
1.0
|
CMB
|
A:CLA829
|
3.5
|
112.6
|
1.0
|
CHD
|
A:CLA804
|
3.6
|
131.7
|
1.0
|
CD2
|
A:HIS77
|
3.9
|
118.8
|
1.0
|
CBB
|
A:CLA829
|
4.1
|
126.5
|
1.0
|
CG
|
A:HIS77
|
4.1
|
123.5
|
1.0
|
C3D
|
A:CLA804
|
4.2
|
145.8
|
1.0
|
C2B
|
A:CLA804
|
4.2
|
132.3
|
1.0
|
C2D
|
A:CLA804
|
4.3
|
147.1
|
1.0
|
C3B
|
A:CLA804
|
4.3
|
135.7
|
1.0
|
C2C
|
A:CLA804
|
4.3
|
130.3
|
1.0
|
C3A
|
A:CLA804
|
4.3
|
142.5
|
1.0
|
C3C
|
A:CLA804
|
4.4
|
131.4
|
1.0
|
C2A
|
A:CLA804
|
4.4
|
146.2
|
1.0
|
CG1
|
A:VAL73
|
4.6
|
131.2
|
1.0
|
O
|
A:VAL73
|
4.6
|
146.7
|
1.0
|
C2B
|
A:CLA829
|
4.8
|
114.7
|
1.0
|
CBD
|
A:CLA804
|
4.9
|
145.1
|
1.0
|
CAB
|
A:CLA829
|
4.9
|
125.0
|
1.0
|
|
Magnesium binding site 5 out
of 211 in 8h2u
Go back to
Magnesium Binding Sites List in 8h2u
Magnesium binding site 5 out
of 211 in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg805
b:122.9
occ:1.00
|
MG
|
A:CLA805
|
0.0
|
122.9
|
1.0
|
NB
|
A:CLA805
|
2.0
|
125.0
|
1.0
|
NA
|
A:CLA805
|
2.0
|
122.3
|
1.0
|
ND
|
A:CLA805
|
2.0
|
127.0
|
1.0
|
NC
|
A:CLA805
|
2.0
|
129.3
|
1.0
|
NE2
|
A:GLN80
|
2.4
|
127.2
|
1.0
|
C4D
|
A:CLA805
|
2.9
|
125.5
|
1.0
|
C4A
|
A:CLA805
|
3.0
|
128.8
|
1.0
|
C1C
|
A:CLA805
|
3.0
|
123.4
|
1.0
|
C1A
|
A:CLA805
|
3.0
|
118.2
|
1.0
|
C1B
|
A:CLA805
|
3.1
|
127.3
|
1.0
|
C4B
|
A:CLA805
|
3.1
|
120.7
|
1.0
|
C1D
|
A:CLA805
|
3.1
|
121.9
|
1.0
|
C4C
|
A:CLA805
|
3.2
|
124.5
|
1.0
|
CD
|
A:GLN80
|
3.3
|
127.0
|
1.0
|
CHB
|
A:CLA805
|
3.4
|
130.3
|
1.0
|
CHA
|
A:CLA805
|
3.4
|
121.2
|
1.0
|
CHC
|
A:CLA805
|
3.4
|
118.8
|
1.0
|
OE1
|
A:GLN80
|
3.6
|
128.7
|
1.0
|
CHD
|
A:CLA805
|
3.6
|
123.6
|
1.0
|
C3D
|
A:CLA805
|
4.2
|
119.1
|
1.0
|
C2B
|
A:CLA805
|
4.2
|
123.3
|
1.0
|
C2D
|
A:CLA805
|
4.3
|
117.2
|
1.0
|
C3B
|
A:CLA805
|
4.3
|
120.3
|
1.0
|
C2C
|
A:CLA805
|
4.3
|
117.2
|
1.0
|
C3A
|
A:CLA805
|
4.3
|
126.8
|
1.0
|
C2A
|
A:CLA805
|
4.3
|
121.4
|
1.0
|
C3C
|
A:CLA805
|
4.4
|
114.9
|
1.0
|
CMA
|
A:CLA804
|
4.5
|
142.9
|
1.0
|
CG
|
A:GLN80
|
4.6
|
123.5
|
1.0
|
CBD
|
A:CLA805
|
4.9
|
117.9
|
1.0
|
|
Magnesium binding site 6 out
of 211 in 8h2u
Go back to
Magnesium Binding Sites List in 8h2u
Magnesium binding site 6 out
of 211 in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg806
b:119.7
occ:1.00
|
MG
|
A:CLA806
|
0.0
|
119.7
|
1.0
|
NB
|
A:CLA806
|
1.9
|
116.0
|
1.0
|
ND
|
A:CLA806
|
2.0
|
119.5
|
1.0
|
NC
|
A:CLA806
|
2.0
|
114.1
|
1.0
|
NA
|
A:CLA806
|
2.0
|
118.7
|
1.0
|
NE2
|
A:HIS94
|
2.9
|
110.4
|
1.0
|
C4D
|
A:CLA806
|
2.9
|
123.4
|
1.0
|
C1C
|
A:CLA806
|
3.0
|
113.1
|
1.0
|
C1B
|
A:CLA806
|
3.0
|
117.0
|
1.0
|
C4A
|
A:CLA806
|
3.0
|
113.2
|
1.0
|
C4B
|
A:CLA806
|
3.1
|
114.9
|
1.0
|
C1A
|
A:CLA806
|
3.1
|
114.8
|
1.0
|
C1D
|
A:CLA806
|
3.1
|
112.4
|
1.0
|
C4C
|
A:CLA806
|
3.2
|
108.2
|
1.0
|
CHB
|
A:CLA806
|
3.4
|
114.1
|
1.0
|
CHA
|
A:CLA806
|
3.4
|
121.2
|
1.0
|
CHC
|
A:CLA806
|
3.4
|
113.9
|
1.0
|
CHD
|
A:CLA806
|
3.6
|
111.8
|
1.0
|
CD2
|
A:HIS94
|
3.8
|
118.4
|
1.0
|
CE1
|
A:HIS94
|
3.9
|
113.6
|
1.0
|
C3D
|
A:CLA806
|
4.2
|
115.5
|
1.0
|
C2B
|
A:CLA806
|
4.2
|
124.0
|
1.0
|
C3B
|
A:CLA806
|
4.2
|
120.4
|
1.0
|
C2D
|
A:CLA806
|
4.3
|
105.4
|
1.0
|
C2C
|
A:CLA806
|
4.3
|
101.8
|
1.0
|
C3C
|
A:CLA806
|
4.4
|
97.6
|
1.0
|
C3A
|
A:CLA806
|
4.4
|
113.0
|
1.0
|
C2A
|
A:CLA806
|
4.4
|
112.3
|
1.0
|
CBD
|
A:CLA806
|
4.9
|
123.9
|
1.0
|
ND1
|
A:HIS94
|
5.0
|
115.6
|
1.0
|
CG
|
A:HIS94
|
5.0
|
120.0
|
1.0
|
|
Magnesium binding site 7 out
of 211 in 8h2u
Go back to
Magnesium Binding Sites List in 8h2u
Magnesium binding site 7 out
of 211 in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg807
b:136.5
occ:1.00
|
MG
|
A:CLA807
|
0.0
|
136.5
|
1.0
|
NB
|
A:CLA807
|
2.0
|
133.8
|
1.0
|
ND
|
A:CLA807
|
2.0
|
132.9
|
1.0
|
NC
|
A:CLA807
|
2.0
|
126.6
|
1.0
|
NA
|
A:CLA807
|
2.0
|
129.2
|
1.0
|
C4D
|
A:CLA807
|
2.9
|
134.0
|
1.0
|
C1C
|
A:CLA807
|
3.0
|
126.7
|
1.0
|
C4A
|
A:CLA807
|
3.0
|
125.7
|
1.0
|
C1A
|
A:CLA807
|
3.0
|
129.7
|
1.0
|
C1B
|
A:CLA807
|
3.1
|
135.7
|
1.0
|
C4B
|
A:CLA807
|
3.1
|
131.5
|
1.0
|
C4C
|
A:CLA807
|
3.1
|
118.1
|
1.0
|
C1D
|
A:CLA807
|
3.2
|
131.0
|
1.0
|
OE1
|
A:GLN116
|
3.2
|
125.2
|
1.0
|
CHA
|
A:CLA807
|
3.4
|
134.9
|
1.0
|
CHB
|
A:CLA807
|
3.4
|
130.3
|
1.0
|
CHC
|
A:CLA807
|
3.4
|
129.6
|
1.0
|
CHD
|
A:CLA807
|
3.6
|
123.3
|
1.0
|
CD
|
A:GLN116
|
4.1
|
124.7
|
1.0
|
C3D
|
A:CLA807
|
4.2
|
133.1
|
1.0
|
NE2
|
A:GLN116
|
4.2
|
117.7
|
1.0
|
C2B
|
A:CLA807
|
4.2
|
136.5
|
1.0
|
C3B
|
A:CLA807
|
4.2
|
138.5
|
1.0
|
C2D
|
A:CLA807
|
4.3
|
133.2
|
1.0
|
C2C
|
A:CLA807
|
4.3
|
123.2
|
1.0
|
C3A
|
A:CLA807
|
4.3
|
128.3
|
1.0
|
C3C
|
A:CLA807
|
4.3
|
117.6
|
1.0
|
C2A
|
A:CLA807
|
4.3
|
129.8
|
1.0
|
O1A
|
A:CLA807
|
4.8
|
131.3
|
1.0
|
CBD
|
A:CLA807
|
4.9
|
138.1
|
1.0
|
O2A
|
A:CLA827
|
4.9
|
154.6
|
1.0
|
|
Magnesium binding site 8 out
of 211 in 8h2u
Go back to
Magnesium Binding Sites List in 8h2u
Magnesium binding site 8 out
of 211 in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg808
b:113.3
occ:1.00
|
MG
|
A:CLA808
|
0.0
|
113.3
|
1.0
|
NB
|
A:CLA808
|
2.0
|
115.0
|
1.0
|
NA
|
A:CLA808
|
2.0
|
114.6
|
1.0
|
ND
|
A:CLA808
|
2.0
|
114.0
|
1.0
|
NC
|
A:CLA808
|
2.0
|
108.2
|
1.0
|
C4D
|
A:CLA808
|
2.9
|
109.6
|
1.0
|
C4A
|
A:CLA808
|
3.0
|
113.4
|
1.0
|
C1C
|
A:CLA808
|
3.0
|
106.7
|
1.0
|
C1A
|
A:CLA808
|
3.1
|
114.1
|
1.0
|
C1B
|
A:CLA808
|
3.1
|
113.1
|
1.0
|
C4B
|
A:CLA808
|
3.1
|
113.7
|
1.0
|
C1D
|
A:CLA808
|
3.1
|
112.2
|
1.0
|
C4C
|
A:CLA808
|
3.2
|
108.3
|
1.0
|
CHB
|
A:CLA808
|
3.4
|
111.3
|
1.0
|
OE1
|
A:GLN124
|
3.4
|
109.2
|
1.0
|
CD
|
A:GLN124
|
3.4
|
120.4
|
1.0
|
CHC
|
A:CLA808
|
3.4
|
108.5
|
1.0
|
CHA
|
A:CLA808
|
3.4
|
110.8
|
1.0
|
CHD
|
A:CLA808
|
3.5
|
112.2
|
1.0
|
NE2
|
A:GLN124
|
3.6
|
127.6
|
1.0
|
CG
|
A:GLN124
|
4.1
|
124.9
|
1.0
|
C3D
|
A:CLA808
|
4.2
|
105.1
|
1.0
|
C2B
|
A:CLA808
|
4.2
|
114.7
|
1.0
|
C2D
|
A:CLA808
|
4.3
|
109.9
|
1.0
|
C3B
|
A:CLA808
|
4.3
|
112.5
|
1.0
|
C2C
|
A:CLA808
|
4.3
|
102.3
|
1.0
|
C3A
|
A:CLA808
|
4.3
|
114.4
|
1.0
|
C3C
|
A:CLA808
|
4.3
|
105.0
|
1.0
|
C2A
|
A:CLA808
|
4.4
|
114.1
|
1.0
|
CBD
|
A:CLA808
|
5.0
|
112.2
|
1.0
|
|
Magnesium binding site 9 out
of 211 in 8h2u
Go back to
Magnesium Binding Sites List in 8h2u
Magnesium binding site 9 out
of 211 in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg809
b:134.6
occ:1.00
|
MG
|
A:CLA809
|
0.0
|
134.6
|
1.0
|
NB
|
A:CLA809
|
2.0
|
124.5
|
1.0
|
ND
|
A:CLA809
|
2.0
|
130.9
|
1.0
|
NA
|
A:CLA809
|
2.0
|
125.0
|
1.0
|
NC
|
A:CLA809
|
2.0
|
126.1
|
1.0
|
C4D
|
A:CLA809
|
2.9
|
126.0
|
1.0
|
C1C
|
A:CLA809
|
3.0
|
123.1
|
1.0
|
C4A
|
A:CLA809
|
3.0
|
118.2
|
1.0
|
NE2
|
A:HIS180
|
3.0
|
143.9
|
1.0
|
C1A
|
A:CLA809
|
3.0
|
115.7
|
1.0
|
C1B
|
A:CLA809
|
3.1
|
121.4
|
1.0
|
C4B
|
A:CLA809
|
3.1
|
126.9
|
1.0
|
C1D
|
A:CLA809
|
3.2
|
130.3
|
1.0
|
C4C
|
A:CLA809
|
3.2
|
120.5
|
1.0
|
CHB
|
A:CLA809
|
3.4
|
115.3
|
1.0
|
CHA
|
A:CLA809
|
3.4
|
117.2
|
1.0
|
CHC
|
A:CLA809
|
3.4
|
124.7
|
1.0
|
CHD
|
A:CLA809
|
3.6
|
123.5
|
1.0
|
CE1
|
A:HIS180
|
3.9
|
139.6
|
1.0
|
CD2
|
A:HIS180
|
4.1
|
141.6
|
1.0
|
C3D
|
A:CLA809
|
4.2
|
127.4
|
1.0
|
C2B
|
A:CLA809
|
4.2
|
128.7
|
1.0
|
C3B
|
A:CLA809
|
4.2
|
134.8
|
1.0
|
C2D
|
A:CLA809
|
4.3
|
131.8
|
1.0
|
C2C
|
A:CLA809
|
4.3
|
116.9
|
1.0
|
C3A
|
A:CLA809
|
4.3
|
116.8
|
1.0
|
C2A
|
A:CLA809
|
4.3
|
112.4
|
1.0
|
C3C
|
A:CLA809
|
4.4
|
117.5
|
1.0
|
CBA
|
A:CLA809
|
4.7
|
111.3
|
1.0
|
CBD
|
A:CLA809
|
4.9
|
120.4
|
1.0
|
|
Magnesium binding site 10 out
of 211 in 8h2u
Go back to
Magnesium Binding Sites List in 8h2u
Magnesium binding site 10 out
of 211 in the X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of X-Ray Structure of Photosystem I-Lhci Super Complex From Chlamydomonas Reinhardtii. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg810
b:121.7
occ:1.00
|
MG
|
A:CLA810
|
0.0
|
121.7
|
1.0
|
NB
|
A:CLA810
|
1.9
|
123.1
|
1.0
|
NA
|
A:CLA810
|
2.0
|
123.7
|
1.0
|
NC
|
A:CLA810
|
2.0
|
126.4
|
1.0
|
ND
|
A:CLA810
|
2.0
|
123.0
|
1.0
|
O1A
|
A:CLA803
|
2.7
|
115.6
|
1.0
|
C4D
|
A:CLA810
|
2.9
|
122.7
|
1.0
|
C4A
|
A:CLA810
|
3.0
|
128.8
|
1.0
|
C1C
|
A:CLA810
|
3.0
|
123.0
|
1.0
|
NE2
|
A:HIS182
|
3.0
|
145.8
|
1.0
|
C1B
|
A:CLA810
|
3.0
|
128.3
|
1.0
|
C1A
|
A:CLA810
|
3.1
|
123.7
|
1.0
|
C4B
|
A:CLA810
|
3.1
|
119.1
|
1.0
|
CGA
|
A:CLA803
|
3.1
|
117.9
|
1.0
|
C4C
|
A:CLA810
|
3.1
|
130.1
|
1.0
|
C1D
|
A:CLA810
|
3.2
|
125.1
|
1.0
|
CHB
|
A:CLA810
|
3.3
|
129.6
|
1.0
|
CHC
|
A:CLA810
|
3.4
|
115.7
|
1.0
|
CHA
|
A:CLA810
|
3.5
|
123.4
|
1.0
|
CHD
|
A:CLA810
|
3.6
|
129.9
|
1.0
|
O2A
|
A:CLA803
|
3.7
|
114.3
|
1.0
|
CE1
|
A:HIS182
|
3.8
|
149.4
|
1.0
|
CBA
|
A:CLA803
|
3.9
|
117.2
|
1.0
|
CD2
|
A:HIS182
|
4.0
|
144.4
|
1.0
|
O1A
|
A:CLA810
|
4.1
|
118.5
|
1.0
|
C3D
|
A:CLA810
|
4.2
|
118.1
|
1.0
|
C2B
|
A:CLA810
|
4.2
|
128.3
|
1.0
|
C3B
|
A:CLA810
|
4.2
|
124.3
|
1.0
|
C2C
|
A:CLA810
|
4.3
|
128.8
|
1.0
|
C2D
|
A:CLA810
|
4.3
|
121.3
|
1.0
|
C3A
|
A:CLA810
|
4.3
|
132.2
|
1.0
|
C3C
|
A:CLA810
|
4.3
|
129.1
|
1.0
|
C2A
|
A:CLA810
|
4.4
|
127.0
|
1.0
|
NE1
|
A:TRP29
|
4.9
|
113.0
|
1.0
|
CBD
|
A:CLA810
|
5.0
|
117.3
|
1.0
|
ND1
|
A:HIS182
|
5.0
|
145.2
|
1.0
|
CAA
|
A:CLA803
|
5.0
|
111.8
|
1.0
|
|
Reference:
C.Gerle,
Y.Misumi,
A.Kawamoto,
H.Tanaka,
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Three Structures of Psi-Lhci From Chlamydomonas Reinhardtii Suggest A Resting State Re-Activated By Ferredoxin. Biochim Biophys Acta 48986 2023BIOENERG.
ISSN: ISSN 1879-2650
PubMed: 37270022
DOI: 10.1016/J.BBABIO.2023.148986
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