Atomistry » Magnesium » PDB 8gyw-8h7a » 8h41
Atomistry »
  Magnesium »
    PDB 8gyw-8h7a »
      8h41 »

Magnesium in PDB 8h41: Crystal Structure of A Decarboxylase From Trichosporon Moniliiforme in Complex with O-Nitrophenol

Enzymatic activity of Crystal Structure of A Decarboxylase From Trichosporon Moniliiforme in Complex with O-Nitrophenol

All present enzymatic activity of Crystal Structure of A Decarboxylase From Trichosporon Moniliiforme in Complex with O-Nitrophenol:
4.1.1.91;

Protein crystallography data

The structure of Crystal Structure of A Decarboxylase From Trichosporon Moniliiforme in Complex with O-Nitrophenol, PDB code: 8h41 was solved by J.Gao, Y.P.Zhao, Q.Li, W.D.Liu, X.Sheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.93 / 1.78
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.916, 92.31, 128.66, 90, 90, 90
R / Rfree (%) 16.6 / 19.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Decarboxylase From Trichosporon Moniliiforme in Complex with O-Nitrophenol (pdb code 8h41). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Decarboxylase From Trichosporon Moniliiforme in Complex with O-Nitrophenol, PDB code: 8h41:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8h41

Go back to Magnesium Binding Sites List in 8h41
Magnesium binding site 1 out of 2 in the Crystal Structure of A Decarboxylase From Trichosporon Moniliiforme in Complex with O-Nitrophenol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Decarboxylase From Trichosporon Moniliiforme in Complex with O-Nitrophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:16.1
occ:1.00
OE2 A:GLU8 2.0 15.8 1.0
O3 A:OPO401 2.1 19.9 1.0
OD1 A:ASP298 2.1 21.2 1.0
OH A:OPO401 2.2 17.1 1.0
NE2 A:HIS169 2.2 17.4 1.0
O A:HOH719 2.3 25.0 1.0
N1 A:OPO401 3.0 28.0 1.0
CG A:ASP298 3.0 21.6 1.0
CE1 A:HIS169 3.0 12.9 1.0
C2 A:OPO401 3.1 20.0 1.0
CD A:GLU8 3.2 15.1 1.0
OD2 A:ASP298 3.3 21.3 1.0
CD2 A:HIS169 3.3 16.3 1.0
C1 A:OPO401 3.4 20.5 1.0
CG A:GLU8 3.7 16.1 1.0
O A:HOH542 4.0 16.0 1.0
O2 A:OPO401 4.1 19.6 1.0
NE2 A:HIS224 4.1 17.9 1.0
O A:HOH686 4.2 13.8 1.0
OE1 A:GLU8 4.2 15.0 1.0
ND1 A:HIS169 4.2 12.3 1.0
O A:GLU8 4.3 18.3 1.0
C3 A:OPO401 4.3 19.9 1.0
CB A:ASP298 4.4 17.9 1.0
CG A:HIS169 4.4 13.5 1.0
CE1 A:HIS224 4.4 16.7 1.0
CA A:ASP298 4.7 13.3 1.0
CB A:GLU8 4.7 14.7 1.0
C6 A:OPO401 4.8 19.7 1.0

Magnesium binding site 2 out of 2 in 8h41

Go back to Magnesium Binding Sites List in 8h41
Magnesium binding site 2 out of 2 in the Crystal Structure of A Decarboxylase From Trichosporon Moniliiforme in Complex with O-Nitrophenol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Decarboxylase From Trichosporon Moniliiforme in Complex with O-Nitrophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:14.8
occ:1.00
OE2 B:GLU8 2.1 12.5 1.0
O3 B:OPO401 2.1 20.2 1.0
OD1 B:ASP298 2.1 22.4 1.0
OH B:OPO401 2.2 15.6 1.0
O B:HOH686 2.2 25.0 1.0
NE2 B:HIS169 2.2 10.2 1.0
CG B:ASP298 2.9 23.1 1.0
N1 B:OPO401 3.1 22.5 1.0
C2 B:OPO401 3.1 14.4 1.0
CD B:GLU8 3.2 14.7 1.0
CE1 B:HIS169 3.2 10.2 1.0
OD2 B:ASP298 3.2 21.7 1.0
CD2 B:HIS169 3.2 16.7 1.0
C1 B:OPO401 3.5 18.3 1.0
CG B:GLU8 3.6 14.1 1.0
O B:HOH743 4.1 13.5 1.0
O2 B:OPO401 4.1 19.0 1.0
O B:HOH643 4.1 12.7 1.0
NE2 B:HIS224 4.2 12.7 1.0
OE1 B:GLU8 4.2 14.3 1.0
O B:GLU8 4.2 14.0 1.0
CB B:ASP298 4.3 14.5 1.0
ND1 B:HIS169 4.3 11.1 1.0
C3 B:OPO401 4.4 17.9 1.0
CE1 B:HIS224 4.4 13.4 1.0
CG B:HIS169 4.4 9.2 1.0
CA B:ASP298 4.7 16.5 1.0
CB B:GLU8 4.7 11.8 1.0
C6 B:OPO401 4.8 18.3 1.0

Reference:

F.Chen, Y.Zhao, C.Zhang, W.Wang, J.Gao, Q.Li, H.Qin, Y.Dai, W.Liu, F.Liu, H.Su, X.Sheng. A Combined Computational-Experimental Study on the Substrate Binding and Reaction Mechanism of Salicylic Acid Decarboxylase Catalysts V. 12 2022.
ISSN: ESSN 2073-4344
DOI: 10.3390/CATAL12121577
Page generated: Fri Oct 4 04:18:03 2024

Last articles

Na in 6CL5
Na in 6CNI
Na in 6CPN
Na in 6CPM
Na in 6CPR
Na in 6CPQ
Na in 6CIH
Na in 6CHR
Na in 6CPL
Na in 6CO7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy