Magnesium in PDB 8hbf: Structure of Human Soluble Guanylate Cyclase in the No+Rio State at 3.1 Angstrom

Enzymatic activity of Structure of Human Soluble Guanylate Cyclase in the No+Rio State at 3.1 Angstrom

All present enzymatic activity of Structure of Human Soluble Guanylate Cyclase in the No+Rio State at 3.1 Angstrom:
4.6.1.2;

Other elements in 8hbf:

The structure of Structure of Human Soluble Guanylate Cyclase in the No+Rio State at 3.1 Angstrom also contains other interesting chemical elements:

Fluorine (F) 1 atom
Iron (Fe) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Human Soluble Guanylate Cyclase in the No+Rio State at 3.1 Angstrom (pdb code 8hbf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Human Soluble Guanylate Cyclase in the No+Rio State at 3.1 Angstrom, PDB code: 8hbf:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8hbf

Go back to Magnesium Binding Sites List in 8hbf
Magnesium binding site 1 out of 2 in the Structure of Human Soluble Guanylate Cyclase in the No+Rio State at 3.1 Angstrom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Human Soluble Guanylate Cyclase in the No+Rio State at 3.1 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:37.7
occ:1.00
O5' A:G2P1001 2.0 51.4 1.0
C3A A:G2P1001 2.3 49.2 1.0
PA A:G2P1001 2.4 62.5 1.0
MG A:MG1003 2.5 33.2 1.0
OD2 A:ASP530 2.8 30.8 1.0
OD2 A:ASP486 2.9 41.5 1.0
OD1 A:ASP530 3.0 35.3 1.0
C5' A:G2P1001 3.2 50.6 1.0
O1A A:G2P1001 3.3 56.6 1.0
O3B A:G2P1001 3.3 53.4 1.0
CG A:ASP530 3.3 30.6 1.0
PB A:G2P1001 3.4 57.0 1.0
O2A A:G2P1001 3.7 58.8 1.0
CG A:ASP486 3.8 41.7 1.0
OD1 A:ASP486 4.0 40.3 1.0
C3' A:G2P1001 4.1 58.1 1.0
C4' A:G2P1001 4.2 49.5 1.0
O1B A:G2P1001 4.4 52.9 1.0
O2B A:G2P1001 4.5 50.6 1.0
O A:ILE487 4.7 38.7 1.0
O3' A:G2P1001 4.7 55.8 1.0
CB A:ASP530 4.8 20.1 1.0
PG A:G2P1001 4.8 65.2 1.0

Magnesium binding site 2 out of 2 in 8hbf

Go back to Magnesium Binding Sites List in 8hbf
Magnesium binding site 2 out of 2 in the Structure of Human Soluble Guanylate Cyclase in the No+Rio State at 3.1 Angstrom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Human Soluble Guanylate Cyclase in the No+Rio State at 3.1 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:33.2
occ:1.00
O3B A:G2P1001 2.0 53.4 1.0
C3A A:G2P1001 2.3 49.2 1.0
PB A:G2P1001 2.3 57.0 1.0
O A:ILE487 2.4 38.7 1.0
MG A:MG1002 2.5 37.7 1.0
OD1 A:ASP486 2.5 40.3 1.0
OD2 A:ASP486 2.6 41.5 1.0
O2B A:G2P1001 2.7 50.6 1.0
OD2 A:ASP530 2.7 30.8 1.0
CG A:ASP486 2.9 41.7 1.0
PG A:G2P1001 3.4 65.2 1.0
O1G A:G2P1001 3.5 49.0 1.0
C A:ILE487 3.6 34.6 1.0
PA A:G2P1001 3.8 62.5 1.0
CG A:ASP530 3.9 30.6 1.0
O1B A:G2P1001 3.9 52.9 1.0
O2G A:G2P1001 3.9 57.1 1.0
N A:ILE487 4.1 38.1 1.0
O5' A:G2P1001 4.2 51.4 1.0
O1A A:G2P1001 4.2 56.6 1.0
CB A:PHE490 4.3 42.3 1.0
OD1 A:ASP530 4.3 35.3 1.0
CB A:ASP486 4.3 30.0 1.0
O3G A:G2P1001 4.4 57.5 1.0
CA A:ILE487 4.4 31.3 1.0
NH2 A:ARG574 4.5 32.6 1.0
N A:VAL488 4.5 35.2 1.0
N A:PHE490 4.6 41.0 1.0
CA A:VAL488 4.6 37.7 1.0
C A:ASP486 4.6 37.1 1.0
N A:GLY489 4.8 47.8 1.0
CA A:ASP486 4.9 28.4 1.0
O2A A:G2P1001 5.0 58.8 1.0
C A:VAL488 5.0 42.7 1.0

Reference:

R.Liu, Y.Kang, L.Chen. No Binds to the Distal Site of Haem in the Fully Activated Soluble Guanylate Cyclase. Nitric Oxide V.-135 17 2023.
ISSN: ESSN 1089-8611
PubMed: 36972843
DOI: 10.1016/J.NIOX.2023.03.002
Page generated: Tue Apr 25 23:39:23 2023

Last articles

Mg in 7VNY
Mg in 7VHR
Mg in 7VNM
Mg in 7VP9
Mg in 7VRD
Mg in 7VS9
Mg in 7VS8
Mg in 7VQB
Mg in 7VQA
Mg in 7VQ9
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy