Magnesium in PDB 8hf5: Cryo-Em Structure of Nucleotide-Bound Coma at Outward-Facing State with Ec Gate Open Conformation

The binding sites of Magnesium atom in the Cryo-Em Structure of Nucleotide-Bound Coma at Outward-Facing State with Ec Gate Open Conformation (pdb code 8hf5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Nucleotide-Bound Coma at Outward-Facing State with Ec Gate Open Conformation, PDB code: 8hf5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Nucleotide-Bound Coma at Outward-Facing State with Ec Gate Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Nucleotide-Bound Coma at Outward-Facing State with Ec Gate Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:143.9 occ:1.00 O2B A:AGS801 2.1 163.8 1.0 OG1 A:THR524 2.1 109.1 1.0 O2G A:AGS801 2.2 161.2 1.0 CB A:THR524 3.2 109.1 1.0 PG A:AGS801 3.3 162.2 1.0 OE1 A:GLN565 3.3 110.1 1.0 PB A:AGS801 3.3 163.7 1.0 O2A A:AGS801 3.5 161.3 1.0 O3B A:AGS801 3.6 163.0 1.0 O3A A:AGS801 3.9 162.5 1.0 S1G A:AGS801 4.0 164.1 1.0 CD A:GLN565 4.1 110.1 1.0 NE2 A:GLN565 4.1 110.1 1.0 N A:THR524 4.1 109.1 1.0 PA A:AGS801 4.1 161.4 1.0 CG2 A:THR524 4.2 109.1 1.0 CA A:THR524 4.3 109.1 1.0 O1A A:AGS801 4.4 161.9 1.0 O3G A:AGS801 4.5 161.0 1.0 O1B A:AGS801 4.6 164.3 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Nucleotide-Bound Coma at Outward-Facing State with Ec Gate Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Nucleotide-Bound Coma at Outward-Facing State with Ec Gate Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:143.9 occ:1.00 O2B B:AGS801 2.1 163.8 1.0 O2G B:AGS801 2.2 161.2 1.0 OG1 B:THR524 2.4 110.1 1.0 CB B:THR524 3.3 110.1 1.0 PG B:AGS801 3.3 162.2 1.0 PB B:AGS801 3.3 163.7 1.0 OE1 B:GLN565 3.5 107.3 1.0 O2A B:AGS801 3.5 161.3 1.0 O3B B:AGS801 3.6 163.0 1.0 O3A B:AGS801 3.9 162.5 1.0 S1G B:AGS801 4.0 164.1 1.0 PA B:AGS801 4.1 161.4 1.0 N B:THR524 4.2 110.1 1.0 CD B:GLN565 4.2 107.3 1.0 NE2 B:GLN565 4.2 107.3 1.0 CG2 B:THR524 4.3 110.1 1.0 CA B:THR524 4.4 110.1 1.0 O1A B:AGS801 4.4 161.9 1.0 O3G B:AGS801 4.5 161.0 1.0 O1B B:AGS801 4.6 164.3 1.0 OE2 B:GLU647 4.6 117.5 1.0 OD2 B:ASP646 5.0 112.8 1.0

Y.Lin, X.Xin, L.Min. Nucleotide-Bound Coma at Outward-Facing Open Conformation To Be Published.