Magnesium in PDB 8hg3: Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Magnesium Binding Sites:
Magnesium binding site 1 out
of 42 in 8hg3
Go back to
Magnesium Binding Sites List in 8hg3
Magnesium binding site 1 out
of 42 in the Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg301
b:82.3
occ:1.00
|
MG
|
S:CLA301
|
0.0
|
82.3
|
1.0
|
NB
|
S:CLA301
|
2.0
|
61.5
|
1.0
|
ND
|
S:CLA301
|
2.0
|
70.2
|
1.0
|
NA
|
S:CLA301
|
2.1
|
76.2
|
1.0
|
NC
|
S:CLA301
|
2.1
|
68.4
|
1.0
|
OE1
|
S:GLU61
|
2.2
|
75.0
|
1.0
|
CD
|
S:GLU61
|
2.8
|
73.1
|
1.0
|
C4D
|
S:CLA301
|
2.9
|
63.5
|
1.0
|
C1B
|
S:CLA301
|
3.0
|
64.1
|
1.0
|
C4B
|
S:CLA301
|
3.0
|
63.8
|
1.0
|
C4A
|
S:CLA301
|
3.0
|
70.8
|
1.0
|
OE2
|
S:GLU61
|
3.1
|
72.6
|
1.0
|
C1C
|
S:CLA301
|
3.1
|
69.9
|
1.0
|
C1D
|
S:CLA301
|
3.1
|
68.9
|
1.0
|
C4C
|
S:CLA301
|
3.2
|
62.0
|
1.0
|
C1A
|
S:CLA301
|
3.2
|
70.1
|
1.0
|
C01
|
S:Q6L316
|
3.3
|
61.6
|
1.0
|
CHB
|
S:CLA301
|
3.4
|
71.9
|
1.0
|
CHC
|
S:CLA301
|
3.4
|
72.3
|
1.0
|
CHA
|
S:CLA301
|
3.4
|
67.5
|
1.0
|
CHD
|
S:CLA301
|
3.6
|
70.7
|
1.0
|
NE
|
S:ARG186
|
3.9
|
62.6
|
1.0
|
CG
|
S:GLU61
|
4.0
|
67.2
|
1.0
|
NH2
|
S:ARG186
|
4.1
|
66.0
|
1.0
|
C3D
|
S:CLA301
|
4.2
|
61.4
|
1.0
|
C02
|
S:Q6L316
|
4.2
|
61.1
|
1.0
|
C2B
|
S:CLA301
|
4.2
|
61.1
|
1.0
|
C3B
|
S:CLA301
|
4.3
|
61.8
|
1.0
|
C2D
|
S:CLA301
|
4.3
|
64.4
|
1.0
|
C2C
|
S:CLA301
|
4.3
|
63.8
|
1.0
|
CZ
|
S:ARG186
|
4.3
|
66.8
|
1.0
|
C3A
|
S:CLA301
|
4.4
|
68.5
|
1.0
|
C3C
|
S:CLA301
|
4.4
|
55.7
|
1.0
|
C2A
|
S:CLA301
|
4.5
|
65.7
|
1.0
|
CB
|
S:GLU61
|
4.6
|
65.1
|
1.0
|
C07
|
S:Q6L316
|
4.7
|
61.1
|
1.0
|
CD
|
S:ARG186
|
4.8
|
64.5
|
1.0
|
CG
|
S:ARG186
|
4.9
|
61.4
|
1.0
|
CBD
|
S:CLA301
|
4.9
|
70.6
|
1.0
|
|
Magnesium binding site 2 out
of 42 in 8hg3
Go back to
Magnesium Binding Sites List in 8hg3
Magnesium binding site 2 out
of 42 in the Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg302
b:73.3
occ:1.00
|
MG
|
S:CLA302
|
0.0
|
73.3
|
1.0
|
NB
|
S:CLA302
|
2.0
|
72.5
|
1.0
|
ND
|
S:CLA302
|
2.0
|
71.9
|
1.0
|
NC
|
S:CLA302
|
2.1
|
70.5
|
1.0
|
NA
|
S:CLA302
|
2.1
|
71.8
|
1.0
|
NE2
|
S:HIS64
|
2.2
|
79.6
|
1.0
|
CD2
|
S:HIS64
|
2.8
|
67.1
|
1.0
|
C4D
|
S:CLA302
|
2.9
|
65.4
|
1.0
|
C1B
|
S:CLA302
|
3.0
|
72.1
|
1.0
|
C4B
|
S:CLA302
|
3.1
|
71.7
|
1.0
|
C1C
|
S:CLA302
|
3.1
|
72.5
|
1.0
|
C4A
|
S:CLA302
|
3.1
|
66.8
|
1.0
|
C1A
|
S:CLA302
|
3.1
|
68.1
|
1.0
|
C4C
|
S:CLA302
|
3.2
|
67.6
|
1.0
|
C1D
|
S:CLA302
|
3.2
|
75.4
|
1.0
|
CE1
|
S:HIS64
|
3.3
|
81.2
|
1.0
|
CHC
|
S:CLA302
|
3.4
|
73.1
|
1.0
|
CHB
|
S:CLA302
|
3.4
|
66.2
|
1.0
|
CHA
|
S:CLA302
|
3.5
|
61.2
|
1.0
|
CHD
|
S:CLA302
|
3.6
|
72.6
|
1.0
|
CG
|
S:HIS64
|
4.0
|
61.1
|
1.0
|
ND1
|
S:HIS64
|
4.2
|
76.3
|
1.0
|
C3D
|
S:CLA302
|
4.2
|
68.0
|
1.0
|
C2B
|
S:CLA302
|
4.3
|
75.7
|
1.0
|
C3B
|
S:CLA302
|
4.3
|
71.6
|
1.0
|
C2C
|
S:CLA302
|
4.3
|
75.1
|
1.0
|
C2D
|
S:CLA302
|
4.3
|
72.6
|
1.0
|
C3C
|
S:CLA302
|
4.4
|
71.6
|
1.0
|
C3A
|
S:CLA302
|
4.4
|
67.8
|
1.0
|
C2A
|
S:CLA302
|
4.5
|
72.3
|
1.0
|
CBB
|
S:CLA301
|
4.5
|
70.2
|
1.0
|
CBD
|
S:CLA302
|
4.9
|
66.2
|
1.0
|
|
Magnesium binding site 3 out
of 42 in 8hg3
Go back to
Magnesium Binding Sites List in 8hg3
Magnesium binding site 3 out
of 42 in the Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg303
b:92.2
occ:1.00
|
MG
|
S:CLA303
|
0.0
|
92.2
|
1.0
|
ND
|
S:CLA303
|
2.0
|
81.5
|
1.0
|
NB
|
S:CLA303
|
2.0
|
87.2
|
1.0
|
NC
|
S:CLA303
|
2.1
|
85.0
|
1.0
|
NA
|
S:CLA303
|
2.1
|
80.4
|
1.0
|
C4D
|
S:CLA303
|
2.9
|
77.5
|
1.0
|
C1B
|
S:CLA303
|
3.0
|
78.8
|
1.0
|
C4A
|
S:CLA303
|
3.0
|
80.5
|
1.0
|
C4B
|
S:CLA303
|
3.1
|
83.1
|
1.0
|
C1C
|
S:CLA303
|
3.1
|
81.0
|
1.0
|
C1D
|
S:CLA303
|
3.1
|
82.3
|
1.0
|
C4C
|
S:CLA303
|
3.2
|
83.6
|
1.0
|
C1A
|
S:CLA303
|
3.2
|
78.4
|
1.0
|
CHB
|
S:CLA303
|
3.4
|
80.9
|
1.0
|
CHC
|
S:CLA303
|
3.4
|
82.7
|
1.0
|
CHA
|
S:CLA303
|
3.5
|
77.6
|
1.0
|
O23
|
S:NEX317
|
3.5
|
86.4
|
1.0
|
CHD
|
S:CLA303
|
3.5
|
85.2
|
1.0
|
C24
|
S:NEX317
|
3.9
|
80.8
|
1.0
|
CA
|
S:GLY74
|
4.0
|
72.0
|
1.0
|
C23
|
S:NEX317
|
4.2
|
84.1
|
1.0
|
C2B
|
S:CLA303
|
4.2
|
75.8
|
1.0
|
C3D
|
S:CLA303
|
4.2
|
77.9
|
1.0
|
C3B
|
S:CLA303
|
4.3
|
77.3
|
1.0
|
C2D
|
S:CLA303
|
4.3
|
77.2
|
1.0
|
C2C
|
S:CLA303
|
4.3
|
81.2
|
1.0
|
C3C
|
S:CLA303
|
4.4
|
81.8
|
1.0
|
C22
|
S:NEX317
|
4.4
|
80.7
|
1.0
|
C3A
|
S:CLA303
|
4.4
|
77.2
|
1.0
|
O
|
S:GLY74
|
4.4
|
76.1
|
1.0
|
C2A
|
S:CLA303
|
4.5
|
77.7
|
1.0
|
C
|
S:GLY74
|
4.6
|
67.9
|
1.0
|
C33
|
S:Q6L316
|
4.6
|
73.5
|
1.0
|
CB
|
S:ALA78
|
4.8
|
82.0
|
1.0
|
C40
|
S:Q6L316
|
4.8
|
64.0
|
1.0
|
C25
|
S:NEX317
|
4.9
|
81.5
|
1.0
|
CBD
|
S:CLA303
|
5.0
|
79.1
|
1.0
|
|
Magnesium binding site 4 out
of 42 in 8hg3
Go back to
Magnesium Binding Sites List in 8hg3
Magnesium binding site 4 out
of 42 in the Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg304
b:115.4
occ:1.00
|
MG
|
S:CHL304
|
0.0
|
115.4
|
1.0
|
ND
|
S:CHL304
|
2.0
|
109.7
|
1.0
|
NB
|
S:CHL304
|
2.0
|
106.7
|
1.0
|
NC
|
S:CHL304
|
2.1
|
112.0
|
1.0
|
NA
|
S:CHL304
|
2.1
|
104.0
|
1.0
|
O
|
S:LEU112
|
2.2
|
104.8
|
1.0
|
C4D
|
S:CHL304
|
2.9
|
104.6
|
1.0
|
CA
|
S:ALA113
|
3.0
|
99.3
|
1.0
|
C1B
|
S:CHL304
|
3.0
|
107.7
|
1.0
|
C4B
|
S:CHL304
|
3.1
|
106.2
|
1.0
|
C4A
|
S:CHL304
|
3.1
|
106.7
|
1.0
|
C1C
|
S:CHL304
|
3.1
|
106.5
|
1.0
|
C1D
|
S:CHL304
|
3.1
|
107.7
|
1.0
|
C4C
|
S:CHL304
|
3.1
|
107.3
|
1.0
|
C
|
S:LEU112
|
3.1
|
103.7
|
1.0
|
C1A
|
S:CHL304
|
3.2
|
102.0
|
1.0
|
N
|
S:ALA113
|
3.4
|
98.9
|
1.0
|
CB
|
S:ALA113
|
3.4
|
99.7
|
1.0
|
CHC
|
S:CHL304
|
3.5
|
106.0
|
1.0
|
CHB
|
S:CHL304
|
3.5
|
108.5
|
1.0
|
CHD
|
S:CHL304
|
3.5
|
107.2
|
1.0
|
CHA
|
S:CHL304
|
3.5
|
105.6
|
1.0
|
C3D
|
S:CHL304
|
4.2
|
103.7
|
1.0
|
C
|
S:ALA113
|
4.3
|
104.0
|
1.0
|
C2B
|
S:CHL304
|
4.3
|
107.0
|
1.0
|
C2D
|
S:CHL304
|
4.3
|
102.3
|
1.0
|
C3B
|
S:CHL304
|
4.3
|
106.1
|
1.0
|
C2C
|
S:CHL304
|
4.3
|
103.4
|
1.0
|
C3C
|
S:CHL304
|
4.4
|
102.2
|
1.0
|
C3A
|
S:CHL304
|
4.4
|
108.1
|
1.0
|
C2A
|
S:CHL304
|
4.5
|
103.7
|
1.0
|
CA
|
S:LEU112
|
4.5
|
105.7
|
1.0
|
CD
|
S:PRO114
|
4.6
|
110.0
|
1.0
|
N
|
S:PRO114
|
4.8
|
112.2
|
1.0
|
CBD
|
S:CHL304
|
4.9
|
112.0
|
1.0
|
CG
|
S:LEU112
|
5.0
|
107.3
|
1.0
|
|
Magnesium binding site 5 out
of 42 in 8hg3
Go back to
Magnesium Binding Sites List in 8hg3
Magnesium binding site 5 out
of 42 in the Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg305
b:96.9
occ:1.00
|
MG
|
S:CHL305
|
0.0
|
96.9
|
1.0
|
NB
|
S:CHL305
|
2.0
|
89.2
|
1.0
|
ND
|
S:CHL305
|
2.0
|
76.2
|
1.0
|
NA
|
S:CHL305
|
2.1
|
82.9
|
1.0
|
NC
|
S:CHL305
|
2.1
|
85.9
|
1.0
|
OE1
|
S:GLU129
|
2.9
|
92.3
|
1.0
|
C4D
|
S:CHL305
|
2.9
|
75.1
|
1.0
|
C1B
|
S:CHL305
|
3.0
|
82.8
|
1.0
|
C4B
|
S:CHL305
|
3.0
|
84.7
|
1.0
|
C4A
|
S:CHL305
|
3.0
|
82.4
|
1.0
|
C1C
|
S:CHL305
|
3.1
|
84.4
|
1.0
|
C1D
|
S:CHL305
|
3.1
|
79.2
|
1.0
|
C4C
|
S:CHL305
|
3.2
|
79.2
|
1.0
|
C1A
|
S:CHL305
|
3.2
|
82.3
|
1.0
|
CHC
|
S:CHL305
|
3.4
|
83.1
|
1.0
|
CHB
|
S:CHL305
|
3.4
|
83.1
|
1.0
|
CHA
|
S:CHL305
|
3.5
|
77.6
|
1.0
|
CHD
|
S:CHL305
|
3.6
|
79.8
|
1.0
|
CG1
|
S:VAL125
|
3.8
|
81.2
|
1.0
|
CD
|
S:GLU129
|
3.9
|
87.5
|
1.0
|
C3D
|
S:CHL305
|
4.2
|
82.9
|
1.0
|
C2B
|
S:CHL305
|
4.3
|
82.8
|
1.0
|
C3B
|
S:CHL305
|
4.3
|
78.7
|
1.0
|
C2D
|
S:CHL305
|
4.3
|
82.8
|
1.0
|
C38
|
S:NEX317
|
4.4
|
79.9
|
1.0
|
C2C
|
S:CHL305
|
4.4
|
80.6
|
1.0
|
C3A
|
S:CHL305
|
4.4
|
83.7
|
1.0
|
C3C
|
S:CHL305
|
4.4
|
81.8
|
1.0
|
OE2
|
S:GLU129
|
4.4
|
80.3
|
1.0
|
C2A
|
S:CHL305
|
4.5
|
85.0
|
1.0
|
CBA
|
S:CLA303
|
4.6
|
83.2
|
1.0
|
CGA
|
S:CLA303
|
4.8
|
84.6
|
1.0
|
CB
|
S:GLU129
|
4.8
|
85.9
|
1.0
|
CG
|
S:GLU129
|
4.9
|
85.6
|
1.0
|
CBD
|
S:CHL305
|
4.9
|
83.4
|
1.0
|
|
Magnesium binding site 6 out
of 42 in 8hg3
Go back to
Magnesium Binding Sites List in 8hg3
Magnesium binding site 6 out
of 42 in the Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg306
b:81.7
occ:1.00
|
MG
|
S:CHL306
|
0.0
|
81.7
|
1.0
|
ND
|
S:CHL306
|
2.0
|
75.9
|
1.0
|
NB
|
S:CHL306
|
2.0
|
72.7
|
1.0
|
NA
|
S:CHL306
|
2.1
|
74.5
|
1.0
|
NC
|
S:CHL306
|
2.1
|
79.4
|
1.0
|
C4D
|
S:CHL306
|
3.0
|
68.3
|
1.0
|
C4A
|
S:CHL306
|
3.0
|
73.7
|
1.0
|
C1B
|
S:CHL306
|
3.0
|
73.0
|
1.0
|
C4B
|
S:CHL306
|
3.1
|
77.2
|
1.0
|
C1C
|
S:CHL306
|
3.1
|
77.0
|
1.0
|
C1D
|
S:CHL306
|
3.1
|
78.0
|
1.0
|
C4C
|
S:CHL306
|
3.1
|
78.1
|
1.0
|
C1A
|
S:CHL306
|
3.2
|
76.8
|
1.0
|
CHC
|
S:CHL306
|
3.4
|
77.4
|
1.0
|
CHD
|
S:CHL306
|
3.4
|
78.2
|
1.0
|
CHB
|
S:CHL306
|
3.4
|
71.6
|
1.0
|
CHA
|
S:CHL306
|
3.5
|
69.3
|
1.0
|
OMC
|
S:CHL305
|
3.9
|
85.2
|
1.0
|
C3D
|
S:CHL306
|
4.3
|
69.6
|
1.0
|
C2B
|
S:CHL306
|
4.3
|
78.6
|
1.0
|
C2D
|
S:CHL306
|
4.3
|
74.3
|
1.0
|
C3B
|
S:CHL306
|
4.4
|
81.3
|
1.0
|
C3A
|
S:CHL306
|
4.4
|
74.6
|
1.0
|
C2C
|
S:CHL306
|
4.4
|
76.5
|
1.0
|
C3C
|
S:CHL306
|
4.4
|
75.5
|
1.0
|
C38
|
S:Q6L316
|
4.4
|
52.6
|
1.0
|
C2A
|
S:CHL306
|
4.5
|
81.3
|
1.0
|
CMC
|
S:CHL305
|
4.5
|
81.1
|
1.0
|
C01
|
T:IWJ321
|
4.6
|
69.4
|
1.0
|
CA
|
S:GLY90
|
4.8
|
88.4
|
1.0
|
C37
|
S:Q6L316
|
4.8
|
62.6
|
1.0
|
CMA
|
S:CHL306
|
4.9
|
81.0
|
1.0
|
C03
|
T:IWJ321
|
5.0
|
68.0
|
1.0
|
CBD
|
S:CHL306
|
5.0
|
71.7
|
1.0
|
|
Magnesium binding site 7 out
of 42 in 8hg3
Go back to
Magnesium Binding Sites List in 8hg3
Magnesium binding site 7 out
of 42 in the Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg307
b:79.6
occ:1.00
|
MG
|
S:CHL307
|
0.0
|
79.6
|
1.0
|
NB
|
S:CHL307
|
2.0
|
73.6
|
1.0
|
ND
|
S:CHL307
|
2.0
|
75.9
|
1.0
|
NA
|
S:CHL307
|
2.1
|
76.0
|
1.0
|
NC
|
S:CHL307
|
2.1
|
78.3
|
1.0
|
CZ
|
S:PHE163
|
2.6
|
93.1
|
1.0
|
C4D
|
S:CHL307
|
3.0
|
76.4
|
1.0
|
C1B
|
S:CHL307
|
3.0
|
74.0
|
1.0
|
CE1
|
S:PHE163
|
3.0
|
93.0
|
1.0
|
C4A
|
S:CHL307
|
3.0
|
74.5
|
1.0
|
C4B
|
S:CHL307
|
3.1
|
75.2
|
1.0
|
C1C
|
S:CHL307
|
3.1
|
79.2
|
1.0
|
C1D
|
S:CHL307
|
3.1
|
75.3
|
1.0
|
C4C
|
S:CHL307
|
3.2
|
78.0
|
1.0
|
C1A
|
S:CHL307
|
3.2
|
75.0
|
1.0
|
CHC
|
S:CHL307
|
3.4
|
78.0
|
1.0
|
CHB
|
S:CHL307
|
3.4
|
74.4
|
1.0
|
CHD
|
S:CHL307
|
3.5
|
81.5
|
1.0
|
CHA
|
S:CHL307
|
3.5
|
78.7
|
1.0
|
CE2
|
S:PHE163
|
3.7
|
89.5
|
1.0
|
CB
|
S:ARG140
|
4.0
|
81.1
|
1.0
|
C3D
|
S:CHL307
|
4.3
|
73.0
|
1.0
|
C2B
|
S:CHL307
|
4.3
|
74.4
|
1.0
|
CA
|
S:ARG140
|
4.3
|
83.8
|
1.0
|
O
|
S:ALA136
|
4.3
|
78.7
|
1.0
|
CD1
|
S:PHE163
|
4.3
|
93.6
|
1.0
|
C3B
|
S:CHL307
|
4.4
|
75.2
|
1.0
|
C2D
|
S:CHL307
|
4.4
|
72.7
|
1.0
|
C3A
|
S:CHL307
|
4.4
|
78.4
|
1.0
|
C2C
|
S:CHL307
|
4.4
|
78.2
|
1.0
|
C3C
|
S:CHL307
|
4.4
|
74.9
|
1.0
|
CG
|
S:ARG140
|
4.4
|
76.1
|
1.0
|
C2A
|
S:CHL307
|
4.5
|
70.6
|
1.0
|
N
|
S:ARG140
|
4.6
|
80.2
|
1.0
|
CD2
|
S:PHE163
|
4.8
|
86.7
|
1.0
|
CMA
|
S:CHL307
|
5.0
|
77.6
|
1.0
|
CBD
|
S:CHL307
|
5.0
|
79.4
|
1.0
|
|
Magnesium binding site 8 out
of 42 in 8hg3
Go back to
Magnesium Binding Sites List in 8hg3
Magnesium binding site 8 out
of 42 in the Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg308
b:79.2
occ:1.00
|
MG
|
S:KC2308
|
0.0
|
79.2
|
1.0
|
ND
|
S:KC2308
|
2.0
|
72.1
|
1.0
|
NB
|
S:KC2308
|
2.0
|
77.3
|
1.0
|
NA
|
S:KC2308
|
2.1
|
70.9
|
1.0
|
NC
|
S:KC2308
|
2.1
|
70.5
|
1.0
|
OE1
|
S:GLU137
|
2.3
|
80.6
|
1.0
|
CD
|
S:GLU137
|
2.8
|
80.0
|
1.0
|
OE2
|
S:GLU137
|
2.8
|
78.8
|
1.0
|
C4D
|
S:KC2308
|
2.9
|
69.3
|
1.0
|
C1B
|
S:KC2308
|
3.0
|
72.8
|
1.0
|
C4B
|
S:KC2308
|
3.1
|
75.7
|
1.0
|
C4A
|
S:KC2308
|
3.1
|
69.4
|
1.0
|
C1C
|
S:KC2308
|
3.1
|
70.1
|
1.0
|
C1D
|
S:KC2308
|
3.1
|
70.8
|
1.0
|
C1A
|
S:KC2308
|
3.2
|
71.9
|
1.0
|
C4C
|
S:KC2308
|
3.2
|
67.6
|
1.0
|
CHB
|
S:KC2308
|
3.4
|
68.5
|
1.0
|
CHC
|
S:KC2308
|
3.4
|
71.5
|
1.0
|
NH2
|
S:ARG140
|
3.5
|
87.9
|
1.0
|
CHA
|
S:KC2308
|
3.5
|
68.2
|
1.0
|
CHD
|
S:KC2308
|
3.5
|
72.0
|
1.0
|
C09
|
S:Q6L321
|
4.1
|
70.2
|
1.0
|
CG
|
S:GLU137
|
4.1
|
84.5
|
1.0
|
CMB
|
S:CLA302
|
4.2
|
79.7
|
1.0
|
C3D
|
S:KC2308
|
4.2
|
69.8
|
1.0
|
C2B
|
S:KC2308
|
4.3
|
75.2
|
1.0
|
C3B
|
S:KC2308
|
4.3
|
73.7
|
1.0
|
C2D
|
S:KC2308
|
4.3
|
69.2
|
1.0
|
C2C
|
S:KC2308
|
4.3
|
71.5
|
1.0
|
C3C
|
S:KC2308
|
4.4
|
64.7
|
1.0
|
C3A
|
S:KC2308
|
4.4
|
69.0
|
1.0
|
C2A
|
S:KC2308
|
4.5
|
73.9
|
1.0
|
CZ
|
S:ARG140
|
4.5
|
87.5
|
1.0
|
NH1
|
S:ARG140
|
4.7
|
87.6
|
1.0
|
CB
|
S:GLU137
|
4.8
|
81.3
|
1.0
|
CBD
|
S:KC2308
|
5.0
|
68.9
|
1.0
|
|
Magnesium binding site 9 out
of 42 in 8hg3
Go back to
Magnesium Binding Sites List in 8hg3
Magnesium binding site 9 out
of 42 in the Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg309
b:78.1
occ:1.00
|
MG
|
S:CLA309
|
0.0
|
78.1
|
1.0
|
ND
|
S:CLA309
|
2.0
|
75.1
|
1.0
|
NB
|
S:CLA309
|
2.0
|
69.8
|
1.0
|
NA
|
S:CLA309
|
2.1
|
71.5
|
1.0
|
NC
|
S:CLA309
|
2.1
|
76.7
|
1.0
|
OE2
|
S:GLU181
|
2.2
|
80.8
|
1.0
|
C4D
|
S:CLA309
|
3.0
|
71.3
|
1.0
|
C1B
|
S:CLA309
|
3.0
|
68.3
|
1.0
|
C4A
|
S:CLA309
|
3.0
|
73.2
|
1.0
|
C4B
|
S:CLA309
|
3.1
|
72.2
|
1.0
|
C1C
|
S:CLA309
|
3.1
|
73.2
|
1.0
|
C4C
|
S:CLA309
|
3.1
|
74.4
|
1.0
|
C1D
|
S:CLA309
|
3.2
|
71.3
|
1.0
|
C1A
|
S:CLA309
|
3.2
|
68.4
|
1.0
|
CD
|
S:GLU181
|
3.2
|
76.6
|
1.0
|
CHB
|
S:CLA309
|
3.4
|
74.1
|
1.0
|
CHC
|
S:CLA309
|
3.5
|
72.6
|
1.0
|
CHA
|
S:CLA309
|
3.5
|
68.2
|
1.0
|
CHD
|
S:CLA309
|
3.5
|
74.7
|
1.0
|
CG
|
S:GLU181
|
3.7
|
61.7
|
1.0
|
O1A
|
S:CLA309
|
3.7
|
73.8
|
0.0
|
NH2
|
S:ARG66
|
4.0
|
76.2
|
1.0
|
NE
|
S:ARG66
|
4.1
|
60.5
|
1.0
|
OE1
|
S:GLU181
|
4.2
|
84.2
|
1.0
|
C3D
|
S:CLA309
|
4.3
|
70.1
|
1.0
|
C2B
|
S:CLA309
|
4.3
|
70.0
|
1.0
|
C3A
|
S:CLA309
|
4.3
|
73.8
|
1.0
|
C3B
|
S:CLA309
|
4.3
|
71.6
|
1.0
|
C2D
|
S:CLA309
|
4.3
|
64.6
|
1.0
|
C2C
|
S:CLA309
|
4.4
|
69.8
|
1.0
|
C3C
|
S:CLA309
|
4.4
|
67.5
|
1.0
|
C2A
|
S:CLA309
|
4.5
|
70.0
|
1.0
|
CZ
|
S:ARG66
|
4.6
|
66.1
|
1.0
|
CGA
|
S:CLA309
|
4.7
|
74.0
|
0.0
|
CB
|
S:GLU181
|
4.7
|
70.7
|
1.0
|
C29
|
S:Q6L315
|
4.8
|
73.9
|
1.0
|
CMA
|
S:CLA309
|
4.8
|
77.8
|
1.0
|
CBD
|
S:CLA309
|
5.0
|
71.2
|
1.0
|
|
Magnesium binding site 10 out
of 42 in 8hg3
Go back to
Magnesium Binding Sites List in 8hg3
Magnesium binding site 10 out
of 42 in the Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of the Lhcp Complex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg310
b:67.6
occ:1.00
|
MG
|
S:CLA310
|
0.0
|
67.6
|
1.0
|
ND
|
S:CLA310
|
2.0
|
67.6
|
1.0
|
NB
|
S:CLA310
|
2.0
|
78.2
|
1.0
|
NC
|
S:CLA310
|
2.1
|
69.5
|
1.0
|
NA
|
S:CLA310
|
2.1
|
69.0
|
1.0
|
OE2
|
S:GLU37
|
2.3
|
85.0
|
1.0
|
C4D
|
S:CLA310
|
2.9
|
69.9
|
1.0
|
CD
|
S:GLU37
|
3.0
|
89.7
|
1.0
|
C1B
|
S:CLA310
|
3.0
|
75.8
|
1.0
|
OE1
|
S:GLU37
|
3.1
|
91.0
|
1.0
|
C4B
|
S:CLA310
|
3.1
|
72.7
|
1.0
|
C1C
|
S:CLA310
|
3.1
|
69.5
|
1.0
|
C4A
|
S:CLA310
|
3.1
|
66.9
|
1.0
|
C4C
|
S:CLA310
|
3.2
|
66.5
|
1.0
|
C1D
|
S:CLA310
|
3.2
|
65.8
|
1.0
|
C1A
|
S:CLA310
|
3.2
|
66.2
|
1.0
|
CHC
|
S:CLA310
|
3.4
|
72.5
|
1.0
|
CHB
|
S:CLA310
|
3.5
|
71.3
|
1.0
|
CHA
|
S:CLA310
|
3.5
|
68.7
|
1.0
|
CHD
|
S:CLA310
|
3.6
|
67.3
|
1.0
|
C3D
|
S:CLA310
|
4.3
|
71.3
|
1.0
|
C2B
|
S:CLA310
|
4.3
|
68.4
|
1.0
|
C3B
|
S:CLA310
|
4.3
|
67.7
|
1.0
|
NZ
|
S:LYS183
|
4.3
|
79.8
|
1.0
|
C2C
|
S:CLA310
|
4.4
|
66.4
|
1.0
|
C2D
|
S:CLA310
|
4.4
|
65.3
|
1.0
|
C3C
|
S:CLA310
|
4.4
|
64.2
|
1.0
|
CD
|
S:LYS183
|
4.4
|
70.6
|
1.0
|
CG
|
S:PRO36
|
4.5
|
81.6
|
1.0
|
C3A
|
S:CLA310
|
4.5
|
61.8
|
1.0
|
CG
|
S:GLU37
|
4.5
|
83.6
|
1.0
|
C2A
|
S:CLA310
|
4.5
|
64.0
|
1.0
|
CD
|
S:PRO36
|
4.8
|
73.1
|
1.0
|
CE
|
S:LYS183
|
4.9
|
73.4
|
1.0
|
CBD
|
S:CLA310
|
4.9
|
69.4
|
1.0
|
C40
|
S:Q6L320
|
5.0
|
57.0
|
1.0
|
|
Reference:
A.Ishii,
J.Shan,
X.Sheng,
E.Kim,
A.Watanabe,
M.Yokono,
C.Noda,
C.Song,
K.Murata,
Z.Liu,
J.Minagawa.
The Photosystem I Supercomplex From A Primordial Green Alga Ostreococcus Tauri Harbors Three Light-Harvesting Complex Trimers. Elife V. 12 2023.
ISSN: ESSN 2050-084X
PubMed: 36951548
DOI: 10.7554/ELIFE.84488
Page generated: Fri Jul 28 00:47:14 2023
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