Magnesium in PDB 8hg5: Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Magnesium Binding Sites:
Magnesium binding site 1 out
of 42 in 8hg5
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Magnesium Binding Sites List in 8hg5
Magnesium binding site 1 out
of 42 in the Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg301
b:97.2
occ:1.00
|
MG
|
P:CLA301
|
0.0
|
97.2
|
1.0
|
NB
|
P:CLA301
|
2.0
|
93.1
|
1.0
|
ND
|
P:CLA301
|
2.0
|
95.3
|
1.0
|
NA
|
P:CLA301
|
2.1
|
92.4
|
1.0
|
NC
|
P:CLA301
|
2.1
|
95.7
|
1.0
|
OE1
|
P:GLU61
|
2.2
|
95.4
|
1.0
|
OE2
|
P:GLU61
|
2.5
|
96.3
|
1.0
|
CD
|
P:GLU61
|
2.5
|
96.3
|
1.0
|
C4D
|
P:CLA301
|
2.9
|
94.4
|
1.0
|
C1B
|
P:CLA301
|
3.0
|
93.4
|
1.0
|
C4B
|
P:CLA301
|
3.0
|
92.3
|
1.0
|
C4A
|
P:CLA301
|
3.0
|
94.6
|
1.0
|
C1C
|
P:CLA301
|
3.1
|
93.3
|
1.0
|
C1A
|
P:CLA301
|
3.1
|
92.1
|
1.0
|
C4C
|
P:CLA301
|
3.2
|
94.1
|
1.0
|
C1D
|
P:CLA301
|
3.2
|
92.6
|
1.0
|
C01
|
P:Q6L316
|
3.3
|
85.4
|
1.0
|
CHC
|
P:CLA301
|
3.4
|
92.6
|
1.0
|
CHB
|
P:CLA301
|
3.4
|
95.7
|
1.0
|
CHA
|
P:CLA301
|
3.5
|
93.3
|
1.0
|
CHD
|
P:CLA301
|
3.6
|
92.0
|
1.0
|
CG
|
P:GLU61
|
3.8
|
96.6
|
1.0
|
NE
|
P:ARG186
|
4.1
|
101.7
|
1.0
|
C2B
|
P:CLA301
|
4.2
|
92.0
|
1.0
|
C3B
|
P:CLA301
|
4.2
|
92.8
|
1.0
|
C3D
|
P:CLA301
|
4.3
|
93.7
|
1.0
|
O1A
|
P:CLA301
|
4.3
|
96.2
|
1.0
|
C3A
|
P:CLA301
|
4.3
|
93.7
|
1.0
|
C2C
|
P:CLA301
|
4.3
|
93.3
|
1.0
|
C2D
|
P:CLA301
|
4.4
|
92.6
|
1.0
|
C3C
|
P:CLA301
|
4.4
|
92.4
|
1.0
|
C2A
|
P:CLA301
|
4.4
|
93.8
|
1.0
|
NH2
|
P:ARG186
|
4.5
|
102.2
|
1.0
|
C02
|
P:Q6L316
|
4.5
|
87.5
|
1.0
|
CB
|
P:GLU61
|
4.5
|
94.3
|
1.0
|
CZ
|
P:ARG186
|
4.6
|
103.2
|
1.0
|
CG
|
P:ARG186
|
4.9
|
101.4
|
1.0
|
C07
|
P:Q6L316
|
4.9
|
88.8
|
1.0
|
CBD
|
P:CLA301
|
4.9
|
94.0
|
1.0
|
CMA
|
P:CLA301
|
4.9
|
92.6
|
1.0
|
CD
|
P:ARG186
|
4.9
|
101.8
|
1.0
|
|
Magnesium binding site 2 out
of 42 in 8hg5
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Magnesium Binding Sites List in 8hg5
Magnesium binding site 2 out
of 42 in the Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg302
b:78.3
occ:1.00
|
MG
|
P:CLA302
|
0.0
|
78.3
|
1.0
|
NB
|
P:CLA302
|
2.0
|
77.1
|
1.0
|
ND
|
P:CLA302
|
2.0
|
77.7
|
1.0
|
NA
|
P:CLA302
|
2.1
|
73.0
|
1.0
|
NC
|
P:CLA302
|
2.1
|
75.2
|
1.0
|
NE2
|
P:HIS64
|
2.2
|
87.1
|
1.0
|
C4D
|
P:CLA302
|
2.9
|
75.2
|
1.0
|
C1B
|
P:CLA302
|
3.0
|
78.0
|
1.0
|
C4B
|
P:CLA302
|
3.1
|
75.0
|
1.0
|
C4A
|
P:CLA302
|
3.1
|
74.4
|
1.0
|
C1C
|
P:CLA302
|
3.1
|
79.1
|
1.0
|
CD2
|
P:HIS64
|
3.1
|
86.5
|
1.0
|
C4C
|
P:CLA302
|
3.1
|
75.0
|
1.0
|
C1A
|
P:CLA302
|
3.1
|
74.4
|
1.0
|
C1D
|
P:CLA302
|
3.2
|
77.6
|
1.0
|
CE1
|
P:HIS64
|
3.3
|
85.6
|
1.0
|
CHC
|
P:CLA302
|
3.4
|
77.3
|
1.0
|
CHB
|
P:CLA302
|
3.4
|
77.9
|
1.0
|
CHA
|
P:CLA302
|
3.5
|
75.7
|
1.0
|
CHD
|
P:CLA302
|
3.5
|
76.8
|
1.0
|
C3D
|
P:CLA302
|
4.3
|
73.5
|
1.0
|
CG
|
P:HIS64
|
4.3
|
84.6
|
1.0
|
C3B
|
P:CLA302
|
4.3
|
76.5
|
1.0
|
C2B
|
P:CLA302
|
4.3
|
77.7
|
1.0
|
ND1
|
P:HIS64
|
4.3
|
84.6
|
1.0
|
C2C
|
P:CLA302
|
4.4
|
79.5
|
1.0
|
C2D
|
P:CLA302
|
4.4
|
77.5
|
1.0
|
C3C
|
P:CLA302
|
4.4
|
77.0
|
1.0
|
C3A
|
P:CLA302
|
4.4
|
76.0
|
1.0
|
C2A
|
P:CLA302
|
4.4
|
74.4
|
1.0
|
CBA
|
P:CLA302
|
4.9
|
81.8
|
1.0
|
CBD
|
P:CLA302
|
4.9
|
75.4
|
1.0
|
CBB
|
P:CLA301
|
5.0
|
91.7
|
1.0
|
|
Magnesium binding site 3 out
of 42 in 8hg5
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Magnesium Binding Sites List in 8hg5
Magnesium binding site 3 out
of 42 in the Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg303
b:106.3
occ:1.00
|
MG
|
P:CLA303
|
0.0
|
106.3
|
1.0
|
NB
|
P:CLA303
|
2.0
|
105.7
|
1.0
|
ND
|
P:CLA303
|
2.0
|
105.3
|
1.0
|
NA
|
P:CLA303
|
2.1
|
106.5
|
1.0
|
NC
|
P:CLA303
|
2.1
|
106.4
|
1.0
|
C4D
|
P:CLA303
|
2.9
|
104.7
|
1.0
|
C1B
|
P:CLA303
|
3.0
|
106.0
|
1.0
|
C4B
|
P:CLA303
|
3.1
|
107.0
|
1.0
|
C4A
|
P:CLA303
|
3.1
|
106.6
|
1.0
|
C1C
|
P:CLA303
|
3.1
|
105.9
|
1.0
|
C4C
|
P:CLA303
|
3.2
|
106.0
|
1.0
|
C1D
|
P:CLA303
|
3.2
|
105.8
|
1.0
|
C1A
|
P:CLA303
|
3.2
|
105.2
|
1.0
|
CHB
|
P:CLA303
|
3.4
|
106.5
|
1.0
|
CHC
|
P:CLA303
|
3.4
|
105.7
|
1.0
|
CHA
|
P:CLA303
|
3.5
|
104.4
|
1.0
|
CHD
|
P:CLA303
|
3.5
|
105.1
|
1.0
|
CA
|
P:GLY74
|
4.0
|
103.7
|
1.0
|
C3D
|
P:CLA303
|
4.2
|
104.8
|
1.0
|
C2B
|
P:CLA303
|
4.3
|
106.8
|
1.0
|
C3B
|
P:CLA303
|
4.3
|
106.8
|
1.0
|
O
|
P:GLY74
|
4.3
|
106.1
|
1.0
|
C2D
|
P:CLA303
|
4.3
|
106.2
|
1.0
|
C2C
|
P:CLA303
|
4.4
|
107.5
|
1.0
|
C3C
|
P:CLA303
|
4.4
|
106.8
|
1.0
|
C3A
|
P:CLA303
|
4.4
|
104.6
|
1.0
|
C2A
|
P:CLA303
|
4.5
|
104.7
|
1.0
|
C
|
P:GLY74
|
4.5
|
103.4
|
1.0
|
C24
|
P:NEX317
|
4.5
|
107.8
|
1.0
|
C38
|
P:NEX317
|
4.7
|
108.1
|
1.0
|
C40
|
P:Q6L316
|
4.7
|
88.1
|
1.0
|
CBD
|
P:CLA303
|
4.9
|
105.7
|
1.0
|
C33
|
P:Q6L316
|
5.0
|
87.2
|
1.0
|
|
Magnesium binding site 4 out
of 42 in 8hg5
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Magnesium Binding Sites List in 8hg5
Magnesium binding site 4 out
of 42 in the Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg304
b:113.0
occ:1.00
|
MG
|
P:CHL304
|
0.0
|
113.0
|
1.0
|
ND
|
P:CHL304
|
2.0
|
114.6
|
1.0
|
NB
|
P:CHL304
|
2.0
|
115.5
|
1.0
|
NA
|
P:CHL304
|
2.1
|
113.7
|
1.0
|
NC
|
P:CHL304
|
2.1
|
114.2
|
1.0
|
O
|
P:LEU112
|
2.2
|
117.2
|
1.0
|
C4D
|
P:CHL304
|
2.9
|
114.2
|
1.0
|
C1B
|
P:CHL304
|
3.0
|
115.0
|
1.0
|
C4A
|
P:CHL304
|
3.0
|
114.3
|
1.0
|
C4B
|
P:CHL304
|
3.1
|
114.4
|
1.0
|
C1C
|
P:CHL304
|
3.1
|
114.8
|
1.0
|
C1D
|
P:CHL304
|
3.1
|
114.2
|
1.0
|
C4C
|
P:CHL304
|
3.1
|
115.0
|
1.0
|
C1A
|
P:CHL304
|
3.1
|
114.4
|
1.0
|
C
|
P:LEU112
|
3.2
|
117.8
|
1.0
|
CHB
|
P:CHL304
|
3.4
|
113.4
|
1.0
|
CHC
|
P:CHL304
|
3.4
|
114.1
|
1.0
|
CHA
|
P:CHL304
|
3.5
|
113.8
|
1.0
|
CHD
|
P:CHL304
|
3.5
|
114.0
|
1.0
|
CA
|
P:LEU112
|
3.9
|
118.1
|
1.0
|
N
|
P:ALA113
|
4.1
|
118.6
|
1.0
|
O
|
P:PRO111
|
4.1
|
117.9
|
1.0
|
C3D
|
P:CHL304
|
4.2
|
114.5
|
1.0
|
C2B
|
P:CHL304
|
4.3
|
115.5
|
1.0
|
C3B
|
P:CHL304
|
4.3
|
114.2
|
1.0
|
C2C
|
P:CHL304
|
4.3
|
115.1
|
1.0
|
C2D
|
P:CHL304
|
4.3
|
114.4
|
1.0
|
C3C
|
P:CHL304
|
4.4
|
115.4
|
1.0
|
C3A
|
P:CHL304
|
4.4
|
115.9
|
1.0
|
CA
|
P:ALA113
|
4.4
|
118.0
|
1.0
|
C2A
|
P:CHL304
|
4.5
|
116.0
|
1.0
|
CB
|
P:LEU112
|
4.8
|
116.5
|
1.0
|
CBD
|
P:CHL304
|
4.9
|
114.9
|
1.0
|
N
|
P:LEU112
|
5.0
|
118.2
|
1.0
|
C
|
P:PRO111
|
5.0
|
118.2
|
1.0
|
|
Magnesium binding site 5 out
of 42 in 8hg5
Go back to
Magnesium Binding Sites List in 8hg5
Magnesium binding site 5 out
of 42 in the Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg305
b:101.3
occ:1.00
|
MG
|
P:CHL305
|
0.0
|
101.3
|
1.0
|
NB
|
P:CHL305
|
2.0
|
99.4
|
1.0
|
ND
|
P:CHL305
|
2.0
|
99.8
|
1.0
|
NC
|
P:CHL305
|
2.1
|
98.0
|
1.0
|
NA
|
P:CHL305
|
2.1
|
99.6
|
1.0
|
C4D
|
P:CHL305
|
2.9
|
100.1
|
1.0
|
C1B
|
P:CHL305
|
3.0
|
100.2
|
1.0
|
C4A
|
P:CHL305
|
3.0
|
101.2
|
1.0
|
C4B
|
P:CHL305
|
3.1
|
98.8
|
1.0
|
C1C
|
P:CHL305
|
3.1
|
97.9
|
1.0
|
C4C
|
P:CHL305
|
3.1
|
99.1
|
1.0
|
C1D
|
P:CHL305
|
3.1
|
100.0
|
1.0
|
C1A
|
P:CHL305
|
3.2
|
99.8
|
1.0
|
CHC
|
P:CHL305
|
3.4
|
98.8
|
1.0
|
CHB
|
P:CHL305
|
3.4
|
101.0
|
1.0
|
CHA
|
P:CHL305
|
3.5
|
100.3
|
1.0
|
CHD
|
P:CHL305
|
3.5
|
100.5
|
1.0
|
C3D
|
P:CHL305
|
4.3
|
100.7
|
1.0
|
CBC
|
P:CHL306
|
4.3
|
87.2
|
1.0
|
C2B
|
P:CHL305
|
4.3
|
100.1
|
1.0
|
C3B
|
P:CHL305
|
4.4
|
100.7
|
1.0
|
C2C
|
P:CHL305
|
4.4
|
99.9
|
1.0
|
C3C
|
P:CHL305
|
4.4
|
99.8
|
1.0
|
C2D
|
P:CHL305
|
4.4
|
100.1
|
1.0
|
C3A
|
P:CHL305
|
4.4
|
102.0
|
1.0
|
C2A
|
P:CHL305
|
4.5
|
100.9
|
1.0
|
CG
|
P:GLU129
|
4.5
|
106.2
|
1.0
|
O1A
|
P:CLA303
|
4.5
|
108.3
|
1.0
|
CB
|
P:GLU129
|
4.7
|
106.3
|
1.0
|
CMC
|
P:CHL306
|
4.7
|
84.4
|
1.0
|
OE1
|
P:GLU129
|
4.9
|
102.3
|
1.0
|
CD
|
P:GLU129
|
4.9
|
105.2
|
1.0
|
CBD
|
P:CHL305
|
4.9
|
101.4
|
1.0
|
|
Magnesium binding site 6 out
of 42 in 8hg5
Go back to
Magnesium Binding Sites List in 8hg5
Magnesium binding site 6 out
of 42 in the Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg306
b:87.4
occ:1.00
|
MG
|
P:CHL306
|
0.0
|
87.4
|
1.0
|
NB
|
P:CHL306
|
2.0
|
86.6
|
1.0
|
ND
|
P:CHL306
|
2.0
|
84.9
|
1.0
|
NA
|
P:CHL306
|
2.1
|
87.4
|
1.0
|
NC
|
P:CHL306
|
2.1
|
84.4
|
1.0
|
C4D
|
P:CHL306
|
2.9
|
84.0
|
1.0
|
C1B
|
P:CHL306
|
3.0
|
85.0
|
1.0
|
C4A
|
P:CHL306
|
3.0
|
84.1
|
1.0
|
C4B
|
P:CHL306
|
3.0
|
84.7
|
1.0
|
C1C
|
P:CHL306
|
3.1
|
84.5
|
1.0
|
C1D
|
P:CHL306
|
3.1
|
83.9
|
1.0
|
C4C
|
P:CHL306
|
3.1
|
86.3
|
1.0
|
C1A
|
P:CHL306
|
3.2
|
86.3
|
1.0
|
OMC
|
P:CHL305
|
3.2
|
101.3
|
1.0
|
CHC
|
P:CHL306
|
3.4
|
84.5
|
1.0
|
CHB
|
P:CHL306
|
3.4
|
83.3
|
1.0
|
CHA
|
P:CHL306
|
3.5
|
85.2
|
1.0
|
CHD
|
P:CHL306
|
3.5
|
84.9
|
1.0
|
CMC
|
P:CHL305
|
3.8
|
101.7
|
1.0
|
C3D
|
P:CHL306
|
4.3
|
83.9
|
1.0
|
C2B
|
P:CHL306
|
4.3
|
84.4
|
1.0
|
C3B
|
P:CHL306
|
4.3
|
84.5
|
1.0
|
C2D
|
P:CHL306
|
4.3
|
84.7
|
1.0
|
C3A
|
P:CHL306
|
4.3
|
82.4
|
1.0
|
C3C
|
P:CHL306
|
4.4
|
87.0
|
1.0
|
C2C
|
P:CHL306
|
4.4
|
85.7
|
1.0
|
C2A
|
P:CHL306
|
4.5
|
83.5
|
1.0
|
C01
|
R:IWJ303
|
4.7
|
67.5
|
1.0
|
C2C
|
P:CHL305
|
4.7
|
99.9
|
1.0
|
C03
|
R:IWJ303
|
4.8
|
66.7
|
1.0
|
CD2
|
Q:LEU243
|
4.8
|
76.7
|
1.0
|
CA
|
P:GLY90
|
4.8
|
97.5
|
1.0
|
CBD
|
P:CHL306
|
5.0
|
85.8
|
1.0
|
CMA
|
P:CHL306
|
5.0
|
85.8
|
1.0
|
C02
|
R:IWJ303
|
5.0
|
65.3
|
1.0
|
|
Magnesium binding site 7 out
of 42 in 8hg5
Go back to
Magnesium Binding Sites List in 8hg5
Magnesium binding site 7 out
of 42 in the Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg307
b:105.2
occ:1.00
|
MG
|
P:CHL307
|
0.0
|
105.2
|
1.0
|
NB
|
P:CHL307
|
2.0
|
107.9
|
1.0
|
ND
|
P:CHL307
|
2.0
|
106.8
|
1.0
|
NC
|
P:CHL307
|
2.1
|
108.2
|
1.0
|
NA
|
P:CHL307
|
2.1
|
107.7
|
1.0
|
C4D
|
P:CHL307
|
3.0
|
107.4
|
1.0
|
C1C
|
P:CHL307
|
3.0
|
107.7
|
1.0
|
C4A
|
P:CHL307
|
3.0
|
108.5
|
1.0
|
C1B
|
P:CHL307
|
3.0
|
107.3
|
1.0
|
C4B
|
P:CHL307
|
3.1
|
107.6
|
1.0
|
C4C
|
P:CHL307
|
3.1
|
108.8
|
1.0
|
C1A
|
P:CHL307
|
3.2
|
107.7
|
1.0
|
C1D
|
P:CHL307
|
3.2
|
108.2
|
1.0
|
CHC
|
P:CHL307
|
3.4
|
107.3
|
1.0
|
CHB
|
P:CHL307
|
3.4
|
108.0
|
1.0
|
CHA
|
P:CHL307
|
3.5
|
108.4
|
1.0
|
CHD
|
P:CHL307
|
3.6
|
108.8
|
1.0
|
CZ
|
P:PHE163
|
3.8
|
118.0
|
1.0
|
CE1
|
P:PHE163
|
3.8
|
118.2
|
1.0
|
O
|
P:ALA136
|
3.9
|
107.1
|
1.0
|
CB
|
P:ARG140
|
4.1
|
104.4
|
1.0
|
C3D
|
P:CHL307
|
4.3
|
107.6
|
1.0
|
C2B
|
P:CHL307
|
4.3
|
107.4
|
1.0
|
C2C
|
P:CHL307
|
4.3
|
107.6
|
1.0
|
C3C
|
P:CHL307
|
4.4
|
107.7
|
1.0
|
C3B
|
P:CHL307
|
4.4
|
107.9
|
1.0
|
C3A
|
P:CHL307
|
4.4
|
107.5
|
1.0
|
C2D
|
P:CHL307
|
4.4
|
107.9
|
1.0
|
C2A
|
P:CHL307
|
4.5
|
107.5
|
1.0
|
C
|
P:ALA136
|
4.6
|
107.7
|
1.0
|
CB
|
P:ALA136
|
4.6
|
107.0
|
1.0
|
CA
|
P:ALA136
|
4.7
|
106.5
|
1.0
|
CA
|
P:ARG140
|
4.7
|
103.8
|
1.0
|
CD
|
P:ARG140
|
4.7
|
104.0
|
1.0
|
CGA
|
P:CHL307
|
4.8
|
107.8
|
1.0
|
N
|
P:ARG140
|
4.8
|
104.1
|
1.0
|
CG
|
P:ARG140
|
4.9
|
104.8
|
1.0
|
CBD
|
P:CHL307
|
4.9
|
109.3
|
1.0
|
CMA
|
P:CHL307
|
5.0
|
108.3
|
1.0
|
|
Magnesium binding site 8 out
of 42 in 8hg5
Go back to
Magnesium Binding Sites List in 8hg5
Magnesium binding site 8 out
of 42 in the Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg308
b:94.7
occ:1.00
|
MG
|
P:KC2308
|
0.0
|
94.7
|
1.0
|
ND
|
P:KC2308
|
2.0
|
91.4
|
1.0
|
NB
|
P:KC2308
|
2.0
|
92.2
|
1.0
|
NA
|
P:KC2308
|
2.1
|
91.2
|
1.0
|
NC
|
P:KC2308
|
2.1
|
91.8
|
1.0
|
OE1
|
P:GLU137
|
2.2
|
101.4
|
1.0
|
CD
|
P:GLU137
|
2.7
|
102.5
|
1.0
|
C4D
|
P:KC2308
|
2.9
|
89.6
|
1.0
|
OE2
|
P:GLU137
|
3.0
|
103.5
|
1.0
|
C4B
|
P:KC2308
|
3.0
|
91.2
|
1.0
|
C1B
|
P:KC2308
|
3.0
|
90.4
|
1.0
|
C1C
|
P:KC2308
|
3.1
|
89.9
|
1.0
|
C4A
|
P:KC2308
|
3.1
|
91.4
|
1.0
|
C1D
|
P:KC2308
|
3.1
|
92.5
|
1.0
|
C1A
|
P:KC2308
|
3.1
|
89.8
|
1.0
|
C4C
|
P:KC2308
|
3.2
|
92.4
|
1.0
|
CHC
|
P:KC2308
|
3.4
|
91.0
|
1.0
|
CHA
|
P:KC2308
|
3.5
|
88.4
|
1.0
|
CHB
|
P:KC2308
|
3.5
|
90.9
|
1.0
|
CHD
|
P:KC2308
|
3.5
|
93.2
|
1.0
|
CG
|
P:GLU137
|
3.8
|
101.1
|
1.0
|
CMB
|
P:CLA302
|
3.9
|
78.1
|
1.0
|
C3D
|
P:KC2308
|
4.2
|
91.1
|
1.0
|
C3B
|
P:KC2308
|
4.3
|
90.6
|
1.0
|
C2B
|
P:KC2308
|
4.3
|
90.5
|
1.0
|
C2C
|
P:KC2308
|
4.3
|
90.1
|
1.0
|
C2D
|
P:KC2308
|
4.3
|
90.7
|
1.0
|
C01
|
P:Q6L319
|
4.4
|
77.5
|
1.0
|
C3C
|
P:KC2308
|
4.4
|
90.3
|
1.0
|
C3A
|
P:KC2308
|
4.4
|
90.0
|
1.0
|
C2A
|
P:KC2308
|
4.4
|
89.4
|
1.0
|
NH2
|
P:ARG140
|
4.5
|
102.5
|
1.0
|
CB
|
P:GLU137
|
4.7
|
103.2
|
1.0
|
CBD
|
P:KC2308
|
4.9
|
88.1
|
1.0
|
|
Magnesium binding site 9 out
of 42 in 8hg5
Go back to
Magnesium Binding Sites List in 8hg5
Magnesium binding site 9 out
of 42 in the Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg309
b:109.8
occ:1.00
|
MG
|
P:CLA309
|
0.0
|
109.8
|
1.0
|
NB
|
P:CLA309
|
2.0
|
107.8
|
1.0
|
ND
|
P:CLA309
|
2.0
|
111.3
|
1.0
|
NA
|
P:CLA309
|
2.1
|
111.7
|
1.0
|
NC
|
P:CLA309
|
2.1
|
109.4
|
1.0
|
OE2
|
P:GLU181
|
2.2
|
108.4
|
1.0
|
C4D
|
P:CLA309
|
3.0
|
110.5
|
1.0
|
C1B
|
P:CLA309
|
3.0
|
109.6
|
1.0
|
C4A
|
P:CLA309
|
3.0
|
111.0
|
1.0
|
C4B
|
P:CLA309
|
3.1
|
109.7
|
1.0
|
C1C
|
P:CLA309
|
3.1
|
109.0
|
1.0
|
C4C
|
P:CLA309
|
3.1
|
109.3
|
1.0
|
C1A
|
P:CLA309
|
3.2
|
110.6
|
1.0
|
C1D
|
P:CLA309
|
3.2
|
110.2
|
1.0
|
NH2
|
P:ARG66
|
3.3
|
104.2
|
1.0
|
CD
|
P:GLU181
|
3.3
|
107.2
|
1.0
|
CHC
|
P:CLA309
|
3.4
|
111.0
|
1.0
|
CHB
|
P:CLA309
|
3.4
|
110.4
|
1.0
|
CHA
|
P:CLA309
|
3.5
|
109.4
|
1.0
|
CHD
|
P:CLA309
|
3.5
|
109.4
|
1.0
|
NE
|
P:ARG66
|
3.6
|
104.3
|
1.0
|
CZ
|
P:ARG66
|
3.9
|
104.0
|
1.0
|
CG
|
P:GLU181
|
4.1
|
107.0
|
1.0
|
O1A
|
P:CLA309
|
4.1
|
112.5
|
1.0
|
OE1
|
P:GLU181
|
4.3
|
106.8
|
1.0
|
C3D
|
P:CLA309
|
4.3
|
109.7
|
1.0
|
C2B
|
P:CLA309
|
4.3
|
109.5
|
1.0
|
C3B
|
P:CLA309
|
4.3
|
109.7
|
1.0
|
C2C
|
P:CLA309
|
4.4
|
108.7
|
1.0
|
C2D
|
P:CLA309
|
4.4
|
109.9
|
1.0
|
C3A
|
P:CLA309
|
4.4
|
109.4
|
1.0
|
C3C
|
P:CLA309
|
4.4
|
109.1
|
1.0
|
C2A
|
P:CLA309
|
4.4
|
110.1
|
1.0
|
C29
|
P:Q6L315
|
4.7
|
105.8
|
1.0
|
CD
|
P:ARG66
|
4.8
|
104.2
|
1.0
|
CMA
|
P:CLA309
|
4.9
|
108.4
|
1.0
|
CBD
|
P:CLA309
|
5.0
|
108.8
|
1.0
|
CB
|
P:GLU181
|
5.0
|
107.8
|
1.0
|
|
Magnesium binding site 10 out
of 42 in 8hg5
Go back to
Magnesium Binding Sites List in 8hg5
Magnesium binding site 10 out
of 42 in the Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of the Prasinophyte-Specific Light-Harvesting Complex (Lhcp)From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg310
b:108.9
occ:1.00
|
MG
|
P:CLA310
|
0.0
|
108.9
|
1.0
|
NB
|
P:CLA310
|
2.0
|
112.1
|
1.0
|
ND
|
P:CLA310
|
2.0
|
110.1
|
1.0
|
NC
|
P:CLA310
|
2.1
|
110.4
|
1.0
|
NA
|
P:CLA310
|
2.1
|
111.0
|
1.0
|
OE2
|
P:GLU37
|
2.1
|
107.8
|
1.0
|
C4D
|
P:CLA310
|
2.9
|
111.0
|
1.0
|
C1B
|
P:CLA310
|
3.0
|
112.1
|
1.0
|
C4B
|
P:CLA310
|
3.0
|
111.7
|
1.0
|
C4A
|
P:CLA310
|
3.1
|
111.4
|
1.0
|
C1C
|
P:CLA310
|
3.1
|
111.2
|
1.0
|
C4C
|
P:CLA310
|
3.2
|
110.9
|
1.0
|
C1D
|
P:CLA310
|
3.2
|
110.4
|
1.0
|
C1A
|
P:CLA310
|
3.2
|
111.5
|
1.0
|
CD
|
P:GLU37
|
3.2
|
107.4
|
1.0
|
CHC
|
P:CLA310
|
3.4
|
110.6
|
1.0
|
CHB
|
P:CLA310
|
3.4
|
112.1
|
1.0
|
CHA
|
P:CLA310
|
3.5
|
111.0
|
1.0
|
CHD
|
P:CLA310
|
3.5
|
110.1
|
1.0
|
CG
|
P:GLU37
|
3.7
|
107.1
|
0.0
|
OE1
|
P:GLU37
|
4.2
|
107.5
|
1.0
|
C2B
|
P:CLA310
|
4.2
|
111.6
|
1.0
|
C3B
|
P:CLA310
|
4.2
|
112.0
|
1.0
|
C3D
|
P:CLA310
|
4.3
|
111.1
|
1.0
|
C2C
|
P:CLA310
|
4.4
|
110.7
|
1.0
|
C2D
|
P:CLA310
|
4.4
|
111.1
|
1.0
|
C3C
|
P:CLA310
|
4.4
|
111.3
|
1.0
|
C3A
|
P:CLA310
|
4.4
|
110.8
|
1.0
|
C2A
|
P:CLA310
|
4.5
|
111.2
|
1.0
|
NZ
|
P:LYS183
|
4.8
|
107.7
|
1.0
|
C37
|
R:Q6L301
|
4.8
|
100.6
|
0.0
|
CBD
|
P:CLA310
|
4.9
|
110.8
|
1.0
|
CMD
|
P:CLA311
|
5.0
|
112.2
|
1.0
|
|
Reference:
A.Ishii,
J.Shan,
X.Sheng,
E.Kim,
A.Watanabe,
M.Yokono,
C.Noda,
C.Song,
K.Murata,
Z.Liu,
J.Minagawa.
The Photosystem I Supercomplex From A Primordial Green Alga Ostreococcus Tauri Harbors Three Light-Harvesting Complex Trimers. Elife V. 12 2023.
ISSN: ESSN 2050-084X
PubMed: 36951548
DOI: 10.7554/ELIFE.84488
Page generated: Fri Jul 28 00:47:15 2023
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