Magnesium in PDB 8hh2: F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp

Enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp

All present enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp (pdb code 8hh2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp, PDB code: 8hh2:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 8hh2

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Magnesium binding site 1 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:70.2
occ:1.00
O1G A:ATP600 2.1 71.3 1.0
OG1 A:THR176 2.1 63.5 1.0
O1B A:ATP600 2.5 71.3 1.0
PG A:ATP600 3.3 71.3 1.0
CB A:THR176 3.4 63.5 1.0
PB A:ATP600 3.6 71.3 1.0
O3B A:ATP600 3.7 71.3 1.0
O2A A:ATP600 4.0 71.3 1.0
CG2 A:THR176 4.0 63.5 1.0
OD2 A:ASP261 4.2 61.5 1.0
O3G A:ATP600 4.2 71.3 1.0
OD1 A:ASP261 4.3 61.5 1.0
CA A:THR176 4.5 63.5 1.0
O2G A:ATP600 4.5 71.3 1.0
N A:THR176 4.5 63.5 1.0
O3A A:ATP600 4.6 71.3 1.0
CG A:ASP261 4.7 61.5 1.0
O2B A:ATP600 4.7 71.3 1.0
NE2 A:GLN200 4.8 58.2 1.0
PA A:ATP600 4.9 71.3 1.0

Magnesium binding site 2 out of 5 in 8hh2

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Magnesium binding site 2 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:62.5
occ:1.00
O2G B:ATP600 2.0 64.9 1.0
OG1 B:THR176 2.0 56.9 1.0
O2B B:ATP600 2.3 64.9 1.0
CB B:THR176 3.2 56.9 1.0
PG B:ATP600 3.3 64.9 1.0
O2A B:ATP600 3.5 64.9 1.0
PB B:ATP600 3.5 64.9 1.0
O3B B:ATP600 3.6 64.9 1.0
CG2 B:THR176 3.9 56.9 1.0
O3G B:ATP600 4.2 64.9 1.0
CA B:THR176 4.4 56.9 1.0
O1G B:ATP600 4.4 64.9 1.0
N B:THR176 4.4 56.9 1.0
O3A B:ATP600 4.4 64.9 1.0
OE1 B:GLN200 4.4 57.7 1.0
OD2 B:ASP261 4.6 53.6 1.0
PA B:ATP600 4.6 64.9 1.0
O1B B:ATP600 4.7 64.9 1.0

Magnesium binding site 3 out of 5 in 8hh2

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Magnesium binding site 3 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:61.1
occ:1.00
OG1 C:THR176 2.0 60.7 1.0
O1G C:ATP602 2.0 64.8 1.0
O2B C:ATP602 2.6 64.8 1.0
CB C:THR176 3.2 60.7 1.0
PG C:ATP602 3.2 64.8 1.0
O3B C:ATP602 3.3 64.8 1.0
PB C:ATP602 3.6 64.8 1.0
CG2 C:THR176 3.9 60.7 1.0
O2A C:ATP602 4.1 64.8 1.0
O2G C:ATP602 4.2 64.8 1.0
O3G C:ATP602 4.3 64.8 1.0
CA C:THR176 4.3 60.7 1.0
N C:THR176 4.4 60.7 1.0
O3A C:ATP602 4.4 64.8 1.0
PA C:ATP602 4.7 64.8 1.0
O1A C:ATP602 4.8 64.8 1.0
O1B C:ATP602 4.8 64.8 1.0
OD2 C:ASP261 4.8 59.9 1.0
NE2 C:GLN200 4.8 58.1 1.0
OD1 C:ASP261 4.9 59.9 1.0

Magnesium binding site 4 out of 5 in 8hh2

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Magnesium binding site 4 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:80.5
occ:1.00
OG1 D:THR165 1.7 73.7 1.0
O1B D:ADP503 2.1 78.0 1.0
CB D:THR165 3.1 73.7 1.0
O3 D:PO4501 3.1 85.8 1.0
PB D:ADP503 3.3 78.0 1.0
O2B D:ADP503 3.7 78.0 1.0
N D:THR165 3.8 73.7 1.0
CG2 D:THR165 4.0 73.7 1.0
CA D:THR165 4.0 73.7 1.0
NH1 D:ARG191 4.0 68.1 1.0
O1A D:ADP503 4.1 78.0 1.0
OE1 D:GLU194 4.2 70.0 1.0
OE2 D:GLU194 4.3 70.0 1.0
O3B D:ADP503 4.3 78.0 1.0
O3A D:ADP503 4.4 78.0 1.0
OE1 D:GLU190 4.4 68.5 1.0
PA D:ADP503 4.5 78.0 1.0
O2A D:ADP503 4.5 78.0 1.0
P D:PO4501 4.5 85.8 1.0
CD D:GLU194 4.6 70.0 1.0
O4 D:PO4501 4.7 85.8 1.0
C D:LYS164 4.9 72.5 1.0
CB D:LYS164 5.0 72.5 1.0
NZ D:LYS164 5.0 72.5 1.0

Magnesium binding site 5 out of 5 in 8hh2

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Magnesium binding site 5 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F1 Domain of FOF1-Atpase From Bacillus PS3,Post-Hyd,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:55.8
occ:1.00
OG1 F:THR165 2.0 53.3 1.0
O3G F:ATP602 2.1 57.1 1.0
O2B F:ATP602 2.2 57.1 1.0
OE2 F:GLU190 2.8 56.5 1.0
CB F:THR165 3.4 53.3 1.0
PG F:ATP602 3.4 57.1 1.0
PB F:ATP602 3.5 57.1 1.0
O3B F:ATP602 3.6 57.1 1.0
NH1 F:ARG191 3.8 54.5 1.0
OE1 F:GLU194 3.8 59.3 1.0
CD F:GLU190 3.9 56.5 1.0
OE2 F:GLU194 4.0 59.3 1.0
CG2 F:THR165 4.1 53.3 1.0
O2G F:ATP602 4.2 57.1 1.0
N F:THR165 4.3 53.3 1.0
CA F:THR165 4.3 53.3 1.0
CD F:GLU194 4.3 59.3 1.0
O1A F:ATP602 4.4 57.1 1.0
CG F:GLU190 4.4 56.5 1.0
O3A F:ATP602 4.5 57.1 1.0
O1G F:ATP602 4.5 57.1 1.0
O1B F:ATP602 4.5 57.1 1.0
PA F:ATP602 4.8 57.1 1.0
NH1 B:ARG365 4.9 55.3 1.0
OD1 F:ASP252 4.9 54.3 1.0
OE1 F:GLU190 4.9 56.5 1.0

Reference:

A.Nakano, K.Yokoyama, J.Kishikawa, K.Mitsuoka. Rotation Mechanism of Atp Synthases Driven By Atp Hydrolysis To Be Published.
Page generated: Fri Jul 28 00:47:17 2023

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