Magnesium in PDB 8hjv: Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Other elements in 8hjv:
The structure of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 48 in 8hjv
Go back to
Magnesium Binding Sites List in 8hjv
Magnesium binding site 1 out
of 48 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
0:Mg101
b:65.8
occ:1.00
|
MG
|
0:BCL101
|
0.0
|
65.8
|
1.0
|
ND
|
0:BCL101
|
1.9
|
65.8
|
1.0
|
NB
|
0:BCL101
|
2.0
|
65.8
|
1.0
|
NC
|
0:BCL101
|
2.1
|
65.8
|
1.0
|
NA
|
0:BCL101
|
2.1
|
65.8
|
1.0
|
NE2
|
0:HIS26
|
2.3
|
56.4
|
1.0
|
C4D
|
0:BCL101
|
2.8
|
65.8
|
1.0
|
C1B
|
0:BCL101
|
2.9
|
65.8
|
1.0
|
C4B
|
0:BCL101
|
3.0
|
65.8
|
1.0
|
C1C
|
0:BCL101
|
3.0
|
65.8
|
1.0
|
C4A
|
0:BCL101
|
3.1
|
65.8
|
1.0
|
C1D
|
0:BCL101
|
3.1
|
65.8
|
1.0
|
C1A
|
0:BCL101
|
3.1
|
65.8
|
1.0
|
CE1
|
0:HIS26
|
3.1
|
56.4
|
1.0
|
C4C
|
0:BCL101
|
3.1
|
65.8
|
1.0
|
CHA
|
0:BCL101
|
3.3
|
65.8
|
1.0
|
CHB
|
0:BCL101
|
3.3
|
65.8
|
1.0
|
CHC
|
0:BCL101
|
3.4
|
65.8
|
1.0
|
CD2
|
0:HIS26
|
3.5
|
56.4
|
1.0
|
CHD
|
0:BCL101
|
3.5
|
65.8
|
1.0
|
C3D
|
0:BCL101
|
4.1
|
65.8
|
1.0
|
C2B
|
0:BCL101
|
4.1
|
65.8
|
1.0
|
C3B
|
0:BCL101
|
4.1
|
65.8
|
1.0
|
C2D
|
0:BCL101
|
4.3
|
65.8
|
1.0
|
ND1
|
0:HIS26
|
4.3
|
56.4
|
1.0
|
C3A
|
0:BCL101
|
4.3
|
65.8
|
1.0
|
C2C
|
0:BCL101
|
4.4
|
65.8
|
1.0
|
C3C
|
0:BCL101
|
4.4
|
65.8
|
1.0
|
C2A
|
0:BCL101
|
4.4
|
65.8
|
1.0
|
CG
|
0:HIS26
|
4.5
|
56.4
|
1.0
|
CMA
|
0:BCL101
|
4.6
|
65.8
|
1.0
|
CBD
|
0:BCL101
|
4.8
|
65.8
|
1.0
|
|
Magnesium binding site 2 out
of 48 in 8hjv
Go back to
Magnesium Binding Sites List in 8hjv
Magnesium binding site 2 out
of 48 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
0:Mg102
b:46.5
occ:1.00
|
MG
|
0:BCL102
|
0.0
|
46.5
|
1.0
|
ND
|
0:BCL102
|
1.9
|
46.5
|
1.0
|
NB
|
0:BCL102
|
2.0
|
46.5
|
1.0
|
NC
|
0:BCL102
|
2.1
|
46.5
|
1.0
|
NA
|
0:BCL102
|
2.1
|
46.5
|
1.0
|
NE2
|
0:HIS44
|
2.3
|
48.8
|
1.0
|
C4D
|
0:BCL102
|
2.8
|
46.5
|
1.0
|
C1B
|
0:BCL102
|
2.9
|
46.5
|
1.0
|
C4B
|
0:BCL102
|
3.0
|
46.5
|
1.0
|
C1C
|
0:BCL102
|
3.0
|
46.5
|
1.0
|
C4A
|
0:BCL102
|
3.0
|
46.5
|
1.0
|
C1D
|
0:BCL102
|
3.1
|
46.5
|
1.0
|
C1A
|
0:BCL102
|
3.1
|
46.5
|
1.0
|
C4C
|
0:BCL102
|
3.1
|
46.5
|
1.0
|
CE1
|
0:HIS44
|
3.2
|
48.8
|
1.0
|
CD2
|
0:HIS44
|
3.3
|
48.8
|
1.0
|
CHB
|
0:BCL102
|
3.3
|
46.5
|
1.0
|
CHA
|
0:BCL102
|
3.4
|
46.5
|
1.0
|
CHC
|
0:BCL102
|
3.4
|
46.5
|
1.0
|
CHD
|
0:BCL102
|
3.5
|
46.5
|
1.0
|
C3D
|
0:BCL102
|
4.1
|
46.5
|
1.0
|
C2B
|
0:BCL102
|
4.1
|
46.5
|
1.0
|
C3B
|
0:BCL102
|
4.1
|
46.5
|
1.0
|
CMB
|
7:BCL101
|
4.2
|
46.0
|
1.0
|
C2D
|
0:BCL102
|
4.2
|
46.5
|
1.0
|
ND1
|
0:HIS44
|
4.3
|
48.8
|
1.0
|
C2C
|
0:BCL102
|
4.3
|
46.5
|
1.0
|
C3C
|
0:BCL102
|
4.4
|
46.5
|
1.0
|
C3A
|
0:BCL102
|
4.4
|
46.5
|
1.0
|
CG
|
0:HIS44
|
4.4
|
48.8
|
1.0
|
C2A
|
0:BCL102
|
4.5
|
46.5
|
1.0
|
CAC
|
0:BCL102
|
4.7
|
46.5
|
1.0
|
CBD
|
0:BCL102
|
4.9
|
46.5
|
1.0
|
CAB
|
7:BCL101
|
4.9
|
46.0
|
1.0
|
|
Magnesium binding site 3 out
of 48 in 8hjv
Go back to
Magnesium Binding Sites List in 8hjv
Magnesium binding site 3 out
of 48 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg101
b:60.0
occ:1.00
|
MG
|
1:BCL101
|
0.0
|
60.0
|
1.0
|
ND
|
1:BCL101
|
1.9
|
60.0
|
1.0
|
NB
|
1:BCL101
|
2.0
|
60.0
|
1.0
|
NE2
|
1:HIS27
|
2.0
|
49.9
|
1.0
|
NC
|
1:BCL101
|
2.1
|
60.0
|
1.0
|
NA
|
1:BCL101
|
2.1
|
60.0
|
1.0
|
CE1
|
1:HIS27
|
2.6
|
49.9
|
1.0
|
C4D
|
1:BCL101
|
2.8
|
60.0
|
1.0
|
C1B
|
1:BCL101
|
2.9
|
60.0
|
1.0
|
C4B
|
1:BCL101
|
3.0
|
60.0
|
1.0
|
C1C
|
1:BCL101
|
3.0
|
60.0
|
1.0
|
C4A
|
1:BCL101
|
3.1
|
60.0
|
1.0
|
C1D
|
1:BCL101
|
3.1
|
60.0
|
1.0
|
C1A
|
1:BCL101
|
3.1
|
60.0
|
1.0
|
C4C
|
1:BCL101
|
3.1
|
60.0
|
1.0
|
CD2
|
1:HIS27
|
3.3
|
49.9
|
1.0
|
CHA
|
1:BCL101
|
3.3
|
60.0
|
1.0
|
CHB
|
1:BCL101
|
3.3
|
60.0
|
1.0
|
CHC
|
1:BCL101
|
3.4
|
60.0
|
1.0
|
CHD
|
1:BCL101
|
3.5
|
60.0
|
1.0
|
ND1
|
1:HIS27
|
3.8
|
49.9
|
1.0
|
C3D
|
1:BCL101
|
4.1
|
60.0
|
1.0
|
C2B
|
1:BCL101
|
4.1
|
60.0
|
1.0
|
C3B
|
1:BCL101
|
4.1
|
60.0
|
1.0
|
CG
|
1:HIS27
|
4.2
|
49.9
|
1.0
|
C2D
|
1:BCL101
|
4.2
|
60.0
|
1.0
|
C2C
|
1:BCL101
|
4.4
|
60.0
|
1.0
|
CMD
|
2:BCL101
|
4.4
|
66.2
|
1.0
|
C3C
|
1:BCL101
|
4.4
|
60.0
|
1.0
|
C2A
|
1:BCL101
|
4.4
|
60.0
|
1.0
|
C3A
|
1:BCL101
|
4.4
|
60.0
|
1.0
|
CBD
|
1:BCL101
|
4.8
|
60.0
|
1.0
|
CMA
|
1:BCL101
|
5.0
|
60.0
|
1.0
|
OBD
|
2:BCL101
|
5.0
|
66.2
|
1.0
|
OBB
|
4:BCL101
|
5.0
|
54.9
|
1.0
|
|
Magnesium binding site 4 out
of 48 in 8hjv
Go back to
Magnesium Binding Sites List in 8hjv
Magnesium binding site 4 out
of 48 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Mg101
b:66.2
occ:1.00
|
MG
|
2:BCL101
|
0.0
|
66.2
|
1.0
|
ND
|
2:BCL101
|
1.9
|
66.2
|
1.0
|
NB
|
2:BCL101
|
1.9
|
66.2
|
1.0
|
NC
|
2:BCL101
|
2.1
|
66.2
|
1.0
|
NA
|
2:BCL101
|
2.1
|
66.2
|
1.0
|
NE2
|
2:HIS44
|
2.4
|
60.5
|
1.0
|
C4D
|
2:BCL101
|
2.8
|
66.2
|
1.0
|
C1B
|
2:BCL101
|
2.9
|
66.2
|
1.0
|
C4B
|
2:BCL101
|
3.0
|
66.2
|
1.0
|
C1C
|
2:BCL101
|
3.0
|
66.2
|
1.0
|
C4A
|
2:BCL101
|
3.0
|
66.2
|
1.0
|
C1D
|
2:BCL101
|
3.1
|
66.2
|
1.0
|
C1A
|
2:BCL101
|
3.1
|
66.2
|
1.0
|
C4C
|
2:BCL101
|
3.1
|
66.2
|
1.0
|
CE1
|
2:HIS44
|
3.2
|
60.5
|
1.0
|
CHB
|
2:BCL101
|
3.3
|
66.2
|
1.0
|
CHA
|
2:BCL101
|
3.3
|
66.2
|
1.0
|
CHC
|
2:BCL101
|
3.4
|
66.2
|
1.0
|
CD2
|
2:HIS44
|
3.4
|
60.5
|
1.0
|
CHD
|
2:BCL101
|
3.5
|
66.2
|
1.0
|
CD1
|
C:ILE42
|
4.0
|
56.9
|
1.0
|
C3D
|
2:BCL101
|
4.0
|
66.2
|
1.0
|
C2B
|
2:BCL101
|
4.1
|
66.2
|
1.0
|
C3B
|
2:BCL101
|
4.1
|
66.2
|
1.0
|
C2D
|
2:BCL101
|
4.2
|
66.2
|
1.0
|
C2C
|
2:BCL101
|
4.3
|
66.2
|
1.0
|
ND1
|
2:HIS44
|
4.4
|
60.5
|
1.0
|
C3A
|
2:BCL101
|
4.4
|
66.2
|
1.0
|
C3C
|
2:BCL101
|
4.4
|
66.2
|
1.0
|
C2A
|
2:BCL101
|
4.4
|
66.2
|
1.0
|
CG
|
2:HIS44
|
4.5
|
60.5
|
1.0
|
CAC
|
2:BCL101
|
4.8
|
66.2
|
1.0
|
CBD
|
2:BCL101
|
4.8
|
66.2
|
1.0
|
|
Magnesium binding site 5 out
of 48 in 8hjv
Go back to
Magnesium Binding Sites List in 8hjv
Magnesium binding site 5 out
of 48 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Mg102
b:124.0
occ:1.00
|
MG
|
2:BCL102
|
0.0
|
124.0
|
1.0
|
ND
|
2:BCL102
|
1.9
|
124.0
|
1.0
|
NB
|
2:BCL102
|
2.0
|
124.0
|
1.0
|
NC
|
2:BCL102
|
2.1
|
124.0
|
1.0
|
NA
|
2:BCL102
|
2.1
|
124.0
|
1.0
|
NE2
|
2:HIS26
|
2.4
|
101.8
|
1.0
|
C4D
|
2:BCL102
|
2.8
|
124.0
|
1.0
|
C1B
|
2:BCL102
|
2.9
|
124.0
|
1.0
|
C4B
|
2:BCL102
|
3.0
|
124.0
|
1.0
|
C1C
|
2:BCL102
|
3.0
|
124.0
|
1.0
|
C4A
|
2:BCL102
|
3.1
|
124.0
|
1.0
|
C1D
|
2:BCL102
|
3.1
|
124.0
|
1.0
|
C1A
|
2:BCL102
|
3.1
|
124.0
|
1.0
|
C4C
|
2:BCL102
|
3.1
|
124.0
|
1.0
|
CE1
|
2:HIS26
|
3.1
|
101.8
|
1.0
|
CHA
|
2:BCL102
|
3.3
|
124.0
|
1.0
|
CHB
|
2:BCL102
|
3.3
|
124.0
|
1.0
|
CHC
|
2:BCL102
|
3.4
|
124.0
|
1.0
|
CD2
|
2:HIS26
|
3.5
|
101.8
|
1.0
|
CHD
|
2:BCL102
|
3.5
|
124.0
|
1.0
|
C3D
|
2:BCL102
|
4.1
|
124.0
|
1.0
|
C2B
|
2:BCL102
|
4.1
|
124.0
|
1.0
|
C3B
|
2:BCL102
|
4.1
|
124.0
|
1.0
|
C2D
|
2:BCL102
|
4.3
|
124.0
|
1.0
|
C3A
|
2:BCL102
|
4.3
|
124.0
|
1.0
|
ND1
|
2:HIS26
|
4.3
|
101.8
|
1.0
|
C2C
|
2:BCL102
|
4.4
|
124.0
|
1.0
|
C3C
|
2:BCL102
|
4.4
|
124.0
|
1.0
|
C2A
|
2:BCL102
|
4.4
|
124.0
|
1.0
|
CG
|
2:HIS26
|
4.5
|
101.8
|
1.0
|
CMA
|
2:BCL102
|
4.6
|
124.0
|
1.0
|
CBD
|
2:BCL102
|
4.8
|
124.0
|
1.0
|
|
Magnesium binding site 6 out
of 48 in 8hjv
Go back to
Magnesium Binding Sites List in 8hjv
Magnesium binding site 6 out
of 48 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg101
b:53.2
occ:1.00
|
MG
|
3:BCL101
|
0.0
|
53.2
|
1.0
|
ND
|
3:BCL101
|
1.9
|
53.2
|
1.0
|
NB
|
3:BCL101
|
2.0
|
53.2
|
1.0
|
NC
|
3:BCL101
|
2.1
|
53.2
|
1.0
|
NE2
|
3:HIS27
|
2.1
|
47.7
|
1.0
|
NA
|
3:BCL101
|
2.1
|
53.2
|
1.0
|
CE1
|
3:HIS27
|
2.7
|
47.7
|
1.0
|
C4D
|
3:BCL101
|
2.8
|
53.2
|
1.0
|
C1B
|
3:BCL101
|
2.9
|
53.2
|
1.0
|
C4B
|
3:BCL101
|
3.0
|
53.2
|
1.0
|
C1C
|
3:BCL101
|
3.0
|
53.2
|
1.0
|
C4A
|
3:BCL101
|
3.1
|
53.2
|
1.0
|
C1D
|
3:BCL101
|
3.1
|
53.2
|
1.0
|
C1A
|
3:BCL101
|
3.1
|
53.2
|
1.0
|
C4C
|
3:BCL101
|
3.1
|
53.2
|
1.0
|
CHA
|
3:BCL101
|
3.3
|
53.2
|
1.0
|
CD2
|
3:HIS27
|
3.3
|
47.7
|
1.0
|
CHB
|
3:BCL101
|
3.3
|
53.2
|
1.0
|
CHC
|
3:BCL101
|
3.4
|
53.2
|
1.0
|
CHD
|
3:BCL101
|
3.5
|
53.2
|
1.0
|
ND1
|
3:HIS27
|
3.9
|
47.7
|
1.0
|
C3D
|
3:BCL101
|
4.1
|
53.2
|
1.0
|
C2B
|
3:BCL101
|
4.1
|
53.2
|
1.0
|
C3B
|
3:BCL101
|
4.1
|
53.2
|
1.0
|
C2D
|
3:BCL101
|
4.2
|
53.2
|
1.0
|
CG
|
3:HIS27
|
4.3
|
47.7
|
1.0
|
C2C
|
3:BCL101
|
4.4
|
53.2
|
1.0
|
C3C
|
3:BCL101
|
4.4
|
53.2
|
1.0
|
C2A
|
3:BCL101
|
4.4
|
53.2
|
1.0
|
C3A
|
3:BCL101
|
4.4
|
53.2
|
1.0
|
OBB
|
6:BCL101
|
4.7
|
52.9
|
1.0
|
CBD
|
3:BCL101
|
4.8
|
53.2
|
1.0
|
CMD
|
4:BCL101
|
4.8
|
54.9
|
1.0
|
CMA
|
3:BCL101
|
5.0
|
53.2
|
1.0
|
|
Magnesium binding site 7 out
of 48 in 8hjv
Go back to
Magnesium Binding Sites List in 8hjv
Magnesium binding site 7 out
of 48 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
4:Mg101
b:54.9
occ:1.00
|
MG
|
4:BCL101
|
0.0
|
54.9
|
1.0
|
ND
|
4:BCL101
|
1.9
|
54.9
|
1.0
|
NB
|
4:BCL101
|
2.0
|
54.9
|
1.0
|
NC
|
4:BCL101
|
2.1
|
54.9
|
1.0
|
NA
|
4:BCL101
|
2.1
|
54.9
|
1.0
|
NE2
|
4:HIS44
|
2.2
|
53.5
|
1.0
|
C4D
|
4:BCL101
|
2.8
|
54.9
|
1.0
|
C1B
|
4:BCL101
|
2.9
|
54.9
|
1.0
|
CE1
|
4:HIS44
|
2.9
|
53.5
|
1.0
|
C4B
|
4:BCL101
|
3.0
|
54.9
|
1.0
|
C1C
|
4:BCL101
|
3.0
|
54.9
|
1.0
|
C4A
|
4:BCL101
|
3.0
|
54.9
|
1.0
|
C1D
|
4:BCL101
|
3.1
|
54.9
|
1.0
|
C1A
|
4:BCL101
|
3.1
|
54.9
|
1.0
|
C4C
|
4:BCL101
|
3.1
|
54.9
|
1.0
|
CHB
|
4:BCL101
|
3.3
|
54.9
|
1.0
|
CHA
|
4:BCL101
|
3.4
|
54.9
|
1.0
|
CD2
|
4:HIS44
|
3.4
|
53.5
|
1.0
|
CHC
|
4:BCL101
|
3.4
|
54.9
|
1.0
|
CHD
|
4:BCL101
|
3.5
|
54.9
|
1.0
|
C3D
|
4:BCL101
|
4.1
|
54.9
|
1.0
|
C2B
|
4:BCL101
|
4.1
|
54.9
|
1.0
|
C3B
|
4:BCL101
|
4.1
|
54.9
|
1.0
|
ND1
|
4:HIS44
|
4.2
|
53.5
|
1.0
|
C2D
|
4:BCL101
|
4.2
|
54.9
|
1.0
|
C2C
|
4:BCL101
|
4.3
|
54.9
|
1.0
|
C3C
|
4:BCL101
|
4.4
|
54.9
|
1.0
|
CG
|
4:HIS44
|
4.4
|
53.5
|
1.0
|
C3A
|
4:BCL101
|
4.4
|
54.9
|
1.0
|
C2A
|
4:BCL101
|
4.4
|
54.9
|
1.0
|
CMB
|
1:BCL101
|
4.5
|
60.0
|
1.0
|
CAC
|
4:BCL101
|
4.7
|
54.9
|
1.0
|
CBD
|
4:BCL101
|
4.9
|
54.9
|
1.0
|
CAB
|
1:BCL101
|
5.0
|
60.0
|
1.0
|
|
Magnesium binding site 8 out
of 48 in 8hjv
Go back to
Magnesium Binding Sites List in 8hjv
Magnesium binding site 8 out
of 48 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
4:Mg102
b:86.3
occ:1.00
|
MG
|
4:BCL102
|
0.0
|
86.3
|
1.0
|
ND
|
4:BCL102
|
1.9
|
86.3
|
1.0
|
NB
|
4:BCL102
|
2.0
|
86.3
|
1.0
|
NC
|
4:BCL102
|
2.1
|
86.3
|
1.0
|
NA
|
4:BCL102
|
2.1
|
86.3
|
1.0
|
NE2
|
4:HIS26
|
2.4
|
76.9
|
1.0
|
C4D
|
4:BCL102
|
2.8
|
86.3
|
1.0
|
CE1
|
4:HIS26
|
2.9
|
76.9
|
1.0
|
C1B
|
4:BCL102
|
2.9
|
86.3
|
1.0
|
C4B
|
4:BCL102
|
3.0
|
86.3
|
1.0
|
C1C
|
4:BCL102
|
3.0
|
86.3
|
1.0
|
C4A
|
4:BCL102
|
3.1
|
86.3
|
1.0
|
C1D
|
4:BCL102
|
3.1
|
86.3
|
1.0
|
C1A
|
4:BCL102
|
3.1
|
86.3
|
1.0
|
C4C
|
4:BCL102
|
3.1
|
86.3
|
1.0
|
CHA
|
4:BCL102
|
3.3
|
86.3
|
1.0
|
CHB
|
4:BCL102
|
3.4
|
86.3
|
1.0
|
CHC
|
4:BCL102
|
3.4
|
86.3
|
1.0
|
CHD
|
4:BCL102
|
3.5
|
86.3
|
1.0
|
CD2
|
4:HIS26
|
3.6
|
76.9
|
1.0
|
C3D
|
4:BCL102
|
4.1
|
86.3
|
1.0
|
C2B
|
4:BCL102
|
4.1
|
86.3
|
1.0
|
C3B
|
4:BCL102
|
4.1
|
86.3
|
1.0
|
ND1
|
4:HIS26
|
4.2
|
76.9
|
1.0
|
C2D
|
4:BCL102
|
4.3
|
86.3
|
1.0
|
C3A
|
4:BCL102
|
4.3
|
86.3
|
1.0
|
C2C
|
4:BCL102
|
4.4
|
86.3
|
1.0
|
C3C
|
4:BCL102
|
4.4
|
86.3
|
1.0
|
C2A
|
4:BCL102
|
4.4
|
86.3
|
1.0
|
CG
|
4:HIS26
|
4.5
|
76.9
|
1.0
|
CMA
|
4:BCL102
|
4.6
|
86.3
|
1.0
|
CBD
|
4:BCL102
|
4.8
|
86.3
|
1.0
|
|
Magnesium binding site 9 out
of 48 in 8hjv
Go back to
Magnesium Binding Sites List in 8hjv
Magnesium binding site 9 out
of 48 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
5:Mg101
b:46.7
occ:1.00
|
MG
|
5:BCL101
|
0.0
|
46.7
|
1.0
|
ND
|
5:BCL101
|
1.9
|
46.7
|
1.0
|
NB
|
5:BCL101
|
2.0
|
46.7
|
1.0
|
NE2
|
5:HIS27
|
2.0
|
42.3
|
1.0
|
NC
|
5:BCL101
|
2.1
|
46.7
|
1.0
|
NA
|
5:BCL101
|
2.1
|
46.7
|
1.0
|
CE1
|
5:HIS27
|
2.6
|
42.3
|
1.0
|
C4D
|
5:BCL101
|
2.8
|
46.7
|
1.0
|
C1B
|
5:BCL101
|
2.9
|
46.7
|
1.0
|
C4B
|
5:BCL101
|
3.0
|
46.7
|
1.0
|
C1C
|
5:BCL101
|
3.0
|
46.7
|
1.0
|
C4A
|
5:BCL101
|
3.1
|
46.7
|
1.0
|
C1D
|
5:BCL101
|
3.1
|
46.7
|
1.0
|
C1A
|
5:BCL101
|
3.1
|
46.7
|
1.0
|
C4C
|
5:BCL101
|
3.1
|
46.7
|
1.0
|
CD2
|
5:HIS27
|
3.3
|
42.3
|
1.0
|
CHA
|
5:BCL101
|
3.3
|
46.7
|
1.0
|
CHB
|
5:BCL101
|
3.3
|
46.7
|
1.0
|
CHC
|
5:BCL101
|
3.4
|
46.7
|
1.0
|
CHD
|
5:BCL101
|
3.5
|
46.7
|
1.0
|
ND1
|
5:HIS27
|
3.8
|
42.3
|
1.0
|
C3D
|
5:BCL101
|
4.1
|
46.7
|
1.0
|
C2B
|
5:BCL101
|
4.1
|
46.7
|
1.0
|
C3B
|
5:BCL101
|
4.1
|
46.7
|
1.0
|
CG
|
5:HIS27
|
4.2
|
42.3
|
1.0
|
C2D
|
5:BCL101
|
4.3
|
46.7
|
1.0
|
C2C
|
5:BCL101
|
4.4
|
46.7
|
1.0
|
C3C
|
5:BCL101
|
4.4
|
46.7
|
1.0
|
C2A
|
5:BCL101
|
4.4
|
46.7
|
1.0
|
C3A
|
5:BCL101
|
4.4
|
46.7
|
1.0
|
OBB
|
8:BCL101
|
4.6
|
47.6
|
1.0
|
CBD
|
5:BCL101
|
4.8
|
46.7
|
1.0
|
CMD
|
6:BCL101
|
4.9
|
52.9
|
1.0
|
CMA
|
5:BCL101
|
5.0
|
46.7
|
1.0
|
|
Magnesium binding site 10 out
of 48 in 8hjv
Go back to
Magnesium Binding Sites List in 8hjv
Magnesium binding site 10 out
of 48 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
6:Mg101
b:52.9
occ:1.00
|
MG
|
6:BCL101
|
0.0
|
52.9
|
1.0
|
ND
|
6:BCL101
|
1.9
|
52.9
|
1.0
|
NB
|
6:BCL101
|
2.0
|
52.9
|
1.0
|
NC
|
6:BCL101
|
2.1
|
52.9
|
1.0
|
NA
|
6:BCL101
|
2.1
|
52.9
|
1.0
|
NE2
|
6:HIS44
|
2.3
|
53.7
|
1.0
|
C4D
|
6:BCL101
|
2.8
|
52.9
|
1.0
|
C1B
|
6:BCL101
|
2.9
|
52.9
|
1.0
|
C4B
|
6:BCL101
|
3.0
|
52.9
|
1.0
|
C1C
|
6:BCL101
|
3.0
|
52.9
|
1.0
|
C4A
|
6:BCL101
|
3.0
|
52.9
|
1.0
|
C1D
|
6:BCL101
|
3.1
|
52.9
|
1.0
|
C1A
|
6:BCL101
|
3.1
|
52.9
|
1.0
|
C4C
|
6:BCL101
|
3.1
|
52.9
|
1.0
|
CD2
|
6:HIS44
|
3.2
|
53.7
|
1.0
|
CHB
|
6:BCL101
|
3.3
|
52.9
|
1.0
|
CE1
|
6:HIS44
|
3.4
|
53.7
|
1.0
|
CHA
|
6:BCL101
|
3.4
|
52.9
|
1.0
|
CHC
|
6:BCL101
|
3.4
|
52.9
|
1.0
|
CHD
|
6:BCL101
|
3.5
|
52.9
|
1.0
|
C3D
|
6:BCL101
|
4.1
|
52.9
|
1.0
|
C2B
|
6:BCL101
|
4.1
|
52.9
|
1.0
|
C3B
|
6:BCL101
|
4.1
|
52.9
|
1.0
|
C2D
|
6:BCL101
|
4.2
|
52.9
|
1.0
|
CMB
|
3:BCL101
|
4.3
|
53.2
|
1.0
|
C2C
|
6:BCL101
|
4.3
|
52.9
|
1.0
|
CG
|
6:HIS44
|
4.3
|
53.7
|
1.0
|
C3C
|
6:BCL101
|
4.4
|
52.9
|
1.0
|
ND1
|
6:HIS44
|
4.4
|
53.7
|
1.0
|
C3A
|
6:BCL101
|
4.4
|
52.9
|
1.0
|
C2A
|
6:BCL101
|
4.4
|
52.9
|
1.0
|
CAC
|
6:BCL101
|
4.7
|
52.9
|
1.0
|
CAB
|
3:BCL101
|
4.8
|
53.2
|
1.0
|
CBD
|
6:BCL101
|
4.9
|
52.9
|
1.0
|
|
Reference:
X.Xu,
J.Xin.
Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii To Be Published.
Page generated: Thu Dec 28 09:12:21 2023
|