Magnesium in PDB 8hlv: Bry-Lhcii Homotrimer of Bryopsis Corticulans

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 42;

Binding sites:

The binding sites of Magnesium atom in the Bry-Lhcii Homotrimer of Bryopsis Corticulans (pdb code 8hlv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 42 binding sites of Magnesium where determined in the Bry-Lhcii Homotrimer of Bryopsis Corticulans, PDB code: 8hlv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 42 in the Bry-Lhcii Homotrimer of Bryopsis Corticulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bry-Lhcii Homotrimer of Bryopsis Corticulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg305 b:82.0 occ:1.00 MG A:CHL305 0.0 82.0 1.0 NA A:CHL305 2.0 82.0 1.0 ND A:CHL305 2.0 82.0 1.0 NB A:CHL305 2.0 82.0 1.0 NC A:CHL305 2.1 82.0 1.0 O A:TRP11 2.2 82.0 1.0 C4D A:CHL305 2.9 82.0 1.0 C4A A:CHL305 3.0 82.0 1.0 C1A A:CHL305 3.0 82.0 1.0 C1B A:CHL305 3.0 82.0 1.0 C4B A:CHL305 3.0 82.0 1.0 C1C A:CHL305 3.1 82.0 1.0 C1D A:CHL305 3.1 82.0 1.0 C4C A:CHL305 3.1 82.0 1.0 C A:TRP11 3.4 82.0 1.0 CHB A:CHL305 3.4 82.0 1.0 CHC A:CHL305 3.6 82.0 1.0 CHA A:CHL305 3.6 82.0 1.0 CHD A:CHL305 3.6 82.0 1.0 C23 A:0IE303 4.1 82.5 1.0 C8 A:LHG319 4.1 82.0 1.0 C3D A:CHL305 4.2 82.0 1.0 C2D A:CHL305 4.2 82.0 1.0 CA A:TRP11 4.3 82.0 1.0 C3A A:CHL305 4.3 82.0 1.0 C2B A:CHL305 4.3 82.0 1.0 C2A A:CHL305 4.3 82.0 1.0 N A:LEU12 4.4 82.0 1.0 C3B A:CHL305 4.4 82.0 1.0 C2C A:CHL305 4.4 82.0 1.0 C3C A:CHL305 4.4 82.0 1.0 CA A:LEU12 4.4 82.0 1.0 C10 A:LHG319 4.7 82.0 1.0 CB A:TRP11 4.8 82.0 1.0 C A:LEU12 4.9 82.0 1.0 CBD A:CHL305 5.0 82.0 1.0 C18 A:0IE303 5.0 82.5 1.0 C9 A:LHG319 5.0 82.0 1.0

Magnesium binding site 2 out of 42 in the Bry-Lhcii Homotrimer of Bryopsis Corticulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bry-Lhcii Homotrimer of Bryopsis Corticulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg306 b:82.0 occ:1.00 MG A:CHL306 0.0 82.0 1.0 NA A:CHL306 2.0 82.0 1.0 ND A:CHL306 2.0 82.0 1.0 NB A:CHL306 2.0 82.0 1.0 NC A:CHL306 2.1 82.0 1.0 OE2 A:GLU53 2.1 82.0 1.0 C4D A:CHL306 2.9 82.0 1.0 C4A A:CHL306 3.0 82.0 1.0 C1A A:CHL306 3.0 82.0 1.0 C1B A:CHL306 3.0 82.0 1.0 C4B A:CHL306 3.0 82.0 1.0 C1C A:CHL306 3.0 82.0 1.0 C1D A:CHL306 3.1 82.0 1.0 C4C A:CHL306 3.1 82.0 1.0 CD A:GLU53 3.1 82.0 1.0 CHB A:CHL306 3.5 82.0 1.0 CHC A:CHL306 3.5 82.0 1.0 CHA A:CHL306 3.6 82.0 1.0 CHD A:CHL306 3.6 82.0 1.0 C41 A:0IE302 3.6 82.0 1.0 OE1 A:GLU53 3.9 82.0 1.0 CG A:GLU53 4.0 82.0 1.0 C3D A:CHL306 4.2 82.0 1.0 C2D A:CHL306 4.2 82.0 1.0 C3A A:CHL306 4.3 82.0 1.0 C2A A:CHL306 4.3 82.0 1.0 NE A:ARG174 4.3 82.0 1.0 C2B A:CHL306 4.3 82.0 1.0 C3B A:CHL306 4.3 82.0 1.0 C17 A:0IE302 4.4 82.0 1.0 C2C A:CHL306 4.4 82.0 1.0 C3C A:CHL306 4.4 82.0 1.0 NH2 A:ARG174 4.5 82.0 1.0 C18 A:0IE302 4.5 82.0 1.0 CZ A:ARG174 4.7 82.0 1.0 CBA A:CHL306 4.7 82.0 1.0 O2A A:CHL306 4.8 82.0 1.0 CB A:GLU53 4.8 82.0 1.0 C28 A:0IE302 4.8 82.0 1.0 C16 A:0IE302 5.0 82.0 1.0 CBD A:CHL306 5.0 82.0 1.0 CMA A:CHL306 5.0 82.0 1.0

Magnesium binding site 3 out of 42 in the Bry-Lhcii Homotrimer of Bryopsis Corticulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bry-Lhcii Homotrimer of Bryopsis Corticulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg307 b:82.0 occ:1.00 MG A:CLA307 0.0 82.0 1.0 NE2 A:HIS56 1.9 82.0 1.0 NB A:CLA307 2.0 82.0 1.0 ND A:CLA307 2.0 82.0 1.0 NC A:CLA307 2.1 82.0 1.0 NA A:CLA307 2.1 82.0 1.0 CD2 A:HIS56 2.8 82.0 1.0 C4D A:CLA307 2.9 82.0 1.0 CE1 A:HIS56 2.9 82.0 1.0 C1B A:CLA307 3.0 82.0 1.0 C4A A:CLA307 3.0 82.0 1.0 C4B A:CLA307 3.1 82.0 1.0 C1C A:CLA307 3.1 82.0 1.0 C4C A:CLA307 3.1 82.0 1.0 C1A A:CLA307 3.1 82.0 1.0 C1D A:CLA307 3.1 82.0 1.0 CHB A:CLA307 3.4 82.0 1.0 CHC A:CLA307 3.4 82.0 1.0 CHA A:CLA307 3.5 82.0 1.0 CHD A:CLA307 3.5 82.0 1.0 C10 A:CHL313 3.9 82.0 1.0 CG A:HIS56 4.0 82.0 1.0 ND1 A:HIS56 4.0 82.0 1.0 C8 A:CHL313 4.2 82.0 1.0 C3D A:CLA307 4.2 82.0 1.0 C2B A:CLA307 4.3 82.0 1.0 C3B A:CLA307 4.3 82.0 1.0 C2C A:CLA307 4.3 82.0 1.0 C2D A:CLA307 4.3 82.0 1.0 C3C A:CLA307 4.4 82.0 1.0 C3A A:CLA307 4.4 82.0 1.0 C2A A:CLA307 4.5 82.0 1.0 C7 A:CHL313 4.7 82.0 1.0 CBD A:CLA307 4.9 82.0 1.0 C11 A:CHL313 4.9 82.0 1.0 C6 A:CHL313 5.0 82.0 1.0

Magnesium binding site 4 out of 42 in the Bry-Lhcii Homotrimer of Bryopsis Corticulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bry-Lhcii Homotrimer of Bryopsis Corticulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg308 b:82.0 occ:1.00 MG A:CLA308 0.0 82.0 1.0 NB A:CLA308 2.0 82.0 1.0 ND A:CLA308 2.0 82.0 1.0 NC A:CLA308 2.1 82.0 1.0 NA A:CLA308 2.1 82.0 1.0 C4D A:CLA308 2.9 82.0 1.0 C1B A:CLA308 3.0 82.0 1.0 C4A A:CLA308 3.0 82.0 1.0 C4B A:CLA308 3.1 82.0 1.0 C1C A:CLA308 3.1 82.0 1.0 C4C A:CLA308 3.1 82.0 1.0 C1A A:CLA308 3.1 82.0 1.0 C1D A:CLA308 3.2 82.0 1.0 CHB A:CLA308 3.4 82.0 1.0 CHC A:CLA308 3.4 82.0 1.0 O23 A:NEX304 3.5 79.9 1.0 CHA A:CLA308 3.5 82.0 1.0 CHD A:CLA308 3.5 82.0 1.0 C24 A:NEX304 3.7 79.9 1.0 C23 A:NEX304 3.9 79.9 1.0 C22 A:NEX304 4.2 79.9 1.0 C3D A:CLA308 4.3 82.0 1.0 C2B A:CLA308 4.3 82.0 1.0 C3B A:CLA308 4.3 82.0 1.0 C2C A:CLA308 4.3 82.0 1.0 C2D A:CLA308 4.4 82.0 1.0 C3C A:CLA308 4.4 82.0 1.0 C3A A:CLA308 4.4 82.0 1.0 O A:GLY66 4.4 82.0 1.0 CA A:GLY66 4.5 82.0 1.0 C2A A:CLA308 4.5 82.0 1.0 C25 A:NEX304 4.6 79.9 1.0 C A:GLY66 4.9 82.0 1.0 CBD A:CLA308 4.9 82.0 1.0 C38 A:NEX304 5.0 79.9 1.0

Magnesium binding site 5 out of 42 in the Bry-Lhcii Homotrimer of Bryopsis Corticulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bry-Lhcii Homotrimer of Bryopsis Corticulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg309 b:82.7 occ:1.00 MG A:CHL309 0.0 82.7 1.0 NA A:CHL309 2.0 82.7 1.0 ND A:CHL309 2.0 82.7 1.0 NB A:CHL309 2.0 82.7 1.0 NC A:CHL309 2.1 82.7 1.0 O A:VAL108 2.2 83.0 1.0 C4D A:CHL309 2.9 82.7 1.0 C4A A:CHL309 3.0 82.7 1.0 C1B A:CHL309 3.0 82.7 1.0 C1A A:CHL309 3.0 82.7 1.0 C4B A:CHL309 3.0 82.7 1.0 C1D A:CHL309 3.1 82.7 1.0 C1C A:CHL309 3.1 82.7 1.0 C4C A:CHL309 3.1 82.7 1.0 C A:VAL108 3.4 83.0 1.0 CHB A:CHL309 3.5 82.7 1.0 CHC A:CHL309 3.6 82.7 1.0 CHA A:CHL309 3.6 82.7 1.0 CHD A:CHL309 3.6 82.7 1.0 CA A:VAL108 4.1 83.0 1.0 C3D A:CHL309 4.2 82.7 1.0 C2D A:CHL309 4.3 82.7 1.0 C3A A:CHL309 4.3 82.7 1.0 C2B A:CHL309 4.3 82.7 1.0 C2A A:CHL309 4.3 82.7 1.0 O A:HIS109 4.3 84.0 1.0 C3B A:CHL309 4.3 82.7 1.0 C2C A:CHL309 4.4 82.7 1.0 C3C A:CHL309 4.4 82.7 1.0 C A:HIS109 4.4 84.0 1.0 N A:HIS109 4.5 84.0 1.0 CB A:HIS109 4.7 84.0 1.0 CA A:HIS109 4.8 84.0 1.0 N A:ALA110 4.8 83.5 1.0 N A:VAL108 4.9 83.0 1.0 CBD A:CHL309 5.0 82.7 1.0 CBA A:CHL309 5.0 82.7 1.0 CMA A:CHL309 5.0 82.7 1.0

Magnesium binding site 6 out of 42 in the Bry-Lhcii Homotrimer of Bryopsis Corticulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Bry-Lhcii Homotrimer of Bryopsis Corticulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg310 b:82.0 occ:1.00 MG A:CHL310 0.0 82.0 1.0 NA A:CHL310 2.0 82.0 1.0 ND A:CHL310 2.0 82.0 1.0 NB A:CHL310 2.0 82.0 1.0 NC A:CHL310 2.1 82.0 1.0 C4D A:CHL310 2.9 82.0 1.0 C4A A:CHL310 3.0 82.0 1.0 C1A A:CHL310 3.0 82.0 1.0 C1B A:CHL310 3.0 82.0 1.0 C4B A:CHL310 3.0 82.0 1.0 C1D A:CHL310 3.1 82.0 1.0 C1C A:CHL310 3.1 82.0 1.0 C4C A:CHL310 3.1 82.0 1.0 CHB A:CHL310 3.5 82.0 1.0 CHC A:CHL310 3.5 82.0 1.0 CHA A:CHL310 3.6 82.0 1.0 CHD A:CHL310 3.6 82.0 1.0 C38 A:NEX304 4.0 79.9 1.0 OE1 A:GLN120 4.2 82.0 1.0 C3D A:CHL310 4.2 82.0 1.0 C2D A:CHL310 4.2 82.0 1.0 C2B A:CHL310 4.3 82.0 1.0 C3A A:CHL310 4.3 82.0 1.0 C2A A:CHL310 4.3 82.0 1.0 C3B A:CHL310 4.3 82.0 1.0 C3C A:CHL310 4.4 82.0 1.0 C2C A:CHL310 4.4 82.0 1.0 CG2 A:ILE116 4.6 82.0 1.0 CBA A:CLA308 4.8 82.0 1.0 CD A:GLN120 4.8 82.0 1.0 CBD A:CHL310 5.0 82.0 1.0

Magnesium binding site 7 out of 42 in the Bry-Lhcii Homotrimer of Bryopsis Corticulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Bry-Lhcii Homotrimer of Bryopsis Corticulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg311 b:83.1 occ:1.00 MG A:CHL311 0.0 83.1 1.0 NA A:CHL311 2.0 83.1 1.0 ND A:CHL311 2.0 83.1 1.0 NB A:CHL311 2.0 83.1 1.0 NC A:CHL311 2.1 83.1 1.0 C4D A:CHL311 2.9 83.1 1.0 C4A A:CHL311 3.0 83.1 1.0 C1A A:CHL311 3.0 83.1 1.0 C1B A:CHL311 3.0 83.1 1.0 C4B A:CHL311 3.0 83.1 1.0 C1C A:CHL311 3.0 83.1 1.0 C1D A:CHL311 3.1 83.1 1.0 C4C A:CHL311 3.1 83.1 1.0 CHB A:CHL311 3.4 83.1 1.0 CHC A:CHL311 3.5 83.1 1.0 CHA A:CHL311 3.6 83.1 1.0 CHD A:CHL311 3.6 83.1 1.0 OMC A:CHL310 3.7 82.0 1.0 C15 B:CHL305 3.9 82.0 1.0 C3D A:CHL311 4.2 83.1 1.0 C2D A:CHL311 4.2 83.1 1.0 C3A A:CHL311 4.3 83.1 1.0 C2A A:CHL311 4.3 83.1 1.0 C2B A:CHL311 4.3 83.1 1.0 C3B A:CHL311 4.3 83.1 1.0 C2C A:CHL311 4.4 83.1 1.0 C3C A:CHL311 4.4 83.1 1.0 CMC A:CHL310 4.4 82.0 1.0 C16 B:CHL305 4.7 82.0 1.0 C37 B:0IE303 4.8 82.0 1.0 CBD A:CHL311 5.0 83.1 1.0 C17 B:CHL305 5.0 82.0 1.0

Magnesium binding site 8 out of 42 in the Bry-Lhcii Homotrimer of Bryopsis Corticulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Bry-Lhcii Homotrimer of Bryopsis Corticulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg312 b:79.0 occ:1.00 MG A:CHL312 0.0 79.0 1.0 NA A:CHL312 2.0 79.0 1.0 ND A:CHL312 2.0 79.0 1.0 NB A:CHL312 2.0 79.0 1.0 NC A:CHL312 2.1 79.0 1.0 C4D A:CHL312 2.9 79.0 1.0 C4A A:CHL312 3.0 79.0 1.0 C1B A:CHL312 3.0 79.0 1.0 C1A A:CHL312 3.0 79.0 1.0 C1C A:CHL312 3.0 79.0 1.0 C4B A:CHL312 3.0 79.0 1.0 C1D A:CHL312 3.1 79.0 1.0 C4C A:CHL312 3.1 79.0 1.0 CZ A:PHE150 3.3 82.0 1.0 CHB A:CHL312 3.5 79.0 1.0 CHC A:CHL312 3.5 79.0 1.0 CHA A:CHL312 3.6 79.0 1.0 CE2 A:PHE150 3.6 82.0 1.0 CHD A:CHL312 3.6 79.0 1.0 C3D A:CHL312 4.2 79.0 1.0 C2D A:CHL312 4.2 79.0 1.0 CE1 A:PHE150 4.3 82.0 1.0 C3A A:CHL312 4.3 79.0 1.0 C2B A:CHL312 4.3 79.0 1.0 C2A A:CHL312 4.3 79.0 1.0 C3B A:CHL312 4.3 79.0 1.0 C2C A:CHL312 4.4 79.0 1.0 C3C A:CHL312 4.4 79.0 1.0 O A:ALA127 4.5 82.0 1.0 CD2 A:PHE150 4.7 82.0 1.0 CBA A:CHL312 5.0 79.0 1.0 CBD A:CHL312 5.0 79.0 1.0 CB A:ARG131 5.0 82.0 1.0

Magnesium binding site 9 out of 42 in the Bry-Lhcii Homotrimer of Bryopsis Corticulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Bry-Lhcii Homotrimer of Bryopsis Corticulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg313 b:82.0 occ:1.00 MG A:CHL313 0.0 82.0 1.0 NA A:CHL313 2.0 82.0 1.0 ND A:CHL313 2.0 82.0 1.0 NB A:CHL313 2.0 82.0 1.0 NC A:CHL313 2.1 82.0 1.0 OE1 A:GLU128 2.5 82.0 1.0 C4D A:CHL313 2.9 82.0 1.0 C1A A:CHL313 3.0 82.0 1.0 C4A A:CHL313 3.0 82.0 1.0 C1B A:CHL313 3.0 82.0 1.0 C4B A:CHL313 3.0 82.0 1.0 C1C A:CHL313 3.0 82.0 1.0 C1D A:CHL313 3.1 82.0 1.0 C4C A:CHL313 3.1 82.0 1.0 CD A:GLU128 3.4 82.0 1.0 CHB A:CHL313 3.5 82.0 1.0 CHA A:CHL313 3.5 82.0 1.0 CHC A:CHL313 3.5 82.0 1.0 CHD A:CHL313 3.6 82.0 1.0 CMD A:CLA307 4.1 82.0 1.0 CG A:GLU128 4.1 82.0 1.0 C3D A:CHL313 4.2 82.0 1.0 OE2 A:GLU128 4.2 82.0 1.0 C2D A:CHL313 4.3 82.0 1.0 C2A A:CHL313 4.3 82.0 1.0 NH2 A:ARG131 4.3 82.0 1.0 C2B A:CHL313 4.3 82.0 1.0 C3A A:CHL313 4.3 82.0 1.0 C3B A:CHL313 4.3 82.0 1.0 C2C A:CHL313 4.4 82.0 1.0 C3C A:CHL313 4.4 82.0 1.0 C4 B:CHL305 4.5 82.0 1.0 CBA A:CHL313 4.7 82.0 1.0 C2 B:CHL305 4.8 82.0 1.0 C3 B:CHL305 4.8 82.0 1.0 CB A:GLU128 4.9 82.0 1.0 CBD A:CHL313 4.9 82.0 1.0 O1D A:CHL313 4.9 82.0 1.0

Magnesium binding site 10 out of 42 in the Bry-Lhcii Homotrimer of Bryopsis Corticulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Bry-Lhcii Homotrimer of Bryopsis Corticulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg314 b:82.0 occ:1.00 MG A:CLA314 0.0 82.0 1.0 NB A:CLA314 2.0 82.0 1.0 ND A:CLA314 2.0 82.0 1.0 NC A:CLA314 2.1 82.0 1.0 NA A:CLA314 2.1 82.0 1.0 OE2 A:GLU169 2.1 82.0 1.0 C4D A:CLA314 2.9 82.0 1.0 C1B A:CLA314 3.0 82.0 1.0 C4A A:CLA314 3.0 82.0 1.0 C4B A:CLA314 3.1 82.0 1.0 C1C A:CLA314 3.1 82.0 1.0 C4C A:CLA314 3.1 82.0 1.0 C1A A:CLA314 3.1 82.0 1.0 C1D A:CLA314 3.1 82.0 1.0 CD A:GLU169 3.2 82.0 1.0 CHB A:CLA314 3.4 82.0 1.0 CHC A:CLA314 3.4 82.0 1.0 CHA A:CLA314 3.5 82.0 1.0 CHD A:CLA314 3.5 82.0 1.0 OE1 A:GLU169 4.0 82.0 1.0 CG A:GLU169 4.0 82.0 1.0 C33 A:0UR301 4.2 82.0 1.0 C3D A:CLA314 4.2 82.0 1.0 C2B A:CLA314 4.3 82.0 1.0 C3B A:CLA314 4.3 82.0 1.0 C2C A:CLA314 4.3 82.0 1.0 C2D A:CLA314 4.4 82.0 1.0 C3C A:CLA314 4.4 82.0 1.0 NE A:ARG58 4.4 82.0 1.0 C3A A:CLA314 4.4 82.0 1.0 C2A A:CLA314 4.4 82.0 1.0 NH2 A:ARG58 4.5 82.0 1.0 C17 A:0UR301 4.5 82.0 1.0 O2A A:CLA314 4.5 82.0 1.0 CZ A:ARG58 4.7 82.0 1.0 CBA A:CLA314 4.8 82.0 1.0 CB A:GLU169 4.9 82.0 1.0 C16 A:0UR301 4.9 82.0 1.0 CBD A:CLA314 4.9 82.0 1.0 C18 A:0UR301 4.9 82.0 1.0

Z.Li, C.Zhou, S.Zhao, J.Zhang, X.Liu, M.Sang, X.Qin, Y.Yang, G.Han, T.Kuang, J.R.Shen, W.Wang. Structural and Functional Properties of Different Types of Siphonous Lhcii Trimers From An Intertidal Green Alga Bryopsis Corticulans. Structure 2023.
ISSN: ISSN 0969-2126
PubMed: 37633266
DOI: 10.1016/J.STR.2023.08.001