Magnesium in PDB 8hmh: The Closed State of RGLG2-Vwa

All present enzymatic activity of The Closed State of RGLG2-Vwa:
2.3.2.27;

The structure of The Closed State of RGLG2-Vwa, PDB code: 8hmh was solved by Q.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.87 / 2.56
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	62.96, 62.96, 155.05, 90, 90, 90
R / Rfree (%)	18.7 / 24.6

The binding sites of Magnesium atom in the The Closed State of RGLG2-Vwa (pdb code 8hmh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the The Closed State of RGLG2-Vwa, PDB code: 8hmh:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the The Closed State of RGLG2-Vwa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Closed State of RGLG2-Vwa within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:47.8 occ:1.00 OG B:SER132 2.0 51.4 1.0 O B:HOH505 2.1 50.6 1.0 OD1 B:ASP252 2.1 51.7 1.0 OG1 B:THR130 2.6 42.3 1.0 CG B:ASP252 3.1 49.5 1.0 CB B:SER132 3.2 44.2 1.0 OD2 B:ASP252 3.3 46.4 1.0 CB B:THR130 3.7 44.2 1.0 N B:GLY253 3.9 43.8 1.0 OG1 B:THR224 4.0 44.4 1.0 C B:ASP252 4.1 51.4 1.0 CA B:GLY253 4.2 47.9 1.0 OD2 B:ASP128 4.2 51.0 1.0 CG2 B:THR130 4.3 43.8 1.0 O B:ASP252 4.4 55.5 1.0 CB B:ASP252 4.4 51.5 1.0 CA B:SER132 4.4 42.0 1.0 OD1 B:ASP128 4.6 43.2 1.0 N B:SER132 4.7 45.1 1.0 CA B:ASP252 4.7 53.0 1.0 CG B:ASP128 4.8 47.0 1.0 C B:SER132 4.9 50.2 1.0 N B:ASP252 5.0 51.2 1.0

Magnesium binding site 2 out of 4 in the The Closed State of RGLG2-Vwa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Closed State of RGLG2-Vwa within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:51.0 occ:1.00 OD1 B:ASP173 2.2 58.3 1.0 O B:HOH502 2.3 50.6 1.0 OD1 B:ASP171 2.3 58.4 1.0 CG B:ASP173 3.0 55.5 1.0 OD2 B:ASP173 3.0 54.4 1.0 CG B:ASP171 3.2 51.7 1.0 OD1 B:ASN122 3.3 58.9 1.0 OD2 B:ASP171 3.4 51.1 1.0 O B:HOH516 4.3 34.8 1.0 CB B:ASP173 4.4 42.6 1.0 N B:ASP173 4.5 55.7 1.0 CG B:ASN122 4.5 50.2 1.0 CB B:ASP171 4.6 42.4 1.0 N B:GLU172 4.7 54.9 1.0 CA B:ASP173 5.0 53.2 1.0

Magnesium binding site 3 out of 4 in the The Closed State of RGLG2-Vwa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Closed State of RGLG2-Vwa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:57.9 occ:1.00 OD1 A:ASP252 1.9 58.7 1.0 OG A:SER132 2.0 52.0 1.0 O A:HOH509 2.1 48.4 1.0 OG1 A:THR130 2.1 51.4 1.0 CG A:ASP252 2.8 56.9 1.0 OD2 A:ASP252 3.1 51.0 1.0 CB A:THR130 3.3 49.7 1.0 CB A:SER132 3.3 54.0 1.0 OD2 A:ASP128 3.9 49.9 1.0 OG1 A:THR224 4.0 48.3 1.0 CG2 A:THR130 4.0 48.2 1.0 OD1 A:ASP128 4.0 52.4 1.0 N A:GLY253 4.1 44.6 1.0 CB A:ASP252 4.3 56.5 1.0 C A:ASP252 4.3 51.0 1.0 O A:HOH513 4.3 49.3 1.0 CA A:SER132 4.3 49.7 1.0 N A:SER132 4.4 54.6 1.0 CG A:ASP128 4.4 54.8 1.0 CA A:THR130 4.5 54.6 1.0 CA A:GLY253 4.5 56.8 1.0 ND2 A:ASN133 4.6 50.8 1.0 O A:ASP252 4.6 53.4 1.0 C A:THR130 4.7 56.8 1.0 N A:ASN133 4.7 59.5 1.0 CA A:ASP252 4.7 56.0 1.0 O A:THR130 4.7 56.7 1.0 C A:SER132 4.8 54.9 1.0 N A:ASP252 4.9 51.2 1.0 N A:THR130 4.9 52.2 1.0

Magnesium binding site 4 out of 4 in the The Closed State of RGLG2-Vwa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Closed State of RGLG2-Vwa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:59.0 occ:1.00 O A:HOH502 1.9 52.0 1.0 O A:HOH505 1.9 55.5 1.0 OD1 A:ASP173 2.0 58.2 1.0 O A:HOH504 2.2 51.7 1.0 OD1 A:ASP171 2.2 60.7 1.0 CG A:ASP173 2.7 56.6 1.0 OD2 A:ASP173 2.9 60.3 1.0 CG A:ASP171 3.0 56.3 1.0 OD2 A:ASP171 3.0 51.1 1.0 ND2 A:ASN122 3.7 53.5 1.0 CB A:ASP173 4.1 52.4 1.0 N A:ASP173 4.2 54.6 1.0 CB A:ASP171 4.4 46.9 1.0 N A:ASN174 4.5 56.2 1.0 CA A:ASP173 4.6 56.3 1.0 O A:HOH515 4.6 36.4 1.0 N A:GLU172 4.7 58.7 1.0 CG A:ASN122 4.7 58.6 1.0 N A:LEU175 4.8 48.8 1.0 C A:ASP173 4.8 54.3 1.0 CA A:ASP171 4.9 56.1 1.0 C A:ASP171 5.0 57.0 1.0

Q.Wang, Q.Wang. N/A N/A.