Magnesium in PDB 8hpr: Lpqy-Sugabc in State 4

The binding sites of Magnesium atom in the Lpqy-Sugabc in State 4 (pdb code 8hpr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lpqy-Sugabc in State 4, PDB code: 8hpr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Lpqy-Sugabc in State 4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lpqy-Sugabc in State 4 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:89.6 occ:1.00 OE1 C:GLN87 2.2 86.5 1.0 NE2 C:GLN87 2.3 86.5 1.0 CD C:GLN87 2.5 86.5 1.0 O2B C:ATP501 2.5 110.5 1.0 O1G C:ATP501 2.5 110.5 1.0 OG C:SER48 2.6 105.2 1.0 O3G C:ATP501 2.7 110.5 1.0 PG C:ATP501 2.9 110.5 1.0 O3B C:ATP501 3.0 110.5 1.0 PB C:ATP501 3.3 110.5 1.0 CB C:SER48 3.8 105.2 1.0 CG C:GLN87 3.9 86.5 1.0 OE1 C:GLN164 4.0 83.5 1.0 O1B C:ATP501 4.2 110.5 1.0 OD1 C:ASP163 4.2 84.8 1.0 N C:SER48 4.4 105.2 1.0 CB C:GLN87 4.4 86.5 1.0 O2G C:ATP501 4.4 110.5 1.0 CB D:SER140 4.4 93.5 1.0 N D:GLY141 4.5 77.8 1.0 O3A C:ATP501 4.6 110.5 1.0 CA C:SER48 4.6 105.2 1.0 OG D:SER140 4.7 93.5 1.0 OD2 C:ASP163 4.7 84.8 1.0 O1A C:ATP501 4.8 110.5 1.0 CG C:ASP163 4.9 84.8 1.0 CB C:LYS47 5.0 102.0 1.0

Magnesium binding site 2 out of 2 in the Lpqy-Sugabc in State 4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lpqy-Sugabc in State 4 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:85.6 occ:1.00 O1G D:ATP501 2.2 117.5 1.0 OG D:SER48 2.2 92.6 1.0 OE1 D:GLN87 2.3 81.6 1.0 CD D:GLN87 2.8 81.6 1.0 O2B D:ATP501 2.9 117.5 1.0 OE1 D:GLN164 3.1 84.8 1.0 CB D:SER48 3.1 92.6 1.0 NE2 D:GLN87 3.3 81.6 1.0 O1B D:ATP501 3.5 117.5 1.0 PB D:ATP501 3.6 117.5 1.0 PG D:ATP501 3.6 117.5 1.0 OD2 D:ASP163 3.8 83.4 1.0 CG D:GLN87 3.8 81.6 1.0 OD1 D:ASP163 3.8 83.4 1.0 CB D:GLN87 3.8 81.6 1.0 CD D:GLN164 4.0 84.8 1.0 NE2 D:GLN164 4.1 84.8 1.0 O3B D:ATP501 4.1 117.5 1.0 CA C:GLY141 4.1 100.7 1.0 CG D:ASP163 4.1 83.4 1.0 O2G D:ATP501 4.2 117.5 1.0 CA D:SER48 4.3 92.6 1.0 N D:SER48 4.5 92.6 1.0 OG C:SER140 4.8 108.2 1.0 O3G D:ATP501 4.8 117.5 1.0 N C:GLY141 4.8 100.7 1.0 O C:SER140 4.9 108.2 1.0

J.Liang, X.Yang, T.Hu, Y.Gao, Q.Yang, H.Yang, W.Peng, X.Zhou, L.W.Guddat, B.Zhang, Z.Rao, F.Liu. Structural Insights Into Trehalose Capture and Translocation By Mycobacterial Lpqy-Sugabc. Structure 2023.
ISSN: ISSN 0969-2126
PubMed: 37619560
DOI: 10.1016/J.STR.2023.07.014