Magnesium in PDB 8hyk: Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P

The structure of Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P, PDB code: 8hyk was solved by T.-P.Ko, Y.-C.Wang, C.-S.Yang, M.-H.Hou, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.49 / 2.02
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.418, 56.94, 64.812, 90, 97.02, 90
R / Rfree (%)	16.5 / 21

The binding sites of Magnesium atom in the Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P (pdb code 8hyk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P, PDB code: 8hyk:

Magnesium binding site 1 out of 1 in the Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:10.1 occ:1.00 O A:HOH505 1.8 31.7 1.0 O A:HOH523 2.0 28.2 1.0 OD2 A:ASP67 2.0 29.8 1.0 O13 A:NE0401 2.0 24.4 1.0 O21 A:NE0401 2.0 28.1 1.0 O16 A:NE0401 2.1 26.0 1.0 CG A:ASP67 3.0 26.1 1.0 P15 A:NE0401 3.2 28.3 1.0 P11 A:NE0401 3.2 30.2 1.0 P19 A:NE0401 3.3 30.4 1.0 OD1 A:ASP67 3.4 26.9 1.0 O18 A:NE0401 3.6 30.3 1.0 O14 A:NE0401 3.6 28.3 1.0 O12 A:NE0401 3.9 32.1 1.0 O20 A:NE0401 4.1 31.8 1.0 CB A:ASP67 4.3 24.9 1.0 O A:HOH599 4.3 17.7 1.0 O22 A:NE0401 4.5 28.2 1.0 N A:SER53 4.5 17.7 1.0 O17 A:NE0401 4.5 27.1 1.0 OG A:SER53 4.5 19.2 1.0 O10 A:NE0401 4.6 29.3 1.0 O A:ASP65 4.6 28.9 1.0 CA A:GLY52 4.7 20.6 1.0 C09 A:NE0401 4.9 31.0 1.0

T.-P.Ko, Y.-C.Wang, C.-S.Yang, M.-H.Hou, Y.Chen. Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P To Be Published.