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Magnesium in PDB 8hyk: Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P

Protein crystallography data

The structure of Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P, PDB code: 8hyk was solved by T.-P.Ko, Y.-C.Wang, C.-S.Yang, M.-H.Hou, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.49 / 2.02
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.418, 56.94, 64.812, 90, 97.02, 90
R / Rfree (%) 16.5 / 21

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P (pdb code 8hyk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P, PDB code: 8hyk:

Magnesium binding site 1 out of 1 in 8hyk

Go back to Magnesium Binding Sites List in 8hyk
Magnesium binding site 1 out of 1 in the Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:10.1
occ:1.00
O A:HOH505 1.8 31.7 1.0
O A:HOH523 2.0 28.2 1.0
OD2 A:ASP67 2.0 29.8 1.0
O13 A:NE0401 2.0 24.4 1.0
O21 A:NE0401 2.0 28.1 1.0
O16 A:NE0401 2.1 26.0 1.0
CG A:ASP67 3.0 26.1 1.0
P15 A:NE0401 3.2 28.3 1.0
P11 A:NE0401 3.2 30.2 1.0
P19 A:NE0401 3.3 30.4 1.0
OD1 A:ASP67 3.4 26.9 1.0
O18 A:NE0401 3.6 30.3 1.0
O14 A:NE0401 3.6 28.3 1.0
O12 A:NE0401 3.9 32.1 1.0
O20 A:NE0401 4.1 31.8 1.0
CB A:ASP67 4.3 24.9 1.0
O A:HOH599 4.3 17.7 1.0
O22 A:NE0401 4.5 28.2 1.0
N A:SER53 4.5 17.7 1.0
O17 A:NE0401 4.5 27.1 1.0
OG A:SER53 4.5 19.2 1.0
O10 A:NE0401 4.6 29.3 1.0
O A:ASP65 4.6 28.9 1.0
CA A:GLY52 4.7 20.6 1.0
C09 A:NE0401 4.9 31.0 1.0

Reference:

T.-P.Ko, Y.-C.Wang, C.-S.Yang, M.-H.Hou, Y.Chen. Cd-Ntase Efcdne in Complex with Intermediate Pppu[2'-5']P To Be Published.
Page generated: Fri Oct 4 08:56:08 2024

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