Magnesium in PDB 8i1u: Human Tric-PHLP2A Complex in the Closed State

The structure of Human Tric-PHLP2A Complex in the Closed State also contains other interesting chemical elements:

Fluorine	(F)	48 atoms
Aluminium	(Al)	16 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Human Tric-PHLP2A Complex in the Closed State (pdb code 8i1u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Human Tric-PHLP2A Complex in the Closed State, PDB code: 8i1u:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in the Human Tric-PHLP2A Complex in the Closed State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Tric-PHLP2A Complex in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:47.9 occ:1.00 O3A A:ADP601 2.1 47.5 1.0 O1A A:ADP601 2.2 47.5 1.0 OD1 A:ASP88 2.5 40.7 1.0 PB A:ADP601 2.6 47.5 1.0 PA A:ADP601 2.6 47.5 1.0 O2B A:ADP601 2.7 47.5 1.0 F1 A:AF3603 2.7 43.4 1.0 O1B A:ADP601 2.7 47.5 1.0 NZ A:LYS159 3.3 39.5 1.0 CG A:ASP88 3.5 40.7 1.0 O5' A:ADP601 3.8 47.5 1.0 O2A A:ADP601 3.8 47.5 1.0 OD2 A:ASP88 3.8 40.7 1.0 O3B A:ADP601 4.0 47.5 1.0 OG A:SER158 4.1 42.0 1.0 AL A:AF3603 4.2 43.4 1.0 O A:SER155 4.4 41.8 1.0 N A:GLY89 4.4 42.2 1.0 CE A:LYS159 4.6 39.5 1.0 F3 A:AF3603 4.7 43.4 1.0 C5' A:ADP601 4.7 47.5 1.0 CB A:ASP88 4.8 40.7 1.0

Magnesium binding site 2 out of 16 in the Human Tric-PHLP2A Complex in the Closed State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Tric-PHLP2A Complex in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:28.1 occ:1.00 O1B B:ADP601 2.0 29.4 1.0 O1A B:ADP601 2.3 29.4 1.0 OD1 B:ASP97 2.9 28.6 1.0 OD2 B:ASP97 3.2 28.6 1.0 O B:THR166 3.2 27.7 1.0 PB B:ADP601 3.3 29.4 1.0 O3A B:ADP601 3.4 29.4 1.0 CG B:ASP97 3.4 28.6 1.0 PA B:ADP601 3.4 29.4 1.0 CA B:THR166 3.6 27.7 1.0 CG2 B:THR166 3.6 27.7 1.0 C B:THR166 3.8 27.7 1.0 F1 B:AF3603 3.8 32.0 1.0 O3B B:ADP601 4.1 29.4 1.0 O B:THR165 4.1 27.7 1.0 CB B:THR166 4.2 27.7 1.0 O5' B:ADP601 4.3 29.4 1.0 O2B B:ADP601 4.3 29.4 1.0 NZ B:LYS170 4.6 28.1 1.0 O2A B:ADP601 4.6 29.4 1.0 N B:THR166 4.7 27.7 1.0 AL B:AF3603 4.8 32.0 1.0 C B:THR165 4.9 27.7 1.0 OG1 B:THR166 4.9 27.7 1.0 CB B:ASP97 4.9 28.6 1.0

Magnesium binding site 3 out of 16 in the Human Tric-PHLP2A Complex in the Closed State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human Tric-PHLP2A Complex in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:34.3 occ:1.00 F2 C:AF3603 2.0 35.9 1.0 OD1 C:ASP93 2.1 34.0 1.0 OD2 C:ASP93 2.1 34.0 1.0 CG C:ASP93 2.4 34.0 1.0 O1A C:ADP601 2.7 34.4 1.0 O1B C:ADP601 3.3 34.4 1.0 AL C:AF3603 3.6 35.9 1.0 O C:SER159 3.8 34.2 1.0 CB C:ASP93 3.9 34.0 1.0 OG C:SER159 4.1 34.2 1.0 PA C:ADP601 4.2 34.4 1.0 O3B C:ADP601 4.3 34.4 1.0 CE C:LYS163 4.3 35.0 1.0 PB C:ADP601 4.3 34.4 1.0 NZ C:LYS163 4.4 35.0 1.0 N C:GLY94 4.5 32.4 1.0 F3 C:AF3603 4.5 35.9 1.0 OG1 C:THR162 4.7 34.5 1.0 CA C:ASP93 4.7 34.0 1.0 C5' C:ADP601 4.7 34.4 1.0 O3A C:ADP601 4.8 34.4 1.0 C C:SER159 4.8 34.2 1.0 F1 C:AF3603 4.8 35.9 1.0

Magnesium binding site 4 out of 16 in the Human Tric-PHLP2A Complex in the Closed State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Human Tric-PHLP2A Complex in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:35.1 occ:1.00 OD1 D:ASP104 2.1 32.6 1.0 F2 D:AF3603 2.1 36.6 1.0 O3A D:ADP601 2.1 35.8 1.0 OD2 D:ASP104 2.3 32.6 1.0 O1A D:ADP601 2.4 35.8 1.0 CG D:ASP104 2.5 32.6 1.0 PA D:ADP601 2.7 35.8 1.0 O5' D:ADP601 3.4 35.8 1.0 PB D:ADP601 3.4 35.8 1.0 AL D:AF3603 3.6 36.6 1.0 O2B D:ADP601 3.7 35.8 1.0 O1B D:ADP601 3.8 35.8 1.0 CB D:ASP104 4.0 32.6 1.0 O D:SER170 4.0 36.8 1.0 O2A D:ADP601 4.1 35.8 1.0 F1 D:AF3603 4.3 36.6 1.0 CA D:SER170 4.4 36.8 1.0 N D:GLY105 4.5 33.4 1.0 O3B D:ADP601 4.6 35.8 1.0 OG D:SER173 4.6 37.8 1.0 C D:SER170 4.7 36.8 1.0 CA D:ASP104 4.7 32.6 1.0 F3 D:AF3603 4.7 36.6 1.0 C5' D:ADP601 4.7 35.8 1.0 NZ D:LYS174 4.9 37.3 1.0 CB D:SER170 4.9 36.8 1.0 O D:THR169 5.0 37.4 1.0

Magnesium binding site 5 out of 16 in the Human Tric-PHLP2A Complex in the Closed State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Human Tric-PHLP2A Complex in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:31.3 occ:1.00 F1 E:AF3603 2.0 34.4 1.0 O3A E:ADP601 2.1 33.0 1.0 OD1 E:ASP104 2.7 30.9 1.0 O1A E:ADP601 3.0 33.0 1.0 PB E:ADP601 3.1 33.0 1.0 PA E:ADP601 3.1 33.0 1.0 O1B E:ADP601 3.2 33.0 1.0 NZ E:LYS176 3.5 33.4 1.0 O3B E:ADP601 3.5 33.0 1.0 AL E:AF3603 3.5 34.4 1.0 CG E:ASP104 3.8 30.9 1.0 O5' E:ADP601 3.9 33.0 1.0 O E:THR172 4.0 33.6 1.0 OD2 E:ASP104 4.2 30.9 1.0 N E:GLY105 4.4 32.0 1.0 O2A E:ADP601 4.4 33.0 1.0 O2B E:ADP601 4.4 33.0 1.0 F2 E:AF3603 4.4 34.4 1.0 F3 E:AF3603 4.5 34.4 1.0 CG2 E:THR172 4.5 33.6 1.0 CA E:THR172 4.7 33.6 1.0 CE E:LYS176 4.8 33.4 1.0 OG E:SER175 4.8 34.1 1.0 C E:THR172 4.8 33.6 1.0 CB E:ASP104 4.9 30.9 1.0

Magnesium binding site 6 out of 16 in the Human Tric-PHLP2A Complex in the Closed State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Human Tric-PHLP2A Complex in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg602 b:32.4 occ:1.00 OD2 F:ASP90 2.0 33.8 1.0 OD1 F:ASP90 2.1 33.8 1.0 O1A F:ADP601 2.3 34.5 1.0 CG F:ASP90 2.3 33.8 1.0 O1B F:ADP601 2.6 34.5 1.0 F1 F:AF3603 3.3 33.9 1.0 PA F:ADP601 3.6 34.5 1.0 PB F:ADP601 3.8 34.5 1.0 CB F:ASP90 3.8 33.8 1.0 O3A F:ADP601 4.0 34.5 1.0 OG F:SER155 4.1 33.3 1.0 N F:GLY91 4.3 32.5 1.0 O3B F:ADP601 4.3 34.5 1.0 AL F:AF3603 4.4 33.9 1.0 F2 F:AF3603 4.4 33.9 1.0 NZ F:LYS159 4.4 34.2 1.0 CA F:ASP90 4.6 33.8 1.0 O2A F:ADP601 4.6 34.5 1.0 OD2 F:ASP393 4.7 35.4 1.0 O5' F:ADP601 4.7 34.5 1.0 CE F:LYS159 4.7 34.2 1.0 CG2 F:THR158 4.7 34.2 1.0 O F:SER155 4.8 33.3 1.0 CB F:SER155 4.8 33.3 1.0 CA F:SER155 4.9 33.3 1.0

Magnesium binding site 7 out of 16 in the Human Tric-PHLP2A Complex in the Closed State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Human Tric-PHLP2A Complex in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg602 b:33.5 occ:1.00 F3 G:AF3603 2.0 34.3 1.0 O3A G:ADP601 2.2 36.9 1.0 O1A G:ADP601 2.8 36.9 1.0 PA G:ADP601 3.1 36.9 1.0 PB G:ADP601 3.3 36.9 1.0 AL G:AF3603 3.4 34.3 1.0 O1B G:ADP601 3.4 36.9 1.0 CB G:ASP92 3.4 36.9 1.0 OD2 G:ASP92 3.6 36.9 1.0 O2B G:ADP601 3.8 36.9 1.0 CG G:ASP92 3.9 36.9 1.0 O5' G:ADP601 4.0 36.9 1.0 F1 G:AF3603 4.0 34.3 1.0 O2A G:ADP601 4.3 36.9 1.0 F2 G:AF3603 4.4 34.3 1.0 O G:ALA162 4.4 36.5 1.0 N G:GLY93 4.5 35.2 1.0 O3B G:ADP601 4.5 36.9 1.0 CE G:LYS166 4.6 33.9 1.0 OD2 G:ASP391 4.6 35.5 1.0 CA G:ASP92 4.6 36.9 1.0

Magnesium binding site 8 out of 16 in the Human Tric-PHLP2A Complex in the Closed State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Human Tric-PHLP2A Complex in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg602 b:34.3 occ:1.00 O1B H:ADP601 1.9 34.8 1.0 F2 H:AF3603 1.9 35.8 1.0 O1A H:ADP601 2.0 34.8 1.0 F3 H:AF3603 2.1 35.8 1.0 AL H:AF3603 2.1 35.8 1.0 O3B H:ADP601 2.3 34.8 1.0 PB H:ADP601 2.3 34.8 1.0 PA H:ADP601 2.4 34.8 1.0 O3A H:ADP601 2.7 34.8 1.0 O2A H:ADP601 2.8 34.8 1.0 OD1 H:ASP99 3.2 33.4 1.0 NZ H:LYS171 3.3 34.0 1.0 F1 H:AF3603 3.5 35.8 1.0 O2B H:ADP601 3.8 34.8 1.0 CG H:ASP99 3.9 33.4 1.0 O5' H:ADP601 4.0 34.8 1.0 OG H:SER170 4.0 34.0 1.0 OD2 H:ASP99 4.0 33.4 1.0 CE H:LYS171 4.4 34.0 1.0 CB H:SER170 4.6 34.0 1.0 C5' H:ADP601 4.8 34.8 1.0 N H:GLY100 4.8 31.9 1.0

Magnesium binding site 9 out of 16 in the Human Tric-PHLP2A Complex in the Closed State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Human Tric-PHLP2A Complex in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg602 b:42.3 occ:1.00 F1 I:AF3603 2.0 42.2 1.0 O3A I:ADP601 2.1 44.6 1.0 O3B I:ADP601 2.2 44.6 1.0 PB I:ADP601 2.5 44.6 1.0 O2B I:ADP601 2.8 44.6 1.0 OD1 I:ASP88 3.0 41.4 1.0 NZ I:LYS159 3.1 39.4 1.0 O2A I:ADP601 3.2 44.6 1.0 PA I:ADP601 3.2 44.6 1.0 AL I:AF3603 3.4 42.2 1.0 CG I:ASP88 3.5 41.4 1.0 OD2 I:ASP88 3.5 41.4 1.0 O1B I:ADP601 3.9 44.6 1.0 F3 I:AF3603 4.1 42.2 1.0 O1A I:ADP601 4.1 44.6 1.0 N I:GLY89 4.2 41.1 1.0 O5' I:ADP601 4.3 44.6 1.0 O I:SER155 4.4 42.3 1.0 CE I:LYS159 4.5 39.4 1.0 OG I:SER158 4.6 41.6 1.0 F2 I:AF3603 4.7 42.2 1.0 CB I:ASP88 4.7 41.4 1.0 CA I:ASP88 4.8 41.4 1.0

Magnesium binding site 10 out of 16 in the Human Tric-PHLP2A Complex in the Closed State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Human Tric-PHLP2A Complex in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg602 b:28.9 occ:1.00 O3B J:ADP601 2.1 30.4 1.0 F2 J:AF3603 2.2 29.6 1.0 O2A J:ADP601 2.5 30.4 1.0 OD2 J:ASP97 3.2 29.0 1.0 PB J:ADP601 3.4 30.4 1.0 PA J:ADP601 3.5 30.4 1.0 CB J:ASP97 3.6 29.0 1.0 O J:THR166 3.6 28.1 1.0 O3A J:ADP601 3.7 30.4 1.0 CG J:ASP97 3.8 29.0 1.0 AL J:AF3603 3.9 29.6 1.0 O5' J:ADP601 4.0 30.4 1.0 O2B J:ADP601 4.1 30.4 1.0 NZ J:LYS170 4.1 29.5 1.0 CA J:THR166 4.2 28.1 1.0 C J:THR166 4.4 28.1 1.0 CB J:THR166 4.5 28.1 1.0 O1B J:ADP601 4.6 30.4 1.0 F3 J:AF3603 4.7 29.6 1.0 N J:GLY98 4.7 27.7 1.0 CG2 J:THR166 4.8 28.1 1.0 CA J:ASP97 4.9 29.0 1.0 OD1 J:ASP97 4.9 29.0 1.0 O1A J:ADP601 4.9 30.4 1.0

S.H.Roh, J.Park, S.Lim, H.Kim. Human Tric-PHLP2A Complex in the Closed State To Be Published.