Magnesium in PDB 8i9o: Ecctps Filament Bound with Ctp, Nadh, Don
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Ecctps Filament Bound with Ctp, Nadh, Don
(pdb code 8i9o). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the
Ecctps Filament Bound with Ctp, Nadh, Don, PDB code: 8i9o:
Jump to Magnesium binding site number:
1;
2;
3;
4;
Magnesium binding site 1 out
of 4 in 8i9o
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Magnesium Binding Sites List in 8i9o
Magnesium binding site 1 out
of 4 in the Ecctps Filament Bound with Ctp, Nadh, Don
![](/pictures/MG/pdb/i9/8i9o-MG-sphere_01.jpg) Mono view
![](/pictures/MG/pdb/i9/8i9o-MG-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Ecctps Filament Bound with Ctp, Nadh, Don within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg704
b:5.6
occ:1.00
|
O2B
|
A:CTP703
|
2.1
|
25.9
|
1.0
|
O1A
|
A:CTP703
|
2.3
|
9.2
|
1.0
|
O1G
|
A:CTP703
|
2.8
|
23.1
|
1.0
|
PB
|
A:CTP703
|
3.4
|
10.5
|
1.0
|
PA
|
A:CTP703
|
3.6
|
12.5
|
1.0
|
O3A
|
A:CTP703
|
3.8
|
15.1
|
1.0
|
PG
|
A:CTP703
|
3.9
|
2.3
|
1.0
|
O3B
|
A:CTP703
|
4.0
|
14.9
|
1.0
|
NZ
|
A:LYS223
|
4.0
|
14.1
|
1.0
|
O5'
|
A:CTP703
|
4.3
|
17.2
|
1.0
|
NZ
|
A:LYS187
|
4.5
|
17.4
|
1.0
|
O2G
|
A:CTP703
|
4.5
|
17.1
|
1.0
|
O1B
|
A:CTP703
|
4.5
|
15.8
|
1.0
|
C5'
|
A:CTP703
|
4.7
|
13.9
|
1.0
|
O2A
|
A:CTP703
|
4.7
|
19.5
|
1.0
|
|
Magnesium binding site 2 out
of 4 in 8i9o
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Magnesium Binding Sites List in 8i9o
Magnesium binding site 2 out
of 4 in the Ecctps Filament Bound with Ctp, Nadh, Don
![](/pictures/MG/pdb/i9/8i9o-MG-sphere_02.jpg) Mono view
![](/pictures/MG/pdb/i9/8i9o-MG-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Ecctps Filament Bound with Ctp, Nadh, Don within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:5.4
occ:1.00
|
O2B
|
B:CTP601
|
2.1
|
25.7
|
1.0
|
O1A
|
B:CTP601
|
2.3
|
8.6
|
1.0
|
O1G
|
B:CTP601
|
2.8
|
22.1
|
1.0
|
PB
|
B:CTP601
|
3.4
|
10.7
|
1.0
|
PA
|
B:CTP601
|
3.6
|
11.8
|
1.0
|
O3A
|
B:CTP601
|
3.8
|
15.2
|
1.0
|
PG
|
B:CTP601
|
3.9
|
3.0
|
1.0
|
O3B
|
B:CTP601
|
4.0
|
15.2
|
1.0
|
NZ
|
B:LYS223
|
4.0
|
13.7
|
1.0
|
O5'
|
B:CTP601
|
4.3
|
17.4
|
1.0
|
NZ
|
B:LYS187
|
4.5
|
17.4
|
1.0
|
O2G
|
B:CTP601
|
4.5
|
17.2
|
1.0
|
O1B
|
B:CTP601
|
4.5
|
15.7
|
1.0
|
C5'
|
B:CTP601
|
4.7
|
14.1
|
1.0
|
O2A
|
B:CTP601
|
4.7
|
18.7
|
1.0
|
|
Magnesium binding site 3 out
of 4 in 8i9o
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Magnesium Binding Sites List in 8i9o
Magnesium binding site 3 out
of 4 in the Ecctps Filament Bound with Ctp, Nadh, Don
![](/pictures/MG/pdb/i9/8i9o-MG-sphere_03.jpg) Mono view
![](/pictures/MG/pdb/i9/8i9o-MG-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Ecctps Filament Bound with Ctp, Nadh, Don within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg704
b:4.6
occ:1.00
|
O2B
|
C:CTP703
|
2.1
|
25.5
|
1.0
|
O1A
|
C:CTP703
|
2.3
|
9.5
|
1.0
|
O1G
|
C:CTP703
|
2.8
|
22.3
|
1.0
|
PB
|
C:CTP703
|
3.4
|
10.6
|
1.0
|
PA
|
C:CTP703
|
3.6
|
12.7
|
1.0
|
O3A
|
C:CTP703
|
3.8
|
15.7
|
1.0
|
PG
|
C:CTP703
|
3.9
|
2.1
|
1.0
|
O3B
|
C:CTP703
|
4.0
|
15.7
|
1.0
|
NZ
|
C:LYS223
|
4.0
|
13.5
|
1.0
|
O5'
|
C:CTP703
|
4.3
|
17.1
|
1.0
|
NZ
|
C:LYS187
|
4.5
|
18.2
|
1.0
|
O2G
|
C:CTP703
|
4.5
|
16.4
|
1.0
|
O1B
|
C:CTP703
|
4.5
|
15.8
|
1.0
|
C5'
|
C:CTP703
|
4.7
|
13.8
|
1.0
|
O2A
|
C:CTP703
|
4.7
|
19.4
|
1.0
|
|
Magnesium binding site 4 out
of 4 in 8i9o
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Magnesium Binding Sites List in 8i9o
Magnesium binding site 4 out
of 4 in the Ecctps Filament Bound with Ctp, Nadh, Don
![](/pictures/MG/pdb/i9/8i9o-MG-sphere_04.jpg) Mono view
![](/pictures/MG/pdb/i9/8i9o-MG-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Ecctps Filament Bound with Ctp, Nadh, Don within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg602
b:4.9
occ:1.00
|
O2B
|
D:CTP601
|
2.1
|
25.6
|
1.0
|
O1A
|
D:CTP601
|
2.3
|
8.5
|
1.0
|
O1G
|
D:CTP601
|
2.8
|
22.5
|
1.0
|
PB
|
D:CTP601
|
3.4
|
10.5
|
1.0
|
PA
|
D:CTP601
|
3.6
|
11.2
|
1.0
|
O3A
|
D:CTP601
|
3.8
|
14.9
|
1.0
|
PG
|
D:CTP601
|
3.9
|
1.6
|
1.0
|
O3B
|
D:CTP601
|
4.0
|
14.5
|
1.0
|
NZ
|
D:LYS223
|
4.0
|
13.6
|
1.0
|
O5'
|
D:CTP601
|
4.3
|
17.5
|
1.0
|
NZ
|
D:LYS187
|
4.5
|
16.9
|
1.0
|
O2G
|
D:CTP601
|
4.5
|
16.6
|
1.0
|
O1B
|
D:CTP601
|
4.5
|
15.2
|
1.0
|
C5'
|
D:CTP601
|
4.7
|
14.0
|
1.0
|
O2A
|
D:CTP601
|
4.7
|
19.3
|
1.0
|
|
Reference:
C.J.Guo,
J.L.Liu.
Filamentation and Inhibition of Prokaryotic Ctp Synthase To Be Published.
Page generated: Fri Oct 4 09:17:54 2024
|