Magnesium in PDB 8ip4: Cryo-Em Structure of Hmrs-Highedta

The structure of Cryo-Em Structure of Hmrs-Highedta also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of Hmrs-Highedta (pdb code 8ip4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Hmrs-Highedta, PDB code: 8ip4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Hmrs-Highedta


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Hmrs-Highedta within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:133.2 occ:1.00 OD1 B:ASN362 3.9 152.5 1.0 O A:GLY360 3.9 146.7 1.0 O B:GLY360 4.0 145.9 1.0 OD1 A:ASN362 4.0 153.2 1.0 OD1 C:ASN362 4.0 152.4 1.0 O E:GLY360 4.1 147.8 1.0 OD1 E:ASN362 4.1 153.6 1.0 O C:GLY360 4.1 146.7 1.0 OD1 D:ASN362 4.1 152.8 1.0 O D:GLY360 4.2 147.1 1.0 CG B:ASN362 4.7 152.5 1.0 ND2 B:ASN362 4.7 152.5 1.0 CG A:ASN362 4.7 153.2 1.0 CG C:ASN362 4.7 152.4 1.0 ND2 C:ASN362 4.7 152.4 1.0 ND2 A:ASN362 4.8 153.2 1.0 CG E:ASN362 4.9 153.6 1.0 CG D:ASN362 4.9 152.8 1.0 ND2 D:ASN362 4.9 152.8 1.0 ND2 E:ASN362 4.9 153.6 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Hmrs-Highedta


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Hmrs-Highedta within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:92.6 occ:1.00 NH1 C:ARG332 4.3 85.0 1.0 NH1 B:ARG332 4.3 84.2 1.0 NH1 D:ARG332 4.3 85.3 1.0 NH1 A:ARG332 4.4 84.3 1.0 NH1 E:ARG332 4.4 84.3 1.0 OD2 C:ASP329 4.5 92.2 1.0 OD2 B:ASP329 4.5 92.3 1.0 OD2 D:ASP329 4.6 91.1 1.0 OD2 A:ASP329 4.6 91.5 1.0 OD2 E:ASP329 4.6 91.3 1.0 OD1 B:ASP329 4.6 92.3 1.0 OD1 C:ASP329 4.6 92.2 1.0 OD1 A:ASP329 4.7 91.5 1.0 OD1 D:ASP329 4.7 91.1 1.0 OD1 E:ASP329 4.7 91.3 1.0 CL A:CL502 4.8 85.9 1.0 CG C:ASP329 5.0 92.2 1.0 CG B:ASP329 5.0 92.3 1.0

M.Li, Y.Li, X.Yang, Y.Q.Shen. Molecular Basis of MG2+ Permeation Through the Mitochondrial Human MRS2 Channel To Be Published.