Magnesium in PDB 8ip5: Cryo-Em Structure of HMRS2-Lowedta

The structure of Cryo-Em Structure of HMRS2-Lowedta also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of HMRS2-Lowedta (pdb code 8ip5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of HMRS2-Lowedta, PDB code: 8ip5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of HMRS2-Lowedta


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of HMRS2-Lowedta within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:81.9 occ:1.00 O A:GLY360 3.8 98.6 1.0 O B:GLY360 3.8 98.0 1.0 O E:GLY360 3.9 98.6 1.0 O C:GLY360 3.9 98.0 1.0 OD1 B:ASN362 3.9 102.3 1.0 O D:GLY360 4.0 98.4 1.0 OD1 A:ASN362 4.0 101.8 1.0 OD1 C:ASN362 4.0 102.2 1.0 OD1 E:ASN362 4.1 102.1 1.0 OD1 D:ASN362 4.1 102.3 1.0 CG B:ASN362 4.8 102.3 1.0 CG C:ASN362 4.9 102.2 1.0 CG A:ASN362 4.9 101.8 1.0 ND2 B:ASN362 4.9 102.3 1.0 ND2 C:ASN362 4.9 102.2 1.0 C A:GLY360 4.9 98.6 1.0 C B:GLY360 5.0 98.0 1.0 ND2 A:ASN362 5.0 101.8 1.0 CG D:ASN362 5.0 102.3 1.0 CG E:ASN362 5.0 102.1 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of HMRS2-Lowedta


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of HMRS2-Lowedta within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg501 b:75.7 occ:1.00 OD2 D:ASP329 4.5 67.4 1.0 OD2 C:ASP329 4.5 67.5 1.0 OD2 E:ASP329 4.5 67.1 1.0 OD2 A:ASP329 4.6 66.8 1.0 OD2 B:ASP329 4.6 68.0 1.0 OD1 D:ASP329 4.6 67.4 1.0 NH1 D:ARG332 4.6 62.5 1.0 OD1 C:ASP329 4.6 67.5 1.0 NH1 E:ARG332 4.6 61.9 1.0 NH1 C:ARG332 4.6 62.3 1.0 OD1 E:ASP329 4.6 67.1 1.0 CL A:CL501 4.7 68.1 1.0 NH1 A:ARG332 4.7 62.3 1.0 OD1 B:ASP329 4.7 68.0 1.0 NH1 B:ARG332 4.7 62.1 1.0 OD1 A:ASP329 4.7 66.8 1.0 CG D:ASP329 5.0 67.4 1.0 CG C:ASP329 5.0 67.5 1.0

M.Li, Y.Li, X.Yang, Y.Q.Shen. Molecular Basis of MG2+ Permeation Through the Mitochondrial Human MRS2 Channel To Be Published.