Magnesium in PDB 8iqi: Structure of Full-Length Asfvprimpol in Complex-Form

The binding sites of Magnesium atom in the Structure of Full-Length Asfvprimpol in Complex-Form (pdb code 8iqi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Full-Length Asfvprimpol in Complex-Form, PDB code: 8iqi:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Structure of Full-Length Asfvprimpol in Complex-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Full-Length Asfvprimpol in Complex-Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:30.0 occ:1.00 O2B A:ANP1001 1.9 101.9 1.0 O2G A:ANP1001 2.0 101.9 1.0 OG1 A:THR643 2.0 76.2 1.0 O3G A:ANP1001 2.0 101.9 1.0 PG A:ANP1001 2.4 101.9 1.0 PB A:ANP1001 2.9 101.9 1.0 CB A:THR643 3.1 76.2 1.0 N3B A:ANP1001 3.1 101.9 1.0 O3A A:ANP1001 3.6 101.9 1.0 N A:THR643 3.7 76.2 1.0 O1G A:ANP1001 3.8 101.9 1.0 CA A:THR643 3.9 76.2 1.0 O1A A:ANP1001 4.1 101.9 1.0 PA A:ANP1001 4.1 101.9 1.0 OD1 B:ASN710 4.1 71.6 1.0 CG2 A:THR643 4.2 76.2 1.0 O1B A:ANP1001 4.2 101.9 1.0 O2A A:ANP1001 4.3 101.9 1.0 NH1 B:ARG752 4.3 63.8 1.0 NZ A:LYS642 4.4 72.7 1.0 CB A:LYS642 4.5 72.7 1.0 C A:LYS642 4.8 72.7 1.0 NH1 B:ARG751 4.9 71.0 1.0 CE A:LYS642 4.9 72.7 1.0 OE2 A:GLU692 5.0 85.8 1.0

Magnesium binding site 2 out of 4 in the Structure of Full-Length Asfvprimpol in Complex-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Full-Length Asfvprimpol in Complex-Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1002 b:30.0 occ:1.00 O2G B:ANP1001 1.6 88.9 1.0 OG1 B:THR643 2.3 56.9 1.0 O1B B:ANP1001 2.4 88.9 1.0 PG B:ANP1001 3.0 88.9 1.0 CB B:THR643 3.1 56.9 1.0 N3B B:ANP1001 3.3 88.9 1.0 PB B:ANP1001 3.4 88.9 1.0 ND2 C:ASN710 3.9 63.3 1.0 O1G B:ANP1001 3.9 88.9 1.0 O3G B:ANP1001 4.0 88.9 1.0 N B:THR643 4.0 56.9 1.0 CG2 B:THR643 4.1 56.9 1.0 CA B:THR643 4.1 56.9 1.0 O3A B:ANP1001 4.2 88.9 1.0 OE1 B:GLU692 4.2 66.7 1.0 NH1 C:ARG752 4.5 57.7 1.0 O1A B:ANP1001 4.5 88.9 1.0 OD1 C:ASN710 4.6 63.3 1.0 O2B B:ANP1001 4.7 88.9 1.0 CG C:ASN710 4.7 63.3 1.0 NZ B:LYS642 4.7 56.2 1.0 CE B:LYS642 4.7 56.2 1.0 PA B:ANP1001 4.7 88.9 1.0 O2A B:ANP1001 4.9 88.9 1.0

Magnesium binding site 3 out of 4 in the Structure of Full-Length Asfvprimpol in Complex-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Full-Length Asfvprimpol in Complex-Form within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1002 b:30.0 occ:1.00 O3G C:ANP1001 1.9 94.4 1.0 O2B C:ANP1001 2.0 94.4 1.0 OG1 C:THR643 2.0 62.0 1.0 PG C:ANP1001 2.9 94.4 1.0 CB C:THR643 3.0 62.0 1.0 PB C:ANP1001 3.1 94.4 1.0 O2G C:ANP1001 3.2 94.4 1.0 O1A C:ANP1001 3.3 94.4 1.0 N3B C:ANP1001 3.4 94.4 1.0 CG2 C:THR643 3.8 62.0 1.0 PA C:ANP1001 4.0 94.4 1.0 O3A C:ANP1001 4.0 94.4 1.0 CA C:THR643 4.2 62.0 1.0 O1G C:ANP1001 4.2 94.4 1.0 O2A C:ANP1001 4.2 94.4 1.0 OE2 C:GLU692 4.2 78.5 1.0 O1B C:ANP1001 4.3 94.4 1.0 N C:THR643 4.3 62.0 1.0 OD1 D:ASN710 4.4 75.2 1.0 NZ C:LYS642 4.8 65.3 1.0 CG C:LYS642 5.0 65.3 1.0

Magnesium binding site 4 out of 4 in the Structure of Full-Length Asfvprimpol in Complex-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Full-Length Asfvprimpol in Complex-Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1002 b:30.0 occ:1.00 O2G D:ANP1001 2.0 112.3 1.0 OG1 D:THR643 2.3 80.2 1.0 O2B D:ANP1001 2.5 112.3 1.0 PG D:ANP1001 2.9 112.3 1.0 N3B D:ANP1001 2.9 112.3 1.0 CB D:THR643 3.1 80.2 1.0 PB D:ANP1001 3.3 112.3 1.0 O1A D:ANP1001 3.5 112.3 1.0 O1G D:ANP1001 3.5 112.3 1.0 O3A D:ANP1001 4.0 112.3 1.0 N D:THR643 4.1 80.2 1.0 CG2 D:THR643 4.2 80.2 1.0 PA D:ANP1001 4.2 112.3 1.0 OE2 D:GLU693 4.2 116.1 1.0 CA D:THR643 4.2 80.2 1.0 O3G D:ANP1001 4.2 112.3 1.0 O2A D:ANP1001 4.5 112.3 1.0 O1B D:ANP1001 4.6 112.3 1.0 CD D:GLU693 4.6 116.1 1.0 CG D:GLU693 4.8 116.1 1.0 NH1 E:ARG752 4.8 101.0 1.0

Z.W.Shao, J.H.Gan. Structures and Implications of the Primpol Protein of African Swine Fever Virus To Be Published.