Magnesium in PDB 8iwh: Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Enzymatic activity of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
All present enzymatic activity of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana:
1.10.3.9;
Other elements in 8iwh:
The structure of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
191;
Binding sites:
The binding sites of Magnesium atom in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
(pdb code 8iwh). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 191 binding sites of Magnesium where determined in the
Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana, PDB code: 8iwh:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 191 in 8iwh
Go back to
Magnesium Binding Sites List in 8iwh
Magnesium binding site 1 out
of 191 in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:64.2
occ:1.00
|
MG
|
A:CLA404
|
0.0
|
64.2
|
1.0
|
NB
|
A:CLA404
|
2.0
|
64.2
|
1.0
|
ND
|
A:CLA404
|
2.0
|
64.2
|
1.0
|
NC
|
A:CLA404
|
2.1
|
64.2
|
1.0
|
NA
|
A:CLA404
|
2.1
|
64.2
|
1.0
|
C4D
|
A:CLA404
|
2.9
|
64.2
|
1.0
|
C1B
|
A:CLA404
|
3.0
|
64.2
|
1.0
|
CE1
|
A:HIS198
|
3.0
|
65.1
|
1.0
|
C4A
|
A:CLA404
|
3.0
|
64.2
|
1.0
|
C4B
|
A:CLA404
|
3.1
|
64.2
|
1.0
|
C1C
|
A:CLA404
|
3.1
|
64.2
|
1.0
|
C4C
|
A:CLA404
|
3.1
|
64.2
|
1.0
|
C1D
|
A:CLA404
|
3.1
|
64.2
|
1.0
|
C1A
|
A:CLA404
|
3.1
|
64.2
|
1.0
|
CHB
|
A:CLA404
|
3.4
|
64.2
|
1.0
|
CHC
|
A:CLA404
|
3.4
|
64.2
|
1.0
|
CHA
|
A:CLA404
|
3.5
|
64.2
|
1.0
|
CHD
|
A:CLA404
|
3.5
|
64.2
|
1.0
|
NE2
|
A:HIS198
|
3.8
|
65.1
|
1.0
|
ND1
|
A:HIS198
|
4.0
|
65.1
|
1.0
|
C3D
|
A:CLA404
|
4.2
|
64.2
|
1.0
|
C2B
|
A:CLA404
|
4.3
|
64.2
|
1.0
|
CAB
|
D:CLA405
|
4.3
|
63.8
|
1.0
|
C3B
|
A:CLA404
|
4.3
|
64.2
|
1.0
|
C2C
|
A:CLA404
|
4.3
|
64.2
|
1.0
|
C2D
|
A:CLA404
|
4.3
|
64.2
|
1.0
|
C3C
|
A:CLA404
|
4.4
|
64.2
|
1.0
|
C3A
|
A:CLA404
|
4.4
|
64.2
|
1.0
|
C2A
|
A:CLA404
|
4.4
|
64.2
|
1.0
|
SD
|
A:MET183
|
4.8
|
64.4
|
1.0
|
CBD
|
A:CLA404
|
4.9
|
64.2
|
1.0
|
|
Magnesium binding site 2 out
of 191 in 8iwh
Go back to
Magnesium Binding Sites List in 8iwh
Magnesium binding site 2 out
of 191 in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:65.2
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
65.2
|
1.0
|
NB
|
A:CLA405
|
2.0
|
65.2
|
1.0
|
ND
|
A:CLA405
|
2.0
|
65.2
|
1.0
|
NC
|
A:CLA405
|
2.1
|
65.2
|
1.0
|
NA
|
A:CLA405
|
2.1
|
65.2
|
1.0
|
C4D
|
A:CLA405
|
2.9
|
65.2
|
1.0
|
C1B
|
A:CLA405
|
3.0
|
65.2
|
1.0
|
C4A
|
A:CLA405
|
3.0
|
65.2
|
1.0
|
C4B
|
A:CLA405
|
3.1
|
65.2
|
1.0
|
C1C
|
A:CLA405
|
3.1
|
65.2
|
1.0
|
C4C
|
A:CLA405
|
3.1
|
65.2
|
1.0
|
C1A
|
A:CLA405
|
3.1
|
65.2
|
1.0
|
C1D
|
A:CLA405
|
3.1
|
65.2
|
1.0
|
CHB
|
A:CLA405
|
3.4
|
65.2
|
1.0
|
CHC
|
A:CLA405
|
3.4
|
65.2
|
1.0
|
CHA
|
A:CLA405
|
3.5
|
65.2
|
1.0
|
CHD
|
A:CLA405
|
3.5
|
65.2
|
1.0
|
CBB
|
A:PHO407
|
4.1
|
69.0
|
1.0
|
C3D
|
A:CLA405
|
4.2
|
65.2
|
1.0
|
C2B
|
A:CLA405
|
4.3
|
65.2
|
1.0
|
C3B
|
A:CLA405
|
4.3
|
65.2
|
1.0
|
C2C
|
A:CLA405
|
4.3
|
65.2
|
1.0
|
C2D
|
A:CLA405
|
4.3
|
65.2
|
1.0
|
C3C
|
A:CLA405
|
4.4
|
65.2
|
1.0
|
C3A
|
A:CLA405
|
4.4
|
65.2
|
1.0
|
C2A
|
A:CLA405
|
4.4
|
65.2
|
1.0
|
CBA
|
A:CLA405
|
4.9
|
65.2
|
1.0
|
CBD
|
A:CLA405
|
4.9
|
65.2
|
1.0
|
|
Magnesium binding site 3 out
of 191 in 8iwh
Go back to
Magnesium Binding Sites List in 8iwh
Magnesium binding site 3 out
of 191 in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg408
b:70.9
occ:1.00
|
MG
|
A:CLA408
|
0.0
|
70.9
|
1.0
|
NE2
|
A:HIS118
|
1.9
|
67.2
|
1.0
|
NB
|
A:CLA408
|
2.0
|
70.9
|
1.0
|
ND
|
A:CLA408
|
2.0
|
70.9
|
1.0
|
NA
|
A:CLA408
|
2.1
|
70.9
|
1.0
|
NC
|
A:CLA408
|
2.1
|
70.9
|
1.0
|
CE1
|
A:HIS118
|
2.6
|
67.2
|
1.0
|
C4D
|
A:CLA408
|
2.9
|
70.9
|
1.0
|
C1B
|
A:CLA408
|
3.0
|
70.9
|
1.0
|
C4A
|
A:CLA408
|
3.0
|
70.9
|
1.0
|
C4B
|
A:CLA408
|
3.0
|
70.9
|
1.0
|
C1C
|
A:CLA408
|
3.1
|
70.9
|
1.0
|
C1A
|
A:CLA408
|
3.1
|
70.9
|
1.0
|
CD2
|
A:HIS118
|
3.1
|
67.2
|
1.0
|
C4C
|
A:CLA408
|
3.1
|
70.9
|
1.0
|
C1D
|
A:CLA408
|
3.2
|
70.9
|
1.0
|
CHB
|
A:CLA408
|
3.4
|
70.9
|
1.0
|
CHC
|
A:CLA408
|
3.4
|
70.9
|
1.0
|
CHA
|
A:CLA408
|
3.5
|
70.9
|
1.0
|
CHD
|
A:CLA408
|
3.5
|
70.9
|
1.0
|
ND1
|
A:HIS118
|
3.8
|
67.2
|
1.0
|
CG
|
A:HIS118
|
4.1
|
67.2
|
1.0
|
C3D
|
A:CLA408
|
4.3
|
70.9
|
1.0
|
C2B
|
A:CLA408
|
4.3
|
70.9
|
1.0
|
C3B
|
A:CLA408
|
4.3
|
70.9
|
1.0
|
C2C
|
A:CLA408
|
4.3
|
70.9
|
1.0
|
C2D
|
A:CLA408
|
4.4
|
70.9
|
1.0
|
C3C
|
A:CLA408
|
4.4
|
70.9
|
1.0
|
C3A
|
A:CLA408
|
4.4
|
70.9
|
1.0
|
C2A
|
A:CLA408
|
4.4
|
70.9
|
1.0
|
CG2
|
I:VAL12
|
4.5
|
69.0
|
1.0
|
CG1
|
I:VAL8
|
4.8
|
73.8
|
1.0
|
CBA
|
A:CLA408
|
4.8
|
70.9
|
1.0
|
CBD
|
A:CLA408
|
4.9
|
70.9
|
1.0
|
|
Magnesium binding site 4 out
of 191 in 8iwh
Go back to
Magnesium Binding Sites List in 8iwh
Magnesium binding site 4 out
of 191 in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:91.1
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
91.1
|
1.0
|
NB
|
B:CLA601
|
2.0
|
91.1
|
1.0
|
ND
|
B:CLA601
|
2.0
|
91.1
|
1.0
|
NC
|
B:CLA601
|
2.1
|
91.1
|
1.0
|
NA
|
B:CLA601
|
2.1
|
91.1
|
1.0
|
C4D
|
B:CLA601
|
2.9
|
91.1
|
1.0
|
C1B
|
B:CLA601
|
3.0
|
91.1
|
1.0
|
C4A
|
B:CLA601
|
3.0
|
91.1
|
1.0
|
C4B
|
B:CLA601
|
3.1
|
91.1
|
1.0
|
C1C
|
B:CLA601
|
3.1
|
91.1
|
1.0
|
C4C
|
B:CLA601
|
3.1
|
91.1
|
1.0
|
C1A
|
B:CLA601
|
3.1
|
91.1
|
1.0
|
C1D
|
B:CLA601
|
3.2
|
91.1
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
91.1
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
91.1
|
1.0
|
CHA
|
B:CLA601
|
3.5
|
91.1
|
1.0
|
CHD
|
B:CLA601
|
3.5
|
91.1
|
1.0
|
C30
|
0:LMG314
|
3.7
|
113.2
|
1.0
|
C31
|
0:LMG314
|
4.0
|
113.2
|
1.0
|
C33
|
0:LMG314
|
4.1
|
113.2
|
1.0
|
C3D
|
B:CLA601
|
4.3
|
91.1
|
1.0
|
C2B
|
B:CLA601
|
4.3
|
91.1
|
1.0
|
C3B
|
B:CLA601
|
4.3
|
91.1
|
1.0
|
C2C
|
B:CLA601
|
4.3
|
91.1
|
1.0
|
C2D
|
B:CLA601
|
4.4
|
91.1
|
1.0
|
C3C
|
B:CLA601
|
4.4
|
91.1
|
1.0
|
C3A
|
B:CLA601
|
4.4
|
91.1
|
1.0
|
C2A
|
B:CLA601
|
4.5
|
91.1
|
1.0
|
O
|
B:TRP185
|
4.5
|
79.7
|
1.0
|
C32
|
0:LMG314
|
4.7
|
113.2
|
1.0
|
C34
|
0:LMG314
|
4.7
|
113.2
|
1.0
|
CE2
|
B:PHE190
|
4.9
|
76.8
|
1.0
|
CBD
|
B:CLA601
|
4.9
|
91.1
|
1.0
|
|
Magnesium binding site 5 out
of 191 in 8iwh
Go back to
Magnesium Binding Sites List in 8iwh
Magnesium binding site 5 out
of 191 in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:71.0
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
71.0
|
1.0
|
ND1
|
B:HIS201
|
1.9
|
71.6
|
1.0
|
NB
|
B:CLA602
|
2.0
|
71.0
|
1.0
|
ND
|
B:CLA602
|
2.0
|
71.0
|
1.0
|
NA
|
B:CLA602
|
2.1
|
71.0
|
1.0
|
NC
|
B:CLA602
|
2.1
|
71.0
|
1.0
|
CE1
|
B:HIS201
|
2.2
|
71.6
|
1.0
|
C4D
|
B:CLA602
|
2.9
|
71.0
|
1.0
|
C1B
|
B:CLA602
|
3.0
|
71.0
|
1.0
|
C4A
|
B:CLA602
|
3.0
|
71.0
|
1.0
|
C4B
|
B:CLA602
|
3.0
|
71.0
|
1.0
|
C1C
|
B:CLA602
|
3.1
|
71.0
|
1.0
|
C4C
|
B:CLA602
|
3.1
|
71.0
|
1.0
|
C1A
|
B:CLA602
|
3.1
|
71.0
|
1.0
|
C1D
|
B:CLA602
|
3.2
|
71.0
|
1.0
|
CG
|
B:HIS201
|
3.2
|
71.6
|
1.0
|
CHB
|
B:CLA602
|
3.4
|
71.0
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
71.0
|
1.0
|
NE2
|
B:HIS201
|
3.5
|
71.6
|
1.0
|
CHA
|
B:CLA602
|
3.5
|
71.0
|
1.0
|
CHD
|
B:CLA602
|
3.5
|
71.0
|
1.0
|
CD2
|
B:HIS201
|
3.9
|
71.6
|
1.0
|
CZ
|
H:PHE41
|
4.0
|
74.3
|
1.0
|
CB
|
B:HIS201
|
4.1
|
71.6
|
1.0
|
C3D
|
B:CLA602
|
4.2
|
71.0
|
1.0
|
C2B
|
B:CLA602
|
4.3
|
71.0
|
1.0
|
C3B
|
B:CLA602
|
4.3
|
71.0
|
1.0
|
C2C
|
B:CLA602
|
4.3
|
71.0
|
1.0
|
C2D
|
B:CLA602
|
4.4
|
71.0
|
1.0
|
C3C
|
B:CLA602
|
4.4
|
71.0
|
1.0
|
C3A
|
B:CLA602
|
4.4
|
71.0
|
1.0
|
C2A
|
B:CLA602
|
4.4
|
71.0
|
1.0
|
CE2
|
H:PHE41
|
4.6
|
74.3
|
1.0
|
CA
|
B:HIS201
|
4.7
|
71.6
|
1.0
|
CE1
|
B:PHE190
|
4.9
|
76.8
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
71.0
|
1.0
|
|
Magnesium binding site 6 out
of 191 in 8iwh
Go back to
Magnesium Binding Sites List in 8iwh
Magnesium binding site 6 out
of 191 in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:70.6
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
70.6
|
1.0
|
NE2
|
B:HIS202
|
1.9
|
71.2
|
1.0
|
NB
|
B:CLA603
|
2.0
|
70.6
|
1.0
|
ND
|
B:CLA603
|
2.0
|
70.6
|
1.0
|
NC
|
B:CLA603
|
2.1
|
70.6
|
1.0
|
NA
|
B:CLA603
|
2.1
|
70.6
|
1.0
|
CE1
|
B:HIS202
|
2.7
|
71.2
|
1.0
|
C4D
|
B:CLA603
|
2.9
|
70.6
|
1.0
|
C1B
|
B:CLA603
|
3.0
|
70.6
|
1.0
|
C4A
|
B:CLA603
|
3.0
|
70.6
|
1.0
|
C4B
|
B:CLA603
|
3.0
|
70.6
|
1.0
|
C1C
|
B:CLA603
|
3.1
|
70.6
|
1.0
|
CD2
|
B:HIS202
|
3.1
|
71.2
|
1.0
|
C4C
|
B:CLA603
|
3.1
|
70.6
|
1.0
|
C1D
|
B:CLA603
|
3.1
|
70.6
|
1.0
|
C1A
|
B:CLA603
|
3.1
|
70.6
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
70.6
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
70.6
|
1.0
|
CHA
|
B:CLA603
|
3.5
|
70.6
|
1.0
|
CHD
|
B:CLA603
|
3.5
|
70.6
|
1.0
|
ND1
|
B:HIS202
|
3.9
|
71.2
|
1.0
|
CG
|
B:HIS202
|
4.1
|
71.2
|
1.0
|
C3D
|
B:CLA603
|
4.2
|
70.6
|
1.0
|
C2B
|
B:CLA603
|
4.3
|
70.6
|
1.0
|
C3B
|
B:CLA603
|
4.3
|
70.6
|
1.0
|
C2C
|
B:CLA603
|
4.3
|
70.6
|
1.0
|
C2D
|
B:CLA603
|
4.3
|
70.6
|
1.0
|
C3C
|
B:CLA603
|
4.4
|
70.6
|
1.0
|
C3A
|
B:CLA603
|
4.4
|
70.6
|
1.0
|
C6
|
B:CLA605
|
4.4
|
69.7
|
1.0
|
C2A
|
B:CLA603
|
4.5
|
70.6
|
1.0
|
C7
|
B:CLA605
|
4.7
|
69.7
|
1.0
|
C9
|
B:CLA605
|
4.7
|
69.7
|
1.0
|
CBD
|
B:CLA603
|
4.9
|
70.6
|
1.0
|
CBA
|
B:CLA603
|
5.0
|
70.6
|
1.0
|
|
Magnesium binding site 7 out
of 191 in 8iwh
Go back to
Magnesium Binding Sites List in 8iwh
Magnesium binding site 7 out
of 191 in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:69.7
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
69.7
|
1.0
|
NE2
|
B:HIS455
|
1.9
|
70.2
|
1.0
|
NB
|
B:CLA604
|
2.0
|
69.7
|
1.0
|
ND
|
B:CLA604
|
2.0
|
69.7
|
1.0
|
NC
|
B:CLA604
|
2.1
|
69.7
|
1.0
|
NA
|
B:CLA604
|
2.1
|
69.7
|
1.0
|
CE1
|
B:HIS455
|
2.8
|
70.2
|
1.0
|
C4D
|
B:CLA604
|
2.9
|
69.7
|
1.0
|
C1B
|
B:CLA604
|
3.0
|
69.7
|
1.0
|
CD2
|
B:HIS455
|
3.0
|
70.2
|
1.0
|
C4A
|
B:CLA604
|
3.0
|
69.7
|
1.0
|
C4B
|
B:CLA604
|
3.1
|
69.7
|
1.0
|
C1C
|
B:CLA604
|
3.1
|
69.7
|
1.0
|
C4C
|
B:CLA604
|
3.1
|
69.7
|
1.0
|
C1D
|
B:CLA604
|
3.1
|
69.7
|
1.0
|
C1A
|
B:CLA604
|
3.2
|
69.7
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
69.7
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
69.7
|
1.0
|
CHA
|
B:CLA604
|
3.5
|
69.7
|
1.0
|
C14
|
B:CLA612
|
3.5
|
95.8
|
1.0
|
CHD
|
B:CLA604
|
3.5
|
69.7
|
1.0
|
ND1
|
B:HIS455
|
3.9
|
70.2
|
1.0
|
CG
|
B:HIS455
|
4.1
|
70.2
|
1.0
|
C3D
|
B:CLA604
|
4.2
|
69.7
|
1.0
|
C2B
|
B:CLA604
|
4.3
|
69.7
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
69.7
|
1.0
|
C2C
|
B:CLA604
|
4.3
|
69.7
|
1.0
|
C2D
|
B:CLA604
|
4.3
|
69.7
|
1.0
|
C3C
|
B:CLA604
|
4.4
|
69.7
|
1.0
|
C3A
|
B:CLA604
|
4.4
|
69.7
|
1.0
|
C2A
|
B:CLA604
|
4.5
|
69.7
|
1.0
|
C13
|
B:CLA612
|
4.8
|
95.8
|
1.0
|
CBD
|
B:CLA604
|
4.9
|
69.7
|
1.0
|
|
Magnesium binding site 8 out
of 191 in 8iwh
Go back to
Magnesium Binding Sites List in 8iwh
Magnesium binding site 8 out
of 191 in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:69.7
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
69.7
|
1.0
|
NE2
|
B:HIS100
|
1.9
|
73.2
|
1.0
|
NB
|
B:CLA605
|
2.0
|
69.7
|
1.0
|
ND
|
B:CLA605
|
2.0
|
69.7
|
1.0
|
NC
|
B:CLA605
|
2.1
|
69.7
|
1.0
|
NA
|
B:CLA605
|
2.1
|
69.7
|
1.0
|
CE1
|
B:HIS100
|
2.6
|
73.2
|
1.0
|
C4D
|
B:CLA605
|
2.9
|
69.7
|
1.0
|
C1B
|
B:CLA605
|
3.0
|
69.7
|
1.0
|
C4B
|
B:CLA605
|
3.0
|
69.7
|
1.0
|
C4A
|
B:CLA605
|
3.1
|
69.7
|
1.0
|
C1C
|
B:CLA605
|
3.1
|
69.7
|
1.0
|
CD2
|
B:HIS100
|
3.1
|
73.2
|
1.0
|
C4C
|
B:CLA605
|
3.1
|
69.7
|
1.0
|
C1D
|
B:CLA605
|
3.1
|
69.7
|
1.0
|
C1A
|
B:CLA605
|
3.2
|
69.7
|
1.0
|
CHB
|
B:CLA605
|
3.4
|
69.7
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
69.7
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
69.7
|
1.0
|
CHD
|
B:CLA605
|
3.5
|
69.7
|
1.0
|
ND1
|
B:HIS100
|
3.9
|
73.2
|
1.0
|
CG
|
B:HIS100
|
4.1
|
73.2
|
1.0
|
C3D
|
B:CLA605
|
4.2
|
69.7
|
1.0
|
C2B
|
B:CLA605
|
4.3
|
69.7
|
1.0
|
C3B
|
B:CLA605
|
4.3
|
69.7
|
1.0
|
C2C
|
B:CLA605
|
4.3
|
69.7
|
1.0
|
C2D
|
B:CLA605
|
4.4
|
69.7
|
1.0
|
C3C
|
B:CLA605
|
4.4
|
69.7
|
1.0
|
C1
|
B:CLA604
|
4.4
|
69.7
|
1.0
|
C3A
|
B:CLA605
|
4.4
|
69.7
|
1.0
|
C4
|
B:CLA604
|
4.4
|
69.7
|
1.0
|
C2A
|
B:CLA605
|
4.5
|
69.7
|
1.0
|
C2
|
B:CLA604
|
4.8
|
69.7
|
1.0
|
C3
|
B:CLA604
|
4.8
|
69.7
|
1.0
|
CBD
|
B:CLA605
|
4.9
|
69.7
|
1.0
|
CBA
|
B:CLA605
|
4.9
|
69.7
|
1.0
|
|
Magnesium binding site 9 out
of 191 in 8iwh
Go back to
Magnesium Binding Sites List in 8iwh
Magnesium binding site 9 out
of 191 in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:77.0
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
77.0
|
1.0
|
NB
|
B:CLA606
|
2.0
|
77.0
|
1.0
|
ND
|
B:CLA606
|
2.0
|
77.0
|
1.0
|
NC
|
B:CLA606
|
2.1
|
77.0
|
1.0
|
NA
|
B:CLA606
|
2.1
|
77.0
|
1.0
|
CD2
|
B:HIS157
|
2.3
|
74.7
|
1.0
|
C4D
|
B:CLA606
|
2.9
|
77.0
|
1.0
|
C1B
|
B:CLA606
|
3.0
|
77.0
|
1.0
|
NE2
|
B:HIS157
|
3.0
|
74.7
|
1.0
|
C4B
|
B:CLA606
|
3.0
|
77.0
|
1.0
|
C4A
|
B:CLA606
|
3.1
|
77.0
|
1.0
|
C1C
|
B:CLA606
|
3.1
|
77.0
|
1.0
|
C1A
|
B:CLA606
|
3.1
|
77.0
|
1.0
|
C4C
|
B:CLA606
|
3.1
|
77.0
|
1.0
|
C1D
|
B:CLA606
|
3.1
|
77.0
|
1.0
|
CHB
|
B:CLA606
|
3.4
|
77.0
|
1.0
|
CG
|
B:HIS157
|
3.4
|
74.7
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
77.0
|
1.0
|
CHA
|
B:CLA606
|
3.4
|
77.0
|
1.0
|
CHD
|
B:CLA606
|
3.5
|
77.0
|
1.0
|
C13
|
B:LMG621
|
4.0
|
85.7
|
1.0
|
CB
|
B:HIS157
|
4.1
|
74.7
|
1.0
|
C3D
|
B:CLA606
|
4.2
|
77.0
|
1.0
|
CE1
|
B:HIS157
|
4.3
|
74.7
|
1.0
|
C2B
|
B:CLA606
|
4.3
|
77.0
|
1.0
|
C3B
|
B:CLA606
|
4.3
|
77.0
|
1.0
|
C2C
|
B:CLA606
|
4.3
|
77.0
|
1.0
|
C2D
|
B:CLA606
|
4.3
|
77.0
|
1.0
|
C3C
|
B:CLA606
|
4.4
|
77.0
|
1.0
|
C3A
|
B:CLA606
|
4.4
|
77.0
|
1.0
|
ND1
|
B:HIS157
|
4.4
|
74.7
|
1.0
|
C2A
|
B:CLA606
|
4.4
|
77.0
|
1.0
|
C14
|
B:LMG621
|
4.6
|
85.7
|
1.0
|
C12
|
B:LMG621
|
4.7
|
85.7
|
1.0
|
C11
|
B:LMG621
|
4.9
|
85.7
|
1.0
|
CBD
|
B:CLA606
|
4.9
|
77.0
|
1.0
|
CBA
|
B:CLA606
|
5.0
|
77.0
|
1.0
|
|
Magnesium binding site 10 out
of 191 in 8iwh
Go back to
Magnesium Binding Sites List in 8iwh
Magnesium binding site 10 out
of 191 in the Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure and Characteristics of A Photosystem II Supercomplex Containing Monomeric Lhcx and Dimeric Fcpii Antennae From the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg607
b:76.2
occ:1.00
|
MG
|
B:CLA607
|
0.0
|
76.2
|
1.0
|
NB
|
B:CLA607
|
2.0
|
76.2
|
1.0
|
ND
|
B:CLA607
|
2.0
|
76.2
|
1.0
|
NC
|
B:CLA607
|
2.1
|
76.2
|
1.0
|
NA
|
B:CLA607
|
2.1
|
76.2
|
1.0
|
C4D
|
B:CLA607
|
2.9
|
76.2
|
1.0
|
C1B
|
B:CLA607
|
3.0
|
76.2
|
1.0
|
C4A
|
B:CLA607
|
3.0
|
76.2
|
1.0
|
C4B
|
B:CLA607
|
3.1
|
76.2
|
1.0
|
C1C
|
B:CLA607
|
3.1
|
76.2
|
1.0
|
C4C
|
B:CLA607
|
3.1
|
76.2
|
1.0
|
C1D
|
B:CLA607
|
3.1
|
76.2
|
1.0
|
C1A
|
B:CLA607
|
3.1
|
76.2
|
1.0
|
CHB
|
B:CLA607
|
3.4
|
76.2
|
1.0
|
CHC
|
B:CLA607
|
3.4
|
76.2
|
1.0
|
CHA
|
B:CLA607
|
3.5
|
76.2
|
1.0
|
CHD
|
B:CLA607
|
3.5
|
76.2
|
1.0
|
C15
|
B:LMG620
|
3.6
|
82.7
|
1.0
|
C14
|
B:LMG620
|
3.9
|
82.7
|
1.0
|
C3D
|
B:CLA607
|
4.3
|
76.2
|
1.0
|
C2B
|
B:CLA607
|
4.3
|
76.2
|
1.0
|
C3B
|
B:CLA607
|
4.3
|
76.2
|
1.0
|
C2C
|
B:CLA607
|
4.3
|
76.2
|
1.0
|
C2D
|
B:CLA607
|
4.3
|
76.2
|
1.0
|
C3C
|
B:CLA607
|
4.4
|
76.2
|
1.0
|
C3A
|
B:CLA607
|
4.4
|
76.2
|
1.0
|
C2A
|
B:CLA607
|
4.5
|
76.2
|
1.0
|
C17
|
B:LMG620
|
4.6
|
82.7
|
1.0
|
CE
|
B:MET37
|
4.6
|
75.2
|
1.0
|
C16
|
B:LMG620
|
4.6
|
82.7
|
1.0
|
C13
|
B:LMG620
|
4.8
|
82.7
|
1.0
|
CBD
|
B:CLA607
|
4.9
|
76.2
|
1.0
|
C18
|
B:LMG620
|
5.0
|
82.7
|
1.0
|
|
Reference:
Y.Feng,
Z.H.Li,
X.Y.Li,
L.Shen,
X.Y.Liu,
C.Zhou,
J.Y.Zhang,
M.Sang,
G.Y.Han,
W.Q.Yang,
T.Kuang,
W.D.Wang,
J.R.Shen.
Structure of A Diatom Photosystem II Supercomplex Containing A Member of Lhcx Family and Dimeric Fcpii Sci Adv 2023.
ISSN: ESSN 2375-2548
DOI: 10.1126/SCIADV.ADI8446
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