Magnesium in PDB 8iza: Cryo-Em Structure of Atp-Bound HMRP4

All present enzymatic activity of Cryo-Em Structure of Atp-Bound HMRP4:
7.6.2.2; 7.6.2.3;

The binding sites of Magnesium atom in the Cryo-Em Structure of Atp-Bound HMRP4 (pdb code 8iza). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Atp-Bound HMRP4, PDB code: 8iza:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Atp-Bound HMRP4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Atp-Bound HMRP4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1403 b:67.9 occ:1.00 O2B A:ATP1401 2.1 76.2 1.0 OE1 A:GLN480 2.1 64.1 1.0 O1G A:ATP1401 2.5 76.2 1.0 NE2 A:GLN480 2.6 64.1 1.0 CD A:GLN480 2.6 64.1 1.0 PB A:ATP1401 3.2 76.2 1.0 PG A:ATP1401 3.5 76.2 1.0 O1B A:ATP1401 3.6 76.2 1.0 O3B A:ATP1401 3.7 76.2 1.0 O2G A:ATP1401 3.8 76.2 1.0 CG A:GLN480 4.1 64.1 1.0 OD1 A:ASP559 4.2 64.8 1.0 CB A:SER452 4.4 65.2 1.0 O3A A:ATP1401 4.6 76.2 1.0 CG2 A:VAL1179 4.7 76.8 1.0 O2A A:ATP1401 4.7 76.2 1.0 CB A:GLN480 4.7 64.1 1.0 OD2 A:ASP559 4.7 64.8 1.0 CG A:ASP559 4.8 64.8 1.0 CB A:VAL1179 4.8 76.8 1.0 O3G A:ATP1401 4.9 76.2 1.0 OD1 A:ASN1206 5.0 78.3 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Atp-Bound HMRP4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Atp-Bound HMRP4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1404 b:70.7 occ:1.00 O2B A:ATP1402 2.2 74.7 1.0 OE1 A:GLN1122 2.4 74.2 1.0 O3G A:ATP1402 2.7 74.7 1.0 OG A:SER1082 2.8 69.5 1.0 CD A:GLN1122 2.8 74.2 1.0 NE2 A:GLN1122 3.2 74.2 1.0 PB A:ATP1402 3.2 74.7 1.0 OD1 A:ASP1201 3.4 72.0 1.0 O1B A:ATP1402 3.6 74.7 1.0 PG A:ATP1402 3.6 74.7 1.0 O1G A:ATP1402 3.7 74.7 1.0 O3B A:ATP1402 3.8 74.7 1.0 CG A:GLN1122 3.9 74.2 1.0 OD2 A:ASP1201 4.0 72.0 1.0 CB A:SER1082 4.0 69.5 1.0 CG A:ASP1201 4.0 72.0 1.0 CG A:GLN1202 4.3 75.8 1.0 CB A:GLN1122 4.4 74.2 1.0 OG A:SER536 4.6 73.3 1.0 O3A A:ATP1402 4.6 74.7 1.0 O1A A:ATP1402 4.8 74.7 1.0 N A:SER1082 4.8 69.5 1.0 CA A:SER1082 4.9 69.5 1.0

Z.M.Liu, Y.Huang. Cryo-Em Structure of Atp-Bound HMRP4 To Be Published.