Magnesium in PDB 8j0d: Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Magnesium Binding Sites:
Magnesium binding site 1 out
of 45 in 8j0d
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Magnesium Binding Sites List in 8j0d
Magnesium binding site 1 out
of 45 in the Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg601
b:79.2
occ:1.00
|
MG
|
3:CLA601
|
0.0
|
79.2
|
1.0
|
NB
|
3:CLA601
|
2.0
|
79.2
|
1.0
|
ND
|
3:CLA601
|
2.0
|
79.2
|
1.0
|
NC
|
3:CLA601
|
2.1
|
79.2
|
1.0
|
NA
|
3:CLA601
|
2.1
|
79.2
|
1.0
|
C4D
|
3:CLA601
|
2.9
|
79.2
|
1.0
|
C1B
|
3:CLA601
|
3.0
|
79.2
|
1.0
|
C4A
|
3:CLA601
|
3.0
|
79.2
|
1.0
|
C4B
|
3:CLA601
|
3.1
|
79.2
|
1.0
|
C1C
|
3:CLA601
|
3.1
|
79.2
|
1.0
|
C4C
|
3:CLA601
|
3.1
|
79.2
|
1.0
|
C1D
|
3:CLA601
|
3.1
|
79.2
|
1.0
|
C1A
|
3:CLA601
|
3.2
|
79.2
|
1.0
|
CHB
|
3:CLA601
|
3.4
|
79.2
|
1.0
|
CHC
|
3:CLA601
|
3.4
|
79.2
|
1.0
|
CHA
|
3:CLA601
|
3.5
|
79.2
|
1.0
|
CHD
|
3:CLA601
|
3.5
|
79.2
|
1.0
|
N
|
3:LEU38
|
3.8
|
78.4
|
1.0
|
CA
|
3:ALA37
|
4.1
|
77.4
|
1.0
|
C3D
|
3:CLA601
|
4.3
|
79.2
|
1.0
|
C2B
|
3:CLA601
|
4.3
|
79.2
|
1.0
|
C3B
|
3:CLA601
|
4.3
|
79.2
|
1.0
|
CB
|
3:ALA37
|
4.3
|
77.4
|
1.0
|
C2C
|
3:CLA601
|
4.3
|
79.2
|
1.0
|
C2D
|
3:CLA601
|
4.3
|
79.2
|
1.0
|
C3C
|
3:CLA601
|
4.4
|
79.2
|
1.0
|
C11
|
3:LHG617
|
4.4
|
80.4
|
1.0
|
C3A
|
3:CLA601
|
4.4
|
79.2
|
1.0
|
C10
|
3:LHG617
|
4.4
|
80.4
|
1.0
|
C
|
3:ALA37
|
4.4
|
77.4
|
1.0
|
C2A
|
3:CLA601
|
4.5
|
79.2
|
1.0
|
CD1
|
3:LEU38
|
4.6
|
78.4
|
1.0
|
C12
|
3:LHG617
|
4.6
|
80.4
|
1.0
|
CA
|
3:LEU38
|
4.8
|
78.4
|
1.0
|
CBD
|
3:CLA601
|
4.9
|
79.2
|
1.0
|
|
Magnesium binding site 2 out
of 45 in 8j0d
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Magnesium Binding Sites List in 8j0d
Magnesium binding site 2 out
of 45 in the Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg602
b:68.0
occ:1.00
|
MG
|
3:CLA602
|
0.0
|
68.0
|
1.0
|
NB
|
3:CLA602
|
2.0
|
68.0
|
1.0
|
ND
|
3:CLA602
|
2.0
|
68.0
|
1.0
|
NC
|
3:CLA602
|
2.1
|
68.0
|
1.0
|
NA
|
3:CLA602
|
2.1
|
68.0
|
1.0
|
C4D
|
3:CLA602
|
2.9
|
68.0
|
1.0
|
C1B
|
3:CLA602
|
3.0
|
68.0
|
1.0
|
C4A
|
3:CLA602
|
3.0
|
68.0
|
1.0
|
C4B
|
3:CLA602
|
3.1
|
68.0
|
1.0
|
C1C
|
3:CLA602
|
3.1
|
68.0
|
1.0
|
C4C
|
3:CLA602
|
3.1
|
68.0
|
1.0
|
C1A
|
3:CLA602
|
3.1
|
68.0
|
1.0
|
C1D
|
3:CLA602
|
3.2
|
68.0
|
1.0
|
OE2
|
3:GLU91
|
3.3
|
66.3
|
1.0
|
CHB
|
3:CLA602
|
3.4
|
68.0
|
1.0
|
CHC
|
3:CLA602
|
3.4
|
68.0
|
1.0
|
CHA
|
3:CLA602
|
3.5
|
68.0
|
1.0
|
CHD
|
3:CLA602
|
3.5
|
68.0
|
1.0
|
CD
|
3:GLU91
|
3.6
|
66.3
|
1.0
|
OE1
|
3:GLU91
|
3.7
|
66.3
|
1.0
|
C22
|
3:DD6614
|
4.1
|
76.2
|
1.0
|
C23
|
3:DD6614
|
4.1
|
76.2
|
1.0
|
C3D
|
3:CLA602
|
4.3
|
68.0
|
1.0
|
C2B
|
3:CLA602
|
4.3
|
68.0
|
1.0
|
C3B
|
3:CLA602
|
4.3
|
68.0
|
1.0
|
C2C
|
3:CLA602
|
4.3
|
68.0
|
1.0
|
C2D
|
3:CLA602
|
4.4
|
68.0
|
1.0
|
C3C
|
3:CLA602
|
4.4
|
68.0
|
1.0
|
C3A
|
3:CLA602
|
4.4
|
68.0
|
1.0
|
C2A
|
3:CLA602
|
4.4
|
68.0
|
1.0
|
NE
|
3:ARG205
|
4.5
|
63.7
|
1.0
|
O2A
|
3:CLA602
|
4.6
|
68.0
|
1.0
|
CG
|
3:GLU91
|
4.6
|
66.3
|
1.0
|
NH2
|
3:ARG205
|
4.7
|
63.7
|
1.0
|
C16
|
3:DD6614
|
4.8
|
76.2
|
1.0
|
CBA
|
3:CLA602
|
4.9
|
68.0
|
1.0
|
CBD
|
3:CLA602
|
4.9
|
68.0
|
1.0
|
CZ
|
3:ARG205
|
4.9
|
63.7
|
1.0
|
|
Magnesium binding site 3 out
of 45 in 8j0d
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Magnesium Binding Sites List in 8j0d
Magnesium binding site 3 out
of 45 in the Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg603
b:106.3
occ:1.00
|
MG
|
3:CLA603
|
0.0
|
106.3
|
1.0
|
NE2
|
3:HIS94
|
1.9
|
67.4
|
1.0
|
NB
|
3:CLA603
|
2.0
|
106.3
|
1.0
|
ND
|
3:CLA603
|
2.0
|
106.3
|
1.0
|
NC
|
3:CLA603
|
2.1
|
106.3
|
1.0
|
NA
|
3:CLA603
|
2.1
|
106.3
|
1.0
|
CE1
|
3:HIS94
|
2.7
|
67.4
|
1.0
|
C4D
|
3:CLA603
|
2.9
|
106.3
|
1.0
|
C1B
|
3:CLA603
|
3.0
|
106.3
|
1.0
|
C4A
|
3:CLA603
|
3.0
|
106.3
|
1.0
|
C4B
|
3:CLA603
|
3.0
|
106.3
|
1.0
|
C1C
|
3:CLA603
|
3.1
|
106.3
|
1.0
|
CD2
|
3:HIS94
|
3.1
|
67.4
|
1.0
|
C4C
|
3:CLA603
|
3.1
|
106.3
|
1.0
|
C1D
|
3:CLA603
|
3.1
|
106.3
|
1.0
|
C1A
|
3:CLA603
|
3.2
|
106.3
|
1.0
|
CHB
|
3:CLA603
|
3.4
|
106.3
|
1.0
|
CHC
|
3:CLA603
|
3.4
|
106.3
|
1.0
|
CHA
|
3:CLA603
|
3.5
|
106.3
|
1.0
|
CHD
|
3:CLA603
|
3.5
|
106.3
|
1.0
|
ND1
|
3:HIS94
|
3.9
|
67.4
|
1.0
|
CG
|
3:HIS94
|
4.1
|
67.4
|
1.0
|
C11
|
3:CLA612
|
4.1
|
106.3
|
1.0
|
C3D
|
3:CLA603
|
4.3
|
106.3
|
1.0
|
C2B
|
3:CLA603
|
4.3
|
106.3
|
1.0
|
C3B
|
3:CLA603
|
4.3
|
106.3
|
1.0
|
C2C
|
3:CLA603
|
4.3
|
106.3
|
1.0
|
C2D
|
3:CLA603
|
4.3
|
106.3
|
1.0
|
C3C
|
3:CLA603
|
4.4
|
106.3
|
1.0
|
C3A
|
3:CLA603
|
4.4
|
106.3
|
1.0
|
C9
|
3:CLA612
|
4.5
|
106.3
|
1.0
|
C2A
|
3:CLA603
|
4.5
|
106.3
|
1.0
|
C12
|
3:CLA612
|
4.7
|
106.3
|
1.0
|
CBD
|
3:CLA603
|
4.9
|
106.3
|
1.0
|
|
Magnesium binding site 4 out
of 45 in 8j0d
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Magnesium Binding Sites List in 8j0d
Magnesium binding site 4 out
of 45 in the Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg604
b:92.9
occ:1.00
|
MG
|
3:CLA604
|
0.0
|
92.9
|
1.0
|
NB
|
3:CLA604
|
2.0
|
92.9
|
1.0
|
ND
|
3:CLA604
|
2.0
|
92.9
|
1.0
|
NC
|
3:CLA604
|
2.1
|
92.9
|
1.0
|
NA
|
3:CLA604
|
2.1
|
92.9
|
1.0
|
C4D
|
3:CLA604
|
2.9
|
92.9
|
1.0
|
C1B
|
3:CLA604
|
3.0
|
92.9
|
1.0
|
C4A
|
3:CLA604
|
3.0
|
92.9
|
1.0
|
C4B
|
3:CLA604
|
3.1
|
92.9
|
1.0
|
C1C
|
3:CLA604
|
3.1
|
92.9
|
1.0
|
C4C
|
3:CLA604
|
3.1
|
92.9
|
1.0
|
C1A
|
3:CLA604
|
3.1
|
92.9
|
1.0
|
C1D
|
3:CLA604
|
3.2
|
92.9
|
1.0
|
CHB
|
3:CLA604
|
3.4
|
92.9
|
1.0
|
CHC
|
3:CLA604
|
3.4
|
92.9
|
1.0
|
CHA
|
3:CLA604
|
3.5
|
92.9
|
1.0
|
CHD
|
3:CLA604
|
3.5
|
92.9
|
1.0
|
C2
|
3:CLA604
|
4.2
|
92.9
|
1.0
|
C3D
|
3:CLA604
|
4.3
|
92.9
|
1.0
|
C2B
|
3:CLA604
|
4.3
|
92.9
|
1.0
|
C3B
|
3:CLA604
|
4.3
|
92.9
|
1.0
|
C2C
|
3:CLA604
|
4.3
|
92.9
|
1.0
|
C2D
|
3:CLA604
|
4.4
|
92.9
|
1.0
|
C3C
|
3:CLA604
|
4.4
|
92.9
|
1.0
|
C1
|
3:CLA604
|
4.4
|
92.9
|
1.0
|
C3A
|
3:CLA604
|
4.4
|
92.9
|
1.0
|
C2A
|
3:CLA604
|
4.5
|
92.9
|
1.0
|
C3
|
3:CLA604
|
4.5
|
92.9
|
1.0
|
O2A
|
3:CLA604
|
4.5
|
92.9
|
1.0
|
CBD
|
3:CLA604
|
4.9
|
92.9
|
1.0
|
|
Magnesium binding site 5 out
of 45 in 8j0d
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Magnesium Binding Sites List in 8j0d
Magnesium binding site 5 out
of 45 in the Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg605
b:107.6
occ:1.00
|
MG
|
3:CLA605
|
0.0
|
107.6
|
1.0
|
NB
|
3:CLA605
|
2.0
|
107.6
|
1.0
|
ND
|
3:CLA605
|
2.0
|
107.6
|
1.0
|
NC
|
3:CLA605
|
2.1
|
107.6
|
1.0
|
NA
|
3:CLA605
|
2.1
|
107.6
|
1.0
|
C4D
|
3:CLA605
|
2.9
|
107.6
|
1.0
|
C1B
|
3:CLA605
|
3.0
|
107.6
|
1.0
|
C4A
|
3:CLA605
|
3.0
|
107.6
|
1.0
|
C4B
|
3:CLA605
|
3.1
|
107.6
|
1.0
|
C1C
|
3:CLA605
|
3.1
|
107.6
|
1.0
|
C4C
|
3:CLA605
|
3.1
|
107.6
|
1.0
|
C1A
|
3:CLA605
|
3.1
|
107.6
|
1.0
|
C1D
|
3:CLA605
|
3.2
|
107.6
|
1.0
|
CHB
|
3:CLA605
|
3.4
|
107.6
|
1.0
|
CHC
|
3:CLA605
|
3.4
|
107.6
|
1.0
|
CHA
|
3:CLA605
|
3.5
|
107.6
|
1.0
|
CHD
|
3:CLA605
|
3.5
|
107.6
|
1.0
|
C3D
|
3:CLA605
|
4.3
|
107.6
|
1.0
|
C2B
|
3:CLA605
|
4.3
|
107.6
|
1.0
|
C3B
|
3:CLA605
|
4.3
|
107.6
|
1.0
|
C2C
|
3:CLA605
|
4.3
|
107.6
|
1.0
|
C2D
|
3:CLA605
|
4.4
|
107.6
|
1.0
|
C3C
|
3:CLA605
|
4.4
|
107.6
|
1.0
|
C3A
|
3:CLA605
|
4.4
|
107.6
|
1.0
|
C2A
|
3:CLA605
|
4.5
|
107.6
|
1.0
|
CBA
|
3:CLA605
|
4.9
|
107.6
|
1.0
|
CBD
|
3:CLA605
|
4.9
|
107.6
|
1.0
|
|
Magnesium binding site 6 out
of 45 in 8j0d
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Magnesium Binding Sites List in 8j0d
Magnesium binding site 6 out
of 45 in the Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg606
b:106.3
occ:1.00
|
MG
|
3:CLA606
|
0.0
|
106.3
|
1.0
|
NB
|
3:CLA606
|
2.0
|
106.3
|
1.0
|
ND
|
3:CLA606
|
2.0
|
106.3
|
1.0
|
NA
|
3:CLA606
|
2.1
|
106.3
|
1.0
|
NC
|
3:CLA606
|
2.1
|
106.3
|
1.0
|
OE1
|
3:GLU154
|
2.8
|
85.9
|
1.0
|
C4D
|
3:CLA606
|
2.9
|
106.3
|
1.0
|
C1B
|
3:CLA606
|
3.0
|
106.3
|
1.0
|
C4A
|
3:CLA606
|
3.0
|
106.3
|
1.0
|
C4B
|
3:CLA606
|
3.1
|
106.3
|
1.0
|
C1C
|
3:CLA606
|
3.1
|
106.3
|
1.0
|
C1A
|
3:CLA606
|
3.1
|
106.3
|
1.0
|
C4C
|
3:CLA606
|
3.1
|
106.3
|
1.0
|
C1D
|
3:CLA606
|
3.1
|
106.3
|
1.0
|
CBB
|
3:CLA611
|
3.3
|
106.3
|
1.0
|
CHB
|
3:CLA606
|
3.4
|
106.3
|
1.0
|
CHC
|
3:CLA606
|
3.4
|
106.3
|
1.0
|
CHA
|
3:CLA606
|
3.5
|
106.3
|
1.0
|
CHD
|
3:CLA606
|
3.5
|
106.3
|
1.0
|
CD
|
3:GLU154
|
3.5
|
85.9
|
1.0
|
OE2
|
3:GLU154
|
3.8
|
85.9
|
1.0
|
CAB
|
3:CLA611
|
4.0
|
106.3
|
1.0
|
C3D
|
3:CLA606
|
4.2
|
106.3
|
1.0
|
C2B
|
3:CLA606
|
4.3
|
106.3
|
1.0
|
C3B
|
3:CLA606
|
4.3
|
106.3
|
1.0
|
C3B
|
3:CLA611
|
4.3
|
106.3
|
1.0
|
C2C
|
3:CLA606
|
4.3
|
106.3
|
1.0
|
C2D
|
3:CLA606
|
4.3
|
106.3
|
1.0
|
C3C
|
3:CLA606
|
4.4
|
106.3
|
1.0
|
C3A
|
3:CLA606
|
4.4
|
106.3
|
1.0
|
C2A
|
3:CLA606
|
4.5
|
106.3
|
1.0
|
C4B
|
3:CLA611
|
4.7
|
106.3
|
1.0
|
CG
|
3:GLU154
|
4.8
|
85.9
|
1.0
|
CHC
|
3:CLA611
|
4.9
|
106.3
|
1.0
|
CBD
|
3:CLA606
|
4.9
|
106.3
|
1.0
|
CB
|
3:GLU154
|
4.9
|
85.9
|
1.0
|
NH2
|
3:ARG157
|
4.9
|
82.2
|
1.0
|
CBA
|
3:CLA606
|
5.0
|
106.3
|
1.0
|
|
Magnesium binding site 7 out
of 45 in 8j0d
Go back to
Magnesium Binding Sites List in 8j0d
Magnesium binding site 7 out
of 45 in the Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg607
b:106.3
occ:1.00
|
MG
|
3:CLA607
|
0.0
|
106.3
|
1.0
|
NB
|
3:CLA607
|
2.0
|
106.3
|
1.0
|
ND
|
3:CLA607
|
2.0
|
106.3
|
1.0
|
NC
|
3:CLA607
|
2.1
|
106.3
|
1.0
|
NA
|
3:CLA607
|
2.1
|
106.3
|
1.0
|
OE2
|
3:GLU200
|
2.1
|
73.2
|
1.0
|
C4D
|
3:CLA607
|
2.9
|
106.3
|
1.0
|
C1B
|
3:CLA607
|
3.0
|
106.3
|
1.0
|
C4A
|
3:CLA607
|
3.0
|
106.3
|
1.0
|
C4B
|
3:CLA607
|
3.1
|
106.3
|
1.0
|
C1C
|
3:CLA607
|
3.1
|
106.3
|
1.0
|
C4C
|
3:CLA607
|
3.1
|
106.3
|
1.0
|
C1A
|
3:CLA607
|
3.1
|
106.3
|
1.0
|
C1D
|
3:CLA607
|
3.2
|
106.3
|
1.0
|
C41
|
3:A86613
|
3.3
|
74.5
|
1.0
|
CD
|
3:GLU200
|
3.3
|
73.2
|
1.0
|
CHB
|
3:CLA607
|
3.4
|
106.3
|
1.0
|
CHC
|
3:CLA607
|
3.4
|
106.3
|
1.0
|
CHA
|
3:CLA607
|
3.5
|
106.3
|
1.0
|
CHD
|
3:CLA607
|
3.5
|
106.3
|
1.0
|
OE1
|
3:GLU200
|
4.1
|
73.2
|
1.0
|
C3D
|
3:CLA607
|
4.2
|
106.3
|
1.0
|
C2B
|
3:CLA607
|
4.3
|
106.3
|
1.0
|
C3B
|
3:CLA607
|
4.3
|
106.3
|
1.0
|
CG
|
3:GLU200
|
4.3
|
73.2
|
1.0
|
C2C
|
3:CLA607
|
4.3
|
106.3
|
1.0
|
C2D
|
3:CLA607
|
4.4
|
106.3
|
1.0
|
C3C
|
3:CLA607
|
4.4
|
106.3
|
1.0
|
C3A
|
3:CLA607
|
4.4
|
106.3
|
1.0
|
C2A
|
3:CLA607
|
4.5
|
106.3
|
1.0
|
NH2
|
3:ARG96
|
4.6
|
66.9
|
1.0
|
NE
|
3:ARG96
|
4.8
|
66.9
|
1.0
|
C32
|
3:A86613
|
4.8
|
74.5
|
1.0
|
O2A
|
3:CLA607
|
4.8
|
106.3
|
1.0
|
CBD
|
3:CLA607
|
4.9
|
106.3
|
1.0
|
CBA
|
3:CLA607
|
4.9
|
106.3
|
1.0
|
CZ
|
3:ARG96
|
4.9
|
66.9
|
1.0
|
|
Magnesium binding site 8 out
of 45 in 8j0d
Go back to
Magnesium Binding Sites List in 8j0d
Magnesium binding site 8 out
of 45 in the Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg608
b:73.8
occ:1.00
|
MG
|
3:CLA608
|
0.0
|
73.8
|
1.0
|
NB
|
3:CLA608
|
2.0
|
73.8
|
1.0
|
ND
|
3:CLA608
|
2.0
|
73.8
|
1.0
|
NC
|
3:CLA608
|
2.1
|
73.8
|
1.0
|
O4
|
3:LHG617
|
2.1
|
80.4
|
1.0
|
NA
|
3:CLA608
|
2.1
|
73.8
|
1.0
|
C4D
|
3:CLA608
|
2.9
|
73.8
|
1.0
|
C1B
|
3:CLA608
|
3.0
|
73.8
|
1.0
|
C4A
|
3:CLA608
|
3.0
|
73.8
|
1.0
|
C4B
|
3:CLA608
|
3.1
|
73.8
|
1.0
|
C1C
|
3:CLA608
|
3.1
|
73.8
|
1.0
|
C4C
|
3:CLA608
|
3.1
|
73.8
|
1.0
|
C1D
|
3:CLA608
|
3.1
|
73.8
|
1.0
|
C1A
|
3:CLA608
|
3.2
|
73.8
|
1.0
|
CHB
|
3:CLA608
|
3.4
|
73.8
|
1.0
|
CHC
|
3:CLA608
|
3.4
|
73.8
|
1.0
|
CHA
|
3:CLA608
|
3.5
|
73.8
|
1.0
|
CHD
|
3:CLA608
|
3.5
|
73.8
|
1.0
|
P
|
3:LHG617
|
3.6
|
80.4
|
1.0
|
O6
|
3:LHG617
|
4.1
|
80.4
|
1.0
|
C3D
|
3:CLA608
|
4.2
|
73.8
|
1.0
|
C2B
|
3:CLA608
|
4.3
|
73.8
|
1.0
|
C3B
|
3:CLA608
|
4.3
|
73.8
|
1.0
|
C2C
|
3:CLA608
|
4.3
|
73.8
|
1.0
|
C2D
|
3:CLA608
|
4.3
|
73.8
|
1.0
|
C3C
|
3:CLA608
|
4.4
|
73.8
|
1.0
|
O3
|
3:LHG617
|
4.4
|
80.4
|
1.0
|
C3A
|
3:CLA608
|
4.4
|
73.8
|
1.0
|
C2A
|
3:CLA608
|
4.5
|
73.8
|
1.0
|
C3
|
3:LHG617
|
4.6
|
80.4
|
1.0
|
NZ
|
3:LYS202
|
4.7
|
67.9
|
1.0
|
O5
|
3:LHG617
|
4.7
|
80.4
|
1.0
|
CBD
|
3:CLA608
|
4.9
|
73.8
|
1.0
|
|
Magnesium binding site 9 out
of 45 in 8j0d
Go back to
Magnesium Binding Sites List in 8j0d
Magnesium binding site 9 out
of 45 in the Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg609
b:68.1
occ:1.00
|
MG
|
3:KC1609
|
0.0
|
68.1
|
1.0
|
NE2
|
3:HIS203
|
1.9
|
66.8
|
1.0
|
ND
|
3:KC1609
|
2.0
|
68.1
|
1.0
|
NB
|
3:KC1609
|
2.0
|
68.1
|
1.0
|
NC
|
3:KC1609
|
2.0
|
68.1
|
1.0
|
NA
|
3:KC1609
|
2.1
|
68.1
|
1.0
|
CE1
|
3:HIS203
|
2.7
|
66.8
|
1.0
|
C4D
|
3:KC1609
|
2.9
|
68.1
|
1.0
|
C1B
|
3:KC1609
|
3.0
|
68.1
|
1.0
|
C4B
|
3:KC1609
|
3.0
|
68.1
|
1.0
|
C1D
|
3:KC1609
|
3.0
|
68.1
|
1.0
|
C4A
|
3:KC1609
|
3.1
|
68.1
|
1.0
|
C1C
|
3:KC1609
|
3.1
|
68.1
|
1.0
|
C4C
|
3:KC1609
|
3.1
|
68.1
|
1.0
|
CD2
|
3:HIS203
|
3.1
|
66.8
|
1.0
|
C1A
|
3:KC1609
|
3.1
|
68.1
|
1.0
|
CHB
|
3:KC1609
|
3.4
|
68.1
|
1.0
|
CHC
|
3:KC1609
|
3.4
|
68.1
|
1.0
|
CHA
|
3:KC1609
|
3.5
|
68.1
|
1.0
|
CHD
|
3:KC1609
|
3.5
|
68.1
|
1.0
|
ND1
|
3:HIS203
|
3.9
|
66.8
|
1.0
|
CG
|
3:HIS203
|
4.1
|
66.8
|
1.0
|
C3D
|
3:KC1609
|
4.1
|
68.1
|
1.0
|
C2D
|
3:KC1609
|
4.2
|
68.1
|
1.0
|
C2B
|
3:KC1609
|
4.2
|
68.1
|
1.0
|
C3B
|
3:KC1609
|
4.2
|
68.1
|
1.0
|
C3A
|
3:KC1609
|
4.3
|
68.1
|
1.0
|
C3C
|
3:KC1609
|
4.3
|
68.1
|
1.0
|
C2C
|
3:KC1609
|
4.3
|
68.1
|
1.0
|
C2A
|
3:KC1609
|
4.3
|
68.1
|
1.0
|
CBD
|
3:KC1609
|
4.9
|
68.1
|
1.0
|
|
Magnesium binding site 10 out
of 45 in 8j0d
Go back to
Magnesium Binding Sites List in 8j0d
Magnesium binding site 10 out
of 45 in the Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Fcp Heterodimer, LHCA2, and LHCF5 Together As the M1 Side Binds to the Psii Core in the Diatom Thalassiosira Pseudonana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg610
b:78.4
occ:1.00
|
MG
|
3:CLA610
|
0.0
|
78.4
|
1.0
|
NB
|
3:CLA610
|
2.0
|
78.4
|
1.0
|
ND
|
3:CLA610
|
2.0
|
78.4
|
1.0
|
NA
|
3:CLA610
|
2.1
|
78.4
|
1.0
|
NC
|
3:CLA610
|
2.1
|
78.4
|
1.0
|
OE1
|
3:GLN217
|
2.3
|
80.3
|
1.0
|
C4D
|
3:CLA610
|
2.9
|
78.4
|
1.0
|
CD
|
3:GLN217
|
3.0
|
80.3
|
1.0
|
C1B
|
3:CLA610
|
3.0
|
78.4
|
1.0
|
C4A
|
3:CLA610
|
3.0
|
78.4
|
1.0
|
C4B
|
3:CLA610
|
3.1
|
78.4
|
1.0
|
C1C
|
3:CLA610
|
3.1
|
78.4
|
1.0
|
C4C
|
3:CLA610
|
3.1
|
78.4
|
1.0
|
C1A
|
3:CLA610
|
3.1
|
78.4
|
1.0
|
C1D
|
3:CLA610
|
3.1
|
78.4
|
1.0
|
CHB
|
3:CLA610
|
3.4
|
78.4
|
1.0
|
CHC
|
3:CLA610
|
3.4
|
78.4
|
1.0
|
CHA
|
3:CLA610
|
3.5
|
78.4
|
1.0
|
CHD
|
3:CLA610
|
3.5
|
78.4
|
1.0
|
NE2
|
3:GLN217
|
3.5
|
80.3
|
1.0
|
CG
|
3:GLN217
|
3.9
|
80.3
|
1.0
|
C3D
|
3:CLA610
|
4.2
|
78.4
|
1.0
|
C2B
|
3:CLA610
|
4.3
|
78.4
|
1.0
|
C3B
|
3:CLA610
|
4.3
|
78.4
|
1.0
|
C2C
|
3:CLA610
|
4.3
|
78.4
|
1.0
|
C2D
|
3:CLA610
|
4.3
|
78.4
|
1.0
|
C3C
|
3:CLA610
|
4.4
|
78.4
|
1.0
|
C3A
|
3:CLA610
|
4.4
|
78.4
|
1.0
|
C2A
|
3:CLA610
|
4.4
|
78.4
|
1.0
|
C19
|
3:A86613
|
4.9
|
74.5
|
1.0
|
CBD
|
3:CLA610
|
4.9
|
78.4
|
1.0
|
|
Reference:
Y.Feng,
Z.H.Li,
X.Y.Li,
L.Shen,
X.Y.Liu,
C.Zhou,
J.Y.Zhang,
M.Sang,
G.Y.Han,
W.Q.Yang,
T.Kuang,
W.D.Wang,
J.R.Shen.
Structure of A Diatom Photosystem II Supercomplex Containing A Member of Lhcx Family and Dimeric Fcpii Sci Adv 2023.
ISSN: ESSN 2375-2548
DOI: 10.1126/SCIADV.ADI8446
Page generated: Fri Oct 4 11:26:35 2024
|