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Magnesium in PDB 8j0f: Gk Tetramer with Adjacent Hooks at Reaction State

Enzymatic activity of Gk Tetramer with Adjacent Hooks at Reaction State

All present enzymatic activity of Gk Tetramer with Adjacent Hooks at Reaction State:
1.2.1.41; 2.7.2.11;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Gk Tetramer with Adjacent Hooks at Reaction State (pdb code 8j0f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Gk Tetramer with Adjacent Hooks at Reaction State, PDB code: 8j0f:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 8j0f

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Magnesium binding site 1 out of 4 in the Gk Tetramer with Adjacent Hooks at Reaction State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gk Tetramer with Adjacent Hooks at Reaction State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg803

b:30.0
occ:1.00
 O C:ARG236 2.3 210.5 1.0
O1A C:ADP801 2.7 20.0 1.0
OA3 C:RGP802 3.1 20.0 1.0
C C:ARG236 3.1 211.4 1.0
N C:GLY238 3.3 176.1 1.0
O C:GLY238 3.3 171.5 1.0
C C:GLY237 3.6 193.1 1.0
OD2 C:ASP177 3.7 148.6 1.0
N C:GLY237 3.7 195.3 1.0
CA C:GLY237 3.7 192.8 1.0
N C:ARG236 4.0 212.3 1.0
CA C:GLY238 4.0 175.1 1.0
C C:GLY238 4.1 173.1 1.0
CA C:ARG236 4.1 211.6 1.0
PA C:ADP801 4.2 20.0 1.0
OD2 C:ASP175 4.2 164.0 1.0
O1B C:ADP801 4.3 20.0 1.0
CG C:ASP177 4.3 148.3 1.0
OD1 C:ASP177 4.4 148.6 1.0
PA C:RGP802 4.4 20.0 1.0
NZ C:LYS242 4.4 124.6 1.0
O C:GLY237 4.5 192.1 1.0
O3A C:ADP801 4.6 20.0 1.0
O3B C:ADP801 4.6 20.0 1.0
OE2 C:RGP802 4.8 20.0 1.0
CB C:ALA241 4.8 141.1 1.0
PB C:ADP801 4.8 20.0 1.0
OA1 C:RGP802 4.8 20.0 1.0
CB C:ARG236 4.8 210.2 1.0
O5' C:ADP801 5.0 20.0 1.0
CG C:ASP175 5.0 161.7 1.0

Magnesium binding site 2 out of 4 in 8j0f

Go back to Magnesium Binding Sites List in 8j0f
Magnesium binding site 2 out of 4 in the Gk Tetramer with Adjacent Hooks at Reaction State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Gk Tetramer with Adjacent Hooks at Reaction State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:30.0
occ:1.00
 O A:ARG236 2.3 210.5 1.0
O1A A:ADP801 2.7 20.0 1.0
OA3 A:RGP802 3.1 20.0 1.0
C A:ARG236 3.1 211.4 1.0
N A:GLY238 3.3 176.1 1.0
O A:GLY238 3.3 171.5 1.0
C A:GLY237 3.6 193.1 1.0
OD2 A:ASP177 3.7 148.6 1.0
N A:GLY237 3.7 195.3 1.0
CA A:GLY237 3.7 192.8 1.0
N A:ARG236 4.0 212.3 1.0
CA A:GLY238 4.0 175.1 1.0
C A:GLY238 4.1 173.1 1.0
CA A:ARG236 4.1 211.6 1.0
PA A:ADP801 4.2 20.0 1.0
OD2 A:ASP175 4.2 164.0 1.0
O1B A:ADP801 4.3 20.0 1.0
CG A:ASP177 4.3 148.3 1.0
OD1 A:ASP177 4.4 148.6 1.0
PA A:RGP802 4.4 20.0 1.0
NZ A:LYS242 4.4 124.6 1.0
O A:GLY237 4.5 192.1 1.0
O3A A:ADP801 4.6 20.0 1.0
O3B A:ADP801 4.6 20.0 1.0
OE2 A:RGP802 4.8 20.0 1.0
CB A:ALA241 4.8 141.1 1.0
PB A:ADP801 4.8 20.0 1.0
OA1 A:RGP802 4.8 20.0 1.0
CB A:ARG236 4.8 210.2 1.0
O5' A:ADP801 5.0 20.0 1.0
CG A:ASP175 5.0 161.7 1.0

Magnesium binding site 3 out of 4 in 8j0f

Go back to Magnesium Binding Sites List in 8j0f
Magnesium binding site 3 out of 4 in the Gk Tetramer with Adjacent Hooks at Reaction State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Gk Tetramer with Adjacent Hooks at Reaction State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg803

b:30.0
occ:1.00
 O B:ARG236 2.3 210.5 1.0
O2A B:ADP801 2.7 20.0 1.0
OA3 B:RGP802 3.1 20.0 1.0
C B:ARG236 3.1 211.4 1.0
N B:GLY238 3.3 176.1 1.0
O B:GLY238 3.3 171.5 1.0
C B:GLY237 3.6 193.1 1.0
OD2 B:ASP177 3.7 148.6 1.0
N B:GLY237 3.7 195.3 1.0
CA B:GLY237 3.7 192.8 1.0
N B:ARG236 4.0 212.3 1.0
CA B:GLY238 4.0 175.1 1.0
C B:GLY238 4.1 173.1 1.0
CA B:ARG236 4.1 211.6 1.0
PA B:ADP801 4.2 20.0 1.0
OD2 B:ASP175 4.2 164.0 1.0
O3B B:ADP801 4.3 20.0 1.0
CG B:ASP177 4.3 148.3 1.0
OD1 B:ASP177 4.4 148.6 1.0
PA B:RGP802 4.4 20.0 1.0
NZ B:LYS242 4.4 124.6 1.0
O B:GLY237 4.5 192.1 1.0
O3A B:ADP801 4.6 20.0 1.0
O1B B:ADP801 4.6 20.0 1.0
OE2 B:RGP802 4.8 20.0 1.0
CB B:ALA241 4.8 141.1 1.0
PB B:ADP801 4.8 20.0 1.0
OA2 B:RGP802 4.8 20.0 1.0
CB B:ARG236 4.8 210.2 1.0
O5' B:ADP801 5.0 20.0 1.0
CG B:ASP175 5.0 161.7 1.0

Magnesium binding site 4 out of 4 in 8j0f

Go back to Magnesium Binding Sites List in 8j0f
Magnesium binding site 4 out of 4 in the Gk Tetramer with Adjacent Hooks at Reaction State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Gk Tetramer with Adjacent Hooks at Reaction State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg803

b:30.0
occ:1.00
 O D:ARG236 2.3 210.5 1.0
O2A D:ADP801 2.7 20.0 1.0
OA3 D:RGP802 3.1 20.0 1.0
C D:ARG236 3.1 211.4 1.0
N D:GLY238 3.3 176.1 1.0
O D:GLY238 3.3 171.5 1.0
C D:GLY237 3.6 193.1 1.0
OD2 D:ASP177 3.7 148.6 1.0
N D:GLY237 3.7 195.3 1.0
CA D:GLY237 3.7 192.8 1.0
N D:ARG236 4.0 212.3 1.0
CA D:GLY238 4.0 175.1 1.0
C D:GLY238 4.1 173.1 1.0
CA D:ARG236 4.1 211.6 1.0
PA D:ADP801 4.2 20.0 1.0
OD2 D:ASP175 4.2 164.0 1.0
O3B D:ADP801 4.3 20.0 1.0
CG D:ASP177 4.3 148.3 1.0
OD1 D:ASP177 4.4 148.6 1.0
PA D:RGP802 4.4 20.0 1.0
NZ D:LYS242 4.4 124.6 1.0
O D:GLY237 4.5 192.1 1.0
O3A D:ADP801 4.6 20.0 1.0
O1B D:ADP801 4.6 20.0 1.0
OE2 D:RGP802 4.8 20.0 1.0
CB D:ALA241 4.8 141.1 1.0
PB D:ADP801 4.8 20.0 1.0
OA2 D:RGP802 4.8 20.0 1.0
CB D:ARG236 4.8 210.2 1.0
O5' D:ADP801 5.0 20.0 1.0
CG D:ASP175 5.0 161.7 1.0

Reference:

T.Zhang, C.J.Guo, J.L.Liu. Gk Tetramer with Adjacent Hooks at Reaction State To Be Published.
Page generated: Fri Oct 4 11:27:03 2024

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