Magnesium in PDB 8j0s: Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)

Enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)

Other elements in 8j0s:

Magnesium Binding Sites:

Magnesium binding site 1 out of 5 in 8j0s

Magnesium Binding Sites List in 8j0s

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:11.5 occ:1.00 O1B A:ATP600 2.0 5.3 1.0 OG1 A:THR179 2.0 12.9 1.0 O1G A:ATP600 2.3 5.3 1.0 PB A:ATP600 3.3 5.3 1.0 CB A:THR179 3.3 12.9 1.0 PG A:ATP600 3.3 5.3 1.0 O3G A:ATP600 3.6 5.3 1.0 O3B A:ATP600 3.7 5.3 1.0 CG2 A:THR179 4.0 12.9 1.0 O2B A:ATP600 4.1 5.3 1.0 OD1 A:ASP272 4.1 10.0 1.0 N A:THR179 4.3 12.9 1.0 CA A:THR179 4.4 12.9 1.0 O1A A:ATP600 4.4 5.3 1.0 O3A A:ATP600 4.5 5.3 1.0 OD2 A:ASP272 4.5 10.0 1.0 O2G A:ATP600 4.7 5.3 1.0 CG A:ASP272 4.7 10.0 1.0 PA A:ATP600 4.8 5.3 1.0

Magnesium binding site 2 out of 5 in 8j0s

Magnesium Binding Sites List in 8j0s

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:20.0 occ:1.00 O3G B:ATP600 2.0 15.4 1.0 OG1 B:THR179 2.0 17.9 1.0 O2B B:ATP600 2.3 15.4 1.0 CB B:THR179 3.3 17.9 1.0 PG B:ATP600 3.4 15.4 1.0 PB B:ATP600 3.5 15.4 1.0 OD1 B:ASP272 3.5 13.5 1.0 O3B B:ATP600 3.7 15.4 1.0 OE1 B:GLN211 3.8 13.1 1.0 CG2 B:THR179 4.0 17.9 1.0 OD2 B:ASP272 4.1 13.5 1.0 CG B:ASP272 4.2 13.5 1.0 O1G B:ATP600 4.3 15.4 1.0 N B:THR179 4.3 17.9 1.0 O2G B:ATP600 4.3 15.4 1.0 O1B B:ATP600 4.4 15.4 1.0 CA B:THR179 4.4 17.9 1.0 O1A B:ATP600 4.4 15.4 1.0 O3A B:ATP600 4.7 15.4 1.0 CD B:GLN211 4.7 13.1 1.0 PA B:ATP600 4.9 15.4 1.0

Magnesium binding site 3 out of 5 in 8j0s

Magnesium Binding Sites List in 8j0s

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:11.3 occ:1.00 O2B C:ATP600 1.9 0.0 1.0 OG1 C:THR179 2.0 12.0 1.0 O1G C:ATP600 2.3 0.0 1.0 CB C:THR179 3.2 12.0 1.0 PB C:ATP600 3.2 0.0 1.0 PG C:ATP600 3.3 0.0 1.0 O2G C:ATP600 3.6 0.0 1.0 O3B C:ATP600 3.7 0.0 1.0 CG2 C:THR179 4.0 12.0 1.0 O1B C:ATP600 4.0 0.0 1.0 OD1 C:ASP272 4.0 12.4 1.0 N C:THR179 4.2 12.0 1.0 CA C:THR179 4.3 12.0 1.0 O1A C:ATP600 4.3 0.0 1.0 OD2 C:ASP272 4.4 12.4 1.0 O3A C:ATP600 4.4 0.0 1.0 CG C:ASP272 4.6 12.4 1.0 O3G C:ATP600 4.7 0.0 1.0 PA C:ATP600 4.7 0.0 1.0 O2A C:ATP600 4.8 0.0 1.0

Magnesium binding site 4 out of 5 in 8j0s

Magnesium Binding Sites List in 8j0s

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:15.4 occ:1.00 O1B D:ADP600 1.8 8.0 1.0 OG1 D:THR178 2.0 15.9 1.0 PB D:ADP600 3.1 8.0 1.0 CB D:THR178 3.4 15.9 1.0 OE1 D:GLU203 3.4 16.4 1.0 O2B D:ADP600 3.5 8.0 1.0 NH1 D:ARG204 3.7 14.6 1.0 N D:THR178 3.9 15.9 1.0 CA D:THR178 4.1 15.9 1.0 O3A D:ADP600 4.1 8.0 1.0 CD D:GLU203 4.2 16.4 1.0 O3B D:ADP600 4.2 8.0 1.0 OD1 D:ASP265 4.2 13.3 1.0 OE1 D:GLU207 4.2 17.7 1.0 CG2 D:THR178 4.4 15.9 1.0 OD2 D:ASP265 4.5 13.3 1.0 ND2 D:ASN266 4.5 12.8 1.0 CE D:LYS177 4.5 13.3 1.0 CB D:LYS177 4.5 13.3 1.0 O1A D:ADP600 4.5 8.0 1.0 OE2 D:GLU203 4.6 16.4 1.0 OE2 D:GLU207 4.6 17.7 1.0 CG D:ASP265 4.7 13.3 1.0 C D:LYS177 4.8 13.3 1.0 CD D:GLU207 4.9 17.7 1.0 PA D:ADP600 4.9 8.0 1.0 NZ D:LYS177 4.9 13.3 1.0 CZ D:ARG204 4.9 14.6 1.0

Magnesium binding site 5 out of 5 in 8j0s

Magnesium Binding Sites List in 8j0s

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:11.7 occ:1.00 OG1 F:THR178 2.0 10.2 1.0 O1B F:ADP600 2.7 5.3 1.0 O1A F:ADP600 2.8 5.3 1.0 CB F:THR178 3.3 10.2 1.0 OE1 F:GLU203 3.4 11.6 1.0 NH1 F:ARG204 3.6 11.8 1.0 PB F:ADP600 3.8 5.3 1.0 PA F:ADP600 3.9 5.3 1.0 OE2 F:GLU207 4.0 13.4 1.0 O3A F:ADP600 4.1 5.3 1.0 OE1 F:GLU207 4.1 13.4 1.0 O2B F:ADP600 4.1 5.3 1.0 CG2 F:THR178 4.2 10.2 1.0 N F:THR178 4.2 10.2 1.0 CA F:THR178 4.3 10.2 1.0 CD F:GLU203 4.3 11.6 1.0 CD F:GLU207 4.5 13.4 1.0 O2A F:ADP600 4.5 5.3 1.0 OD1 F:ASP265 4.6 10.9 1.0 OD2 F:ASP265 4.7 10.9 1.0 OE2 F:GLU203 4.9 11.6 1.0 CZ F:ARG204 4.9 11.8 1.0 ND2 F:ASN266 4.9 10.0 1.0

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