Atomistry » Magnesium » PDB 8is7-8j3x » 8j0s
Atomistry »
  Magnesium »
    PDB 8is7-8j3x »
      8j0s »

Magnesium in PDB 8j0s: Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)

Enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)

All present enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq):
7.1.2.2;

Other elements in 8j0s:

The structure of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) also contains other interesting chemical elements:

Bromine (Br) 7 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) (pdb code 8j0s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq), PDB code: 8j0s:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 8j0s

Go back to Magnesium Binding Sites List in 8j0s
Magnesium binding site 1 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:11.5
occ:1.00
 O1B A:ATP600 2.0 5.3 1.0
OG1 A:THR179 2.0 12.9 1.0
O1G A:ATP600 2.3 5.3 1.0
PB A:ATP600 3.3 5.3 1.0
CB A:THR179 3.3 12.9 1.0
PG A:ATP600 3.3 5.3 1.0
O3G A:ATP600 3.6 5.3 1.0
O3B A:ATP600 3.7 5.3 1.0
CG2 A:THR179 4.0 12.9 1.0
O2B A:ATP600 4.1 5.3 1.0
OD1 A:ASP272 4.1 10.0 1.0
N A:THR179 4.3 12.9 1.0
CA A:THR179 4.4 12.9 1.0
O1A A:ATP600 4.4 5.3 1.0
O3A A:ATP600 4.5 5.3 1.0
OD2 A:ASP272 4.5 10.0 1.0
O2G A:ATP600 4.7 5.3 1.0
CG A:ASP272 4.7 10.0 1.0
PA A:ATP600 4.8 5.3 1.0

Magnesium binding site 2 out of 5 in 8j0s

Go back to Magnesium Binding Sites List in 8j0s
Magnesium binding site 2 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:20.0
occ:1.00
 O3G B:ATP600 2.0 15.4 1.0
OG1 B:THR179 2.0 17.9 1.0
O2B B:ATP600 2.3 15.4 1.0
CB B:THR179 3.3 17.9 1.0
PG B:ATP600 3.4 15.4 1.0
PB B:ATP600 3.5 15.4 1.0
OD1 B:ASP272 3.5 13.5 1.0
O3B B:ATP600 3.7 15.4 1.0
OE1 B:GLN211 3.8 13.1 1.0
CG2 B:THR179 4.0 17.9 1.0
OD2 B:ASP272 4.1 13.5 1.0
CG B:ASP272 4.2 13.5 1.0
O1G B:ATP600 4.3 15.4 1.0
N B:THR179 4.3 17.9 1.0
O2G B:ATP600 4.3 15.4 1.0
O1B B:ATP600 4.4 15.4 1.0
CA B:THR179 4.4 17.9 1.0
O1A B:ATP600 4.4 15.4 1.0
O3A B:ATP600 4.7 15.4 1.0
CD B:GLN211 4.7 13.1 1.0
PA B:ATP600 4.9 15.4 1.0

Magnesium binding site 3 out of 5 in 8j0s

Go back to Magnesium Binding Sites List in 8j0s
Magnesium binding site 3 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:11.3
occ:1.00
 O2B C:ATP600 1.9 0.0 1.0
OG1 C:THR179 2.0 12.0 1.0
O1G C:ATP600 2.3 0.0 1.0
CB C:THR179 3.2 12.0 1.0
PB C:ATP600 3.2 0.0 1.0
PG C:ATP600 3.3 0.0 1.0
O2G C:ATP600 3.6 0.0 1.0
O3B C:ATP600 3.7 0.0 1.0
CG2 C:THR179 4.0 12.0 1.0
O1B C:ATP600 4.0 0.0 1.0
OD1 C:ASP272 4.0 12.4 1.0
N C:THR179 4.2 12.0 1.0
CA C:THR179 4.3 12.0 1.0
O1A C:ATP600 4.3 0.0 1.0
OD2 C:ASP272 4.4 12.4 1.0
O3A C:ATP600 4.4 0.0 1.0
CG C:ASP272 4.6 12.4 1.0
O3G C:ATP600 4.7 0.0 1.0
PA C:ATP600 4.7 0.0 1.0
O2A C:ATP600 4.8 0.0 1.0

Magnesium binding site 4 out of 5 in 8j0s

Go back to Magnesium Binding Sites List in 8j0s
Magnesium binding site 4 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:15.4
occ:1.00
 O1B D:ADP600 1.8 8.0 1.0
OG1 D:THR178 2.0 15.9 1.0
PB D:ADP600 3.1 8.0 1.0
CB D:THR178 3.4 15.9 1.0
OE1 D:GLU203 3.4 16.4 1.0
O2B D:ADP600 3.5 8.0 1.0
NH1 D:ARG204 3.7 14.6 1.0
N D:THR178 3.9 15.9 1.0
CA D:THR178 4.1 15.9 1.0
O3A D:ADP600 4.1 8.0 1.0
CD D:GLU203 4.2 16.4 1.0
O3B D:ADP600 4.2 8.0 1.0
OD1 D:ASP265 4.2 13.3 1.0
OE1 D:GLU207 4.2 17.7 1.0
CG2 D:THR178 4.4 15.9 1.0
OD2 D:ASP265 4.5 13.3 1.0
ND2 D:ASN266 4.5 12.8 1.0
CE D:LYS177 4.5 13.3 1.0
CB D:LYS177 4.5 13.3 1.0
O1A D:ADP600 4.5 8.0 1.0
OE2 D:GLU203 4.6 16.4 1.0
OE2 D:GLU207 4.6 17.7 1.0
CG D:ASP265 4.7 13.3 1.0
C D:LYS177 4.8 13.3 1.0
CD D:GLU207 4.9 17.7 1.0
PA D:ADP600 4.9 8.0 1.0
NZ D:LYS177 4.9 13.3 1.0
CZ D:ARG204 4.9 14.6 1.0

Magnesium binding site 5 out of 5 in 8j0s

Go back to Magnesium Binding Sites List in 8j0s
Magnesium binding site 5 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in Complex with Bedaquiline(Bdq) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:11.7
occ:1.00
 OG1 F:THR178 2.0 10.2 1.0
O1B F:ADP600 2.7 5.3 1.0
O1A F:ADP600 2.8 5.3 1.0
CB F:THR178 3.3 10.2 1.0
OE1 F:GLU203 3.4 11.6 1.0
NH1 F:ARG204 3.6 11.8 1.0
PB F:ADP600 3.8 5.3 1.0
PA F:ADP600 3.9 5.3 1.0
OE2 F:GLU207 4.0 13.4 1.0
O3A F:ADP600 4.1 5.3 1.0
OE1 F:GLU207 4.1 13.4 1.0
O2B F:ADP600 4.1 5.3 1.0
CG2 F:THR178 4.2 10.2 1.0
N F:THR178 4.2 10.2 1.0
CA F:THR178 4.3 10.2 1.0
CD F:GLU203 4.3 11.6 1.0
CD F:GLU207 4.5 13.4 1.0
O2A F:ADP600 4.5 5.3 1.0
OD1 F:ASP265 4.6 10.9 1.0
OD2 F:ASP265 4.7 10.9 1.0
OE2 F:GLU203 4.9 11.6 1.0
CZ F:ARG204 4.9 11.8 1.0
ND2 F:ASN266 4.9 10.0 1.0

Reference:

Y.Zhang, Y.Lai, F.Liu, Z.Rao, H.Gong. Structure of Mycobacterium Tuberculosis Atp Synthase To Be Published.
Page generated: Fri Oct 4 11:27:41 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy