Magnesium in PDB 8j0t: Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form

All present enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form:
7.1.2.2;

The binding sites of Magnesium atom in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form (pdb code 8j0t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form, PDB code: 8j0t:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:43.0 occ:1.00 OG1 A:THR179 2.0 45.4 1.0 O1B A:ATP600 2.0 23.4 1.0 O1G A:ATP600 2.5 23.4 1.0 CB A:THR179 3.2 45.4 1.0 PB A:ATP600 3.4 23.4 1.0 PG A:ATP600 3.5 23.4 1.0 O3G A:ATP600 3.6 23.4 1.0 O3B A:ATP600 3.9 23.4 1.0 CG2 A:THR179 3.9 45.4 1.0 O2B A:ATP600 4.1 23.4 1.0 OD1 A:ASP272 4.2 42.6 1.0 O2A A:ATP600 4.2 23.4 1.0 CA A:THR179 4.4 45.4 1.0 N A:THR179 4.4 45.4 1.0 O3A A:ATP600 4.6 23.4 1.0 OD2 A:ASP272 4.7 42.6 1.0 PA A:ATP600 4.8 23.4 1.0 CG A:ASP272 4.8 42.6 1.0 O2G A:ATP600 4.9 23.4 1.0 OD2 A:ASP273 4.9 44.1 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:59.3 occ:1.00 OG1 B:THR179 2.0 54.6 1.0 O1B B:ATP600 2.1 32.0 1.0 CB B:THR179 2.9 54.6 1.0 O1G B:ATP600 3.0 32.0 1.0 O3G B:ATP600 3.4 32.0 1.0 CG2 B:THR179 3.4 54.6 1.0 PB B:ATP600 3.5 32.0 1.0 PG B:ATP600 3.6 32.0 1.0 O2A B:ATP600 3.6 32.0 1.0 OE1 B:GLN211 3.8 48.1 1.0 O3B B:ATP600 4.0 32.0 1.0 CG2 B:THR215 4.2 49.9 1.0 CA B:THR179 4.3 54.6 1.0 PA B:ATP600 4.4 32.0 1.0 OD1 B:ASP272 4.5 45.4 1.0 O3A B:ATP600 4.5 32.0 1.0 N B:THR179 4.5 54.6 1.0 O2B B:ATP600 4.6 32.0 1.0 O1A B:ATP600 4.8 32.0 1.0 OD2 B:ASP272 4.8 45.4 1.0 CD B:GLN211 5.0 48.1 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:54.7 occ:1.00 O1B C:ATP600 1.9 25.9 1.0 OG1 C:THR179 2.0 48.4 1.0 O1G C:ATP600 2.4 25.9 1.0 CB C:THR179 3.2 48.4 1.0 PB C:ATP600 3.2 25.9 1.0 PG C:ATP600 3.4 25.9 1.0 O3G C:ATP600 3.6 25.9 1.0 O3B C:ATP600 3.8 25.9 1.0 CG2 C:THR179 3.9 48.4 1.0 O2B C:ATP600 4.0 25.9 1.0 OD1 C:ASP272 4.2 43.8 1.0 O2A C:ATP600 4.2 25.9 1.0 N C:THR179 4.3 48.4 1.0 CA C:THR179 4.3 48.4 1.0 O3A C:ATP600 4.4 25.9 1.0 PA C:ATP600 4.7 25.9 1.0 OD2 C:ASP272 4.7 43.8 1.0 O2G C:ATP600 4.7 25.9 1.0 CG C:ASP272 4.8 43.8 1.0 O1A C:ATP600 4.9 25.9 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:49.3 occ:1.00 OG1 D:THR178 2.0 50.0 1.0 O3B D:ADP600 2.1 18.3 1.0 CB D:THR178 3.3 50.0 1.0 PB D:ADP600 3.4 18.3 1.0 OE1 D:GLU203 3.7 49.8 1.0 ND2 D:ASN266 3.9 44.8 1.0 N D:THR178 3.9 50.0 1.0 NH1 D:ARG204 3.9 46.9 1.0 O2B D:ADP600 4.0 18.3 1.0 CA D:THR178 4.1 50.0 1.0 O1B D:ADP600 4.1 18.3 1.0 OE1 D:GLU207 4.2 51.1 1.0 OD1 D:ASP265 4.2 46.0 1.0 CD D:GLU203 4.3 49.8 1.0 CG2 D:THR178 4.3 50.0 1.0 OD2 D:ASP265 4.4 46.0 1.0 OE2 D:GLU207 4.4 51.1 1.0 O3A D:ADP600 4.5 18.3 1.0 O2A D:ADP600 4.6 18.3 1.0 CG D:ASP265 4.7 46.0 1.0 CB D:LYS177 4.7 45.6 1.0 OE2 D:GLU203 4.7 49.8 1.0 CD D:GLU207 4.7 51.1 1.0 NH1 C:ARG376 4.7 45.7 1.0 CE D:LYS177 4.8 45.6 1.0 C D:LYS177 4.9 45.6 1.0 CG D:GLU203 4.9 49.8 1.0 PA D:ADP600 4.9 18.3 1.0 CG D:ASN266 5.0 44.8 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Mycobacterium Tuberculosis Atp Synthase in the Apo-Form within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:47.9 occ:1.00 OG1 F:THR178 2.0 47.4 1.0 O3B F:ADP600 2.1 20.6 1.0 PB F:ADP600 3.3 20.6 1.0 CB F:THR178 3.4 47.4 1.0 OE1 F:GLU203 3.7 48.7 1.0 O2B F:ADP600 3.8 20.6 1.0 O1B F:ADP600 3.9 20.6 1.0 N F:THR178 4.0 47.4 1.0 OD1 F:ASP265 4.1 42.8 1.0 NH1 F:ARG204 4.2 48.1 1.0 OE2 F:GLU207 4.2 51.4 1.0 CD F:GLU203 4.2 48.7 1.0 CA F:THR178 4.2 47.4 1.0 CG2 F:THR178 4.3 47.4 1.0 OE1 F:GLU207 4.4 51.4 1.0 OD2 F:ASP265 4.4 42.8 1.0 ND2 F:ASN266 4.5 43.1 1.0 CE F:LYS177 4.5 42.7 1.0 O3A F:ADP600 4.5 20.6 1.0 CG F:ASP265 4.6 42.8 1.0 CB F:LYS177 4.6 42.7 1.0 CD F:GLU207 4.7 51.4 1.0 OE2 F:GLU203 4.7 48.7 1.0 O2A F:ADP600 4.8 20.6 1.0 CG F:GLU203 4.8 48.7 1.0 C F:LYS177 4.9 42.7 1.0 NZ F:LYS177 4.9 42.7 1.0 PA F:ADP600 5.0 20.6 1.0

Y.Zhang, Y.Lai, F.Liu, Z.Rao, H.Gong. Structure of Mycobacterium Tuberculosis Atp Synthase To Be Published.