Magnesium in PDB 8j1j: Cryo-Em Structure of the ASCAS12F-Yham-SGRNAS3-5V7-Target Dna

The structure of Cryo-Em Structure of the ASCAS12F-Yham-SGRNAS3-5V7-Target Dna also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of the ASCAS12F-Yham-SGRNAS3-5V7-Target Dna (pdb code 8j1j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the ASCAS12F-Yham-SGRNAS3-5V7-Target Dna, PDB code: 8j1j:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the ASCAS12F-Yham-SGRNAS3-5V7-Target Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the ASCAS12F-Yham-SGRNAS3-5V7-Target Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:13.5 occ:1.00 O4 C:U-5 3.9 52.9 1.0 O6 C:G-4 4.2 59.5 1.0 O4 C:U-87 4.3 61.3 1.0 C4 C:U-5 4.6 49.6 1.0 N6 C:A-3 4.6 51.9 1.0 C5 C:U-5 4.9 50.4 1.0 O4 C:U-86 4.9 56.5 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the ASCAS12F-Yham-SGRNAS3-5V7-Target Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the ASCAS12F-Yham-SGRNAS3-5V7-Target Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg102 b:25.9 occ:1.00 O6 C:G-89 4.4 56.4 1.0 O6 C:G-83 4.7 50.9 1.0 N6 C:A-84 4.7 52.6 1.0 N7 C:A-84 4.7 53.2 1.0

T.Hino, N.S.Omura, R.Nakagawa, T.Togashi, N.S.Takeda, T.Hiramoto, S.Tasaka, H.Hirano, T.Tokuyama, H.Uosaki, H.Ishiguro, H.Yamano, Y.Ozaki, D.Motooka, H.Mori, Y.Kirita, Y.Kise, Y.Itoh, S.Matoba, H.Aburatani, N.Yachie, V.Siksnys, T.Ohmori, A.Hoshino, O.Nureki. Minimal and Most Efficient Genome Editing Cas Enzyme To Be Published.