Magnesium in PDB 8j1z: The Global Structure of PRE50S Related to Dbpa in STATE3

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210;

Binding sites:

The binding sites of Magnesium atom in the The Global Structure of PRE50S Related to Dbpa in STATE3 (pdb code 8j1z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 210 binding sites of Magnesium where determined in the The Global Structure of PRE50S Related to Dbpa in STATE3, PDB code: 8j1z:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 210 in the The Global Structure of PRE50S Related to Dbpa in STATE3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Global Structure of PRE50S Related to Dbpa in STATE3 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg6001 b:45.2 occ:1.00 O6 a:G474 3.9 50.6 1.0 O6 a:G30 4.0 47.5 1.0 O4 a:U29 4.2 46.1 1.0 O6 a:G473 4.3 50.2 1.0 OP2 a:A447 4.3 48.3 1.0 N4 a:C31 4.3 49.6 1.0 C5 a:U29 4.3 46.1 1.0 OP2 a:A28 4.4 45.4 1.0 C4 a:U29 4.5 46.1 1.0 OP2 a:U29 4.6 46.1 1.0

Magnesium binding site 2 out of 210 in the The Global Structure of PRE50S Related to Dbpa in STATE3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Global Structure of PRE50S Related to Dbpa in STATE3 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg6002 b:50.9 occ:1.00 OP2 a:U120 2.0 54.1 1.0 P a:U120 3.4 54.1 1.0 O6 a:G122 3.9 53.0 1.0 O3' a:A119 4.0 50.4 1.0 O6 a:G123 4.2 50.2 1.0 OP1 a:U120 4.2 54.1 1.0 N7 a:G122 4.2 53.0 1.0 OP1 a:G121 4.3 56.9 1.0 O5' a:U120 4.4 54.1 1.0 N7 a:G121 4.5 56.9 1.0 C5' a:U120 4.6 54.1 1.0 OP2 a:G122 4.6 53.0 1.0 C6 a:G122 4.7 53.0 1.0 C5 a:G122 4.8 53.0 1.0 C3' a:U120 4.8 54.1 1.0 C5 a:G121 4.9 56.9 1.0 N7 a:G123 5.0 50.2 1.0 C8 a:G121 5.0 56.9 1.0

Magnesium binding site 3 out of 210 in the The Global Structure of PRE50S Related to Dbpa in STATE3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Global Structure of PRE50S Related to Dbpa in STATE3 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg6003 b:51.2 occ:1.00 OP1 a:U120 2.0 54.1 1.0 P a:U120 3.4 54.1 1.0 OP2 a:G123 3.9 50.2 1.0 O6 a:G124 4.0 49.2 1.0 O5' a:U120 4.1 54.1 1.0 OP2 a:U120 4.1 54.1 1.0 N7 a:G123 4.3 50.2 1.0 C5' a:U120 4.4 54.1 1.0 N7 a:G124 4.5 49.2 1.0 O3' a:A119 4.5 50.4 1.0 OP2 a:G122 4.7 53.0 1.0 C3' a:A119 4.7 50.4 1.0 C8 a:G123 4.8 50.2 1.0 C6 a:G124 4.9 49.2 1.0

Magnesium binding site 4 out of 210 in the The Global Structure of PRE50S Related to Dbpa in STATE3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Global Structure of PRE50S Related to Dbpa in STATE3 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg6004 b:62.7 occ:1.00 OP2 a:A218 1.9 62.4 1.0 P a:A218 3.3 62.4 1.0 O5' a:A218 3.9 62.4 1.0 OP1 a:A218 4.1 62.4 1.0 N6 a:A219 4.1 65.0 1.0 O6 a:G220 4.2 67.2 1.0 N7 a:A218 4.2 62.4 1.0 N7 a:A219 4.3 65.0 1.0 C8 a:A218 4.3 62.4 1.0 OP1 a:A428 4.4 68.9 1.0 O5' a:A217 4.4 61.7 1.0 O3' a:A217 4.4 61.7 1.0 OP2 a:U427 4.6 70.0 1.0 C3' a:A217 4.6 61.7 1.0 OP1 a:A217 4.6 61.7 1.0 OP2 a:A217 4.7 61.7 1.0 OP1 a:U427 4.7 70.0 1.0 P a:A217 4.8 61.7 1.0 C5' a:A217 5.0 61.7 1.0

Magnesium binding site 5 out of 210 in the The Global Structure of PRE50S Related to Dbpa in STATE3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Global Structure of PRE50S Related to Dbpa in STATE3 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg6005 b:64.0 occ:1.00 OP1 a:U419 2.1 68.9 1.0 P a:U419 3.5 68.9 1.0 O3' a:C418 3.9 70.6 1.0 C5' a:U419 4.1 68.9 1.0 N7 a:G230 4.1 74.0 1.0 O5' a:U419 4.2 68.9 1.0 OP2 a:U419 4.6 68.9 1.0 C8 a:G230 4.7 74.0 1.0

Magnesium binding site 6 out of 210 in the The Global Structure of PRE50S Related to Dbpa in STATE3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Global Structure of PRE50S Related to Dbpa in STATE3 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg6006 b:50.4 occ:1.00 OP2 a:G450 2.6 46.1 1.0 OP2 a:G452 3.1 48.2 1.0 O e:GLY81 3.8 50.0 1.0 O e:SER80 3.8 49.5 1.0 P a:G450 3.9 46.1 1.0 C e:SER80 4.2 49.5 1.0 OP2 a:U451 4.3 48.8 1.0 CA e:SER80 4.4 49.5 1.0 P a:G452 4.4 48.2 1.0 OP1 a:G450 4.5 46.1 1.0 O5' a:G450 4.6 46.1 1.0 OP1 a:A449 4.7 45.5 1.0 CG2 e:VAL52 4.7 52.8 1.0 C e:GLY81 4.8 50.0 1.0 OP1 a:G452 4.8 48.2 1.0 OP2 a:A449 4.9 45.5 1.0 C5' a:U451 5.0 48.8 1.0 N e:GLY81 5.0 50.0 1.0

Magnesium binding site 7 out of 210 in the The Global Structure of PRE50S Related to Dbpa in STATE3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Global Structure of PRE50S Related to Dbpa in STATE3 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg6007 b:43.3 occ:1.00 O6 a:G450 1.9 46.1 1.0 OP1 a:A453 2.0 47.9 1.0 C6 a:G450 3.1 46.1 1.0 P a:A453 3.4 47.9 1.0 O a:HOH6313 3.6 49.1 1.0 C5 a:G450 3.8 46.1 1.0 N7 a:G450 3.9 46.1 1.0 OP2 a:A453 4.1 47.9 1.0 N7 a:A449 4.1 45.5 1.0 O5' a:A453 4.1 47.9 1.0 N1 a:G450 4.2 46.1 1.0 OP1 a:A454 4.2 48.8 1.0 C5' a:A453 4.3 47.9 1.0 OP2 a:A449 4.4 45.5 1.0 O3' a:G452 4.5 48.2 1.0 N6 a:A449 4.6 45.5 1.0 C5' a:U448 4.8 46.9 1.0 C5 a:A449 4.9 45.5 1.0 C8 a:A449 4.9 45.5 1.0 OP2 a:A454 5.0 48.8 1.0

Magnesium binding site 8 out of 210 in the The Global Structure of PRE50S Related to Dbpa in STATE3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Global Structure of PRE50S Related to Dbpa in STATE3 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg6008 b:47.6 occ:1.00 OP1 a:A526 1.9 49.4 1.0 OP1 a:C527 2.0 50.9 1.0 P a:A526 3.3 49.4 1.0 P a:C527 3.4 50.9 1.0 O5' a:A526 3.9 49.4 1.0 O5' a:C527 4.0 50.9 1.0 OP1 a:A528 4.0 50.6 1.0 OP2 a:A526 4.1 49.4 1.0 OP2 a:C527 4.2 50.9 1.0 C5' a:C527 4.4 50.9 1.0 O3' a:U525 4.4 49.2 1.0 O3' a:A526 4.5 49.4 1.0 C5' a:A526 4.5 49.4 1.0 C3' a:C527 4.7 50.9 1.0 C3' a:A526 4.8 49.4 1.0

Magnesium binding site 9 out of 210 in the The Global Structure of PRE50S Related to Dbpa in STATE3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of The Global Structure of PRE50S Related to Dbpa in STATE3 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg6009 b:54.0 occ:1.00 OP2 a:C560 4.0 48.5 1.0 O a:HOH6314 4.0 56.9 1.0 OP1 a:A1008 4.0 54.2 1.0 OP1 a:C560 4.1 48.5 1.0 OP1 a:G2038 4.2 53.0 1.0 OP1 a:G559 4.4 49.2 1.0 P a:C560 4.5 48.5 1.0

Magnesium binding site 10 out of 210 in the The Global Structure of PRE50S Related to Dbpa in STATE3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of The Global Structure of PRE50S Related to Dbpa in STATE3 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg6010 b:52.9 occ:1.00 OP1 a:U567 2.0 54.1 1.0 P a:U567 3.3 54.1 1.0 O3' a:U566 3.5 51.5 1.0 O4 a:U810 3.9 48.4 1.0 O5' a:U567 4.0 54.1 1.0 OP2 a:G809 4.0 49.8 1.0 C5' a:U567 4.1 54.1 1.0 N7 a:G809 4.1 49.8 1.0 O k:HOH215 4.2 60.8 1.0 O a:HOH6379 4.2 59.6 1.0 OP2 a:G808 4.4 53.7 1.0 OP2 a:U567 4.5 54.1 1.0 C8 a:G809 4.6 49.8 1.0 NZ k:LYS29 4.7 51.9 1.0 C4 a:U810 4.8 48.4 1.0 ND1 k:HIS35 4.9 56.6 1.0 C3' a:U566 4.9 51.5 1.0

T.Yu, J.Jiang, Q.Yu, X.Li, W.Dong, F.Zeng. Ptc Remodeling in PRE50S Intermediates: Insights Into the Role of Dead-Box Rna Helicase Dbpa To Be Published.