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Magnesium in PDB 8j7r: Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused)

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused) (pdb code 8j7r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused), PDB code: 8j7r:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8j7r

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Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg801

b:150.0
occ:1.00
N7 C:G728 3.9 157.9 1.0
O6 C:G728 4.1 128.8 1.0
O6 C:G729 4.4 163.0 1.0
OP2 C:U692 4.4 140.0 1.0
OP1 C:U692 4.4 158.2 1.0
C5 C:G728 4.7 127.2 1.0
C6 C:G728 4.8 128.7 1.0
C8 C:G728 4.9 162.1 1.0

Magnesium binding site 2 out of 3 in 8j7r

Go back to Magnesium Binding Sites List in 8j7r
Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg802

b:152.6
occ:1.00
OP2 C:G729 3.8 154.4 1.0
OP2 C:G730 4.2 184.6 1.0
N7 C:G730 4.2 136.4 1.0
OP2 C:A691 4.5 133.8 1.0
O5' C:G729 4.7 191.3 1.0
P C:G729 4.8 186.0 1.0
OP1 C:A691 4.9 211.1 1.0
C8 C:G730 5.0 149.3 1.0

Magnesium binding site 3 out of 3 in 8j7r

Go back to Magnesium Binding Sites List in 8j7r
Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg803

b:132.6
occ:1.00
O4 C:U703 3.8 155.1 1.0
O6 C:G702 4.0 138.6 1.0
N7 C:G701 4.0 126.1 1.0
N7 C:G702 4.1 103.7 1.0
O6 C:G701 4.2 198.2 1.0
C5 C:G701 4.6 111.8 1.0
C6 C:G701 4.6 141.8 1.0
OP2 C:A700 4.6 174.7 1.0
C4 C:U703 4.7 134.2 1.0
C6 C:G702 4.8 112.4 1.0
C5 C:G702 4.8 89.8 1.0
C8 C:G701 4.9 148.1 1.0

Reference:

S.Imai, H.Suzuki, Y.Fujiyoshi, I.Shimada. Dynamically Regulated Two-Site Interaction of Viral Rna to Capture Host Translation Initiation Factor To Be Published.
Page generated: Thu Dec 28 09:31:54 2023

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