Atomistry » Magnesium » PDB 8j2f-8jeb » 8j7r
Atomistry »
  Magnesium »
    PDB 8j2f-8jeb »
      8j7r »

Magnesium in PDB 8j7r: Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused)

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused) (pdb code 8j7r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused), PDB code: 8j7r:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8j7r

Go back to Magnesium Binding Sites List in 8j7r
Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg801

b:150.0
occ:1.00
N7 C:G728 3.9 157.9 1.0
O6 C:G728 4.1 128.8 1.0
O6 C:G729 4.4 163.0 1.0
OP2 C:U692 4.4 140.0 1.0
OP1 C:U692 4.4 158.2 1.0
C5 C:G728 4.7 127.2 1.0
C6 C:G728 4.8 128.7 1.0
C8 C:G728 4.9 162.1 1.0

Magnesium binding site 2 out of 3 in 8j7r

Go back to Magnesium Binding Sites List in 8j7r
Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg802

b:152.6
occ:1.00
OP2 C:G729 3.8 154.4 1.0
OP2 C:G730 4.2 184.6 1.0
N7 C:G730 4.2 136.4 1.0
OP2 C:A691 4.5 133.8 1.0
O5' C:G729 4.7 191.3 1.0
P C:G729 4.8 186.0 1.0
OP1 C:A691 4.9 211.1 1.0
C8 C:G730 5.0 149.3 1.0

Magnesium binding site 3 out of 3 in 8j7r

Go back to Magnesium Binding Sites List in 8j7r
Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (J-K-St/EIF4G Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg803

b:132.6
occ:1.00
O4 C:U703 3.8 155.1 1.0
O6 C:G702 4.0 138.6 1.0
N7 C:G701 4.0 126.1 1.0
N7 C:G702 4.1 103.7 1.0
O6 C:G701 4.2 198.2 1.0
C5 C:G701 4.6 111.8 1.0
C6 C:G701 4.6 141.8 1.0
OP2 C:A700 4.6 174.7 1.0
C4 C:U703 4.7 134.2 1.0
C6 C:G702 4.8 112.4 1.0
C5 C:G702 4.8 89.8 1.0
C8 C:G701 4.9 148.1 1.0

Reference:

S.Imai, H.Suzuki, Y.Fujiyoshi, I.Shimada. Dynamically Regulated Two-Site Interaction of Viral Rna to Capture Host Translation Initiation Factor To Be Published.
Page generated: Fri Oct 4 12:05:26 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy