Magnesium in PDB 8j7z: Structure of Fcp Trimer in Cyclotella Meneghiniana

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 33;

Binding sites:

The binding sites of Magnesium atom in the Structure of Fcp Trimer in Cyclotella Meneghiniana (pdb code 8j7z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 33 binding sites of Magnesium where determined in the Structure of Fcp Trimer in Cyclotella Meneghiniana, PDB code: 8j7z:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 33 in the Structure of Fcp Trimer in Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Fcp Trimer in Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg308 b:90.0 occ:1.00 MG A:CLA308 0.0 90.0 1.0 NB A:CLA308 2.0 90.0 1.0 ND A:CLA308 2.0 90.0 1.0 NC A:CLA308 2.1 90.0 1.0 NA A:CLA308 2.1 90.0 1.0 C4D A:CLA308 2.9 90.0 1.0 C1B A:CLA308 3.0 90.0 1.0 C4A A:CLA308 3.0 90.0 1.0 C4B A:CLA308 3.1 90.0 1.0 C1C A:CLA308 3.1 90.0 1.0 C4C A:CLA308 3.1 90.0 1.0 C1A A:CLA308 3.2 90.0 1.0 C1D A:CLA308 3.2 90.0 1.0 CHB A:CLA308 3.4 90.0 1.0 CHC A:CLA308 3.4 90.0 1.0 CHA A:CLA308 3.5 90.0 1.0 CHD A:CLA308 3.5 90.0 1.0 C3D A:CLA308 4.3 90.0 1.0 C2B A:CLA308 4.3 90.0 1.0 C3B A:CLA308 4.3 90.0 1.0 C2C A:CLA308 4.3 90.0 1.0 C2D A:CLA308 4.4 90.0 1.0 C3C A:CLA308 4.4 90.0 1.0 C3A A:CLA308 4.4 90.0 1.0 C2A A:CLA308 4.5 90.0 1.0 O A:PRO39 4.6 89.3 1.0 O2 A:A86301 4.8 90.0 1.0 CBD A:CLA308 4.9 90.0 1.0 CBA A:CLA308 5.0 90.0 1.0

Magnesium binding site 2 out of 33 in the Structure of Fcp Trimer in Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Fcp Trimer in Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg309 b:90.0 occ:1.00 MG A:CLA309 0.0 90.0 1.0 NB A:CLA309 2.0 90.0 1.0 ND A:CLA309 2.0 90.0 1.0 NC A:CLA309 2.1 90.0 1.0 NA A:CLA309 2.1 90.0 1.0 C4D A:CLA309 2.9 90.0 1.0 C1B A:CLA309 3.0 90.0 1.0 OE2 A:GLU66 3.0 85.2 1.0 C4A A:CLA309 3.0 90.0 1.0 C4B A:CLA309 3.1 90.0 1.0 C1C A:CLA309 3.1 90.0 1.0 C4C A:CLA309 3.1 90.0 1.0 C1A A:CLA309 3.1 90.0 1.0 C1D A:CLA309 3.2 90.0 1.0 CHB A:CLA309 3.4 90.0 1.0 CHC A:CLA309 3.4 90.0 1.0 CHA A:CLA309 3.5 90.0 1.0 CD A:GLU66 3.5 85.2 1.0 CHD A:CLA309 3.5 90.0 1.0 O2A A:CLA309 3.8 90.0 1.0 OE1 A:GLU66 4.1 85.2 1.0 NE A:ARG179 4.1 85.1 1.0 CG A:GLU66 4.2 85.2 1.0 C3D A:CLA309 4.3 90.0 1.0 C2B A:CLA309 4.3 90.0 1.0 C3B A:CLA309 4.3 90.0 1.0 C2C A:CLA309 4.3 90.0 1.0 C2D A:CLA309 4.4 90.0 1.0 C3C A:CLA309 4.4 90.0 1.0 NH2 A:ARG179 4.4 85.1 1.0 C3A A:CLA309 4.4 90.0 1.0 C2A A:CLA309 4.5 90.0 1.0 C1 A:CLA309 4.5 90.0 1.0 CZ A:ARG179 4.6 85.1 1.0 C37 A:A86303 4.8 90.0 1.0 CGA A:CLA309 4.8 90.0 1.0 C4 A:CLA309 4.8 90.0 1.0 CBD A:CLA309 4.9 90.0 1.0 CD A:ARG179 5.0 85.1 1.0 CG A:ARG179 5.0 85.1 1.0

Magnesium binding site 3 out of 33 in the Structure of Fcp Trimer in Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Fcp Trimer in Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg310 b:90.0 occ:1.00 MG A:KC2310 0.0 90.0 1.0 ND A:KC2310 2.0 90.0 1.0 NB A:KC2310 2.0 90.0 1.0 NC A:KC2310 2.1 90.0 1.0 NA A:KC2310 2.1 90.0 1.0 NE2 A:HIS69 2.9 84.5 1.0 C4D A:KC2310 2.9 90.0 1.0 C1B A:KC2310 3.0 90.0 1.0 C4B A:KC2310 3.0 90.0 1.0 C1D A:KC2310 3.0 90.0 1.0 C4C A:KC2310 3.1 90.0 1.0 C4A A:KC2310 3.1 90.0 1.0 C1C A:KC2310 3.1 90.0 1.0 C1A A:KC2310 3.1 90.0 1.0 CHB A:KC2310 3.4 90.0 1.0 CHA A:KC2310 3.5 90.0 1.0 CHC A:KC2310 3.5 90.0 1.0 CHD A:KC2310 3.5 90.0 1.0 C9 A:CLA313 3.6 90.0 1.0 CE1 A:HIS69 3.6 84.5 1.0 C8 A:CLA313 3.7 90.0 1.0 CD2 A:HIS69 3.9 84.5 1.0 C3D A:KC2310 4.1 90.0 1.0 C2D A:KC2310 4.2 90.0 1.0 C2B A:KC2310 4.2 90.0 1.0 C3B A:KC2310 4.2 90.0 1.0 C10 A:CLA313 4.3 90.0 1.0 C2C A:KC2310 4.3 90.0 1.0 C3A A:KC2310 4.3 90.0 1.0 C3C A:KC2310 4.3 90.0 1.0 C2A A:KC2310 4.4 90.0 1.0 C24 A:A86306 4.7 90.0 1.0 ND1 A:HIS69 4.8 84.5 1.0 C11 A:CLA313 4.9 90.0 1.0 CBD A:KC2310 4.9 90.0 1.0 CG A:HIS69 4.9 84.5 1.0 C7 A:CLA313 5.0 90.0 1.0 C2 A:A86306 5.0 90.0 1.0

Magnesium binding site 4 out of 33 in the Structure of Fcp Trimer in Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Fcp Trimer in Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg311 b:90.0 occ:1.00 MG A:CLA311 0.0 90.0 1.0 NB A:CLA311 2.0 90.0 1.0 ND A:CLA311 2.0 90.0 1.0 NC A:CLA311 2.1 90.0 1.0 NA A:CLA311 2.1 90.0 1.0 C4D A:CLA311 2.9 90.0 1.0 C1B A:CLA311 3.0 90.0 1.0 C4A A:CLA311 3.0 90.0 1.0 C4B A:CLA311 3.1 90.0 1.0 C1C A:CLA311 3.1 90.0 1.0 C4C A:CLA311 3.1 90.0 1.0 C1A A:CLA311 3.2 90.0 1.0 C1D A:CLA311 3.2 90.0 1.0 CHB A:CLA311 3.4 90.0 1.0 CHC A:CLA311 3.4 90.0 1.0 CHA A:CLA311 3.5 90.0 1.0 CHD A:CLA311 3.5 90.0 1.0 C2 A:CLA311 3.7 90.0 1.0 O2A A:CLA311 4.0 90.0 1.0 C1 A:CLA311 4.1 90.0 1.0 C3 A:CLA311 4.3 90.0 1.0 C3D A:CLA311 4.3 90.0 1.0 C2B A:CLA311 4.3 90.0 1.0 C3B A:CLA311 4.3 90.0 1.0 C2C A:CLA311 4.3 90.0 1.0 C2D A:CLA311 4.4 90.0 1.0 C3C A:CLA311 4.4 90.0 1.0 C3A A:CLA311 4.4 90.0 1.0 C2A A:CLA311 4.5 90.0 1.0 C5 A:CLA311 4.7 90.0 1.0 CA A:GLY79 4.7 85.6 1.0 OG1 A:THR83 4.7 88.8 1.0 C6 A:CLA311 4.8 90.0 1.0 CGA A:CLA311 4.9 90.0 1.0 CBD A:CLA311 4.9 90.0 1.0

Magnesium binding site 5 out of 33 in the Structure of Fcp Trimer in Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Fcp Trimer in Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg312 b:92.6 occ:1.00 MG A:KC2312 0.0 92.6 1.0 ND A:KC2312 2.0 92.6 1.0 NB A:KC2312 2.0 92.6 1.0 NC A:KC2312 2.1 92.6 1.0 NA A:KC2312 2.1 92.6 1.0 OE1 A:GLN123 2.9 91.2 1.0 C4D A:KC2312 2.9 92.6 1.0 C1B A:KC2312 3.0 92.6 1.0 C4B A:KC2312 3.0 92.6 1.0 C1D A:KC2312 3.0 92.6 1.0 C4A A:KC2312 3.1 92.6 1.0 C4C A:KC2312 3.1 92.6 1.0 C1C A:KC2312 3.1 92.6 1.0 C1A A:KC2312 3.1 92.6 1.0 CHB A:KC2312 3.4 92.6 1.0 CHA A:KC2312 3.5 92.6 1.0 CHC A:KC2312 3.5 92.6 1.0 CHD A:KC2312 3.5 92.6 1.0 CD A:GLN123 3.5 91.2 1.0 NE2 A:GLN123 3.7 91.2 1.0 C3D A:KC2312 4.1 92.6 1.0 C2D A:KC2312 4.2 92.6 1.0 C2B A:KC2312 4.2 92.6 1.0 C3B A:KC2312 4.2 92.6 1.0 C2C A:KC2312 4.3 92.6 1.0 C3A A:KC2312 4.3 92.6 1.0 C3C A:KC2312 4.3 92.6 1.0 C2A A:KC2312 4.4 92.6 1.0 CG A:GLN123 4.7 91.2 1.0 CB A:GLN123 4.9 91.2 1.0 CBD A:KC2312 4.9 92.6 1.0 C30 A:SQD318 5.0 96.2 1.0

Magnesium binding site 6 out of 33 in the Structure of Fcp Trimer in Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Fcp Trimer in Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg313 b:90.0 occ:1.00 MG A:CLA313 0.0 90.0 1.0 NB A:CLA313 2.0 90.0 1.0 ND A:CLA313 2.0 90.0 1.0 NC A:CLA313 2.1 90.0 1.0 NA A:CLA313 2.1 90.0 1.0 OE1 A:GLU132 2.9 90.2 1.0 C4D A:CLA313 2.9 90.0 1.0 C1B A:CLA313 3.0 90.0 1.0 C4A A:CLA313 3.0 90.0 1.0 C4B A:CLA313 3.1 90.0 1.0 C1C A:CLA313 3.1 90.0 1.0 C4C A:CLA313 3.1 90.0 1.0 C1A A:CLA313 3.2 90.0 1.0 C1D A:CLA313 3.2 90.0 1.0 OE2 A:GLU132 3.3 90.2 1.0 CHB A:CLA313 3.4 90.0 1.0 CHC A:CLA313 3.4 90.0 1.0 CD A:GLU132 3.5 90.2 1.0 CHA A:CLA313 3.5 90.0 1.0 CHD A:CLA313 3.5 90.0 1.0 C3D A:CLA313 4.3 90.0 1.0 C2B A:CLA313 4.3 90.0 1.0 C3B A:CLA313 4.3 90.0 1.0 C2C A:CLA313 4.3 90.0 1.0 C2D A:CLA313 4.4 90.0 1.0 C3C A:CLA313 4.4 90.0 1.0 CMD A:KC2310 4.4 90.0 1.0 C3A A:CLA313 4.4 90.0 1.0 C2A A:CLA313 4.5 90.0 1.0 CBA A:CLA313 4.9 90.0 1.0 CG A:GLU132 4.9 90.2 1.0 CBD A:CLA313 4.9 90.0 1.0

Magnesium binding site 7 out of 33 in the Structure of Fcp Trimer in Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Fcp Trimer in Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg314 b:90.0 occ:1.00 MG A:CLA314 0.0 90.0 1.0 NB A:CLA314 2.0 90.0 1.0 ND A:CLA314 2.0 90.0 1.0 NC A:CLA314 2.1 90.0 1.0 NA A:CLA314 2.1 90.0 1.0 C4D A:CLA314 2.9 90.0 1.0 OE2 A:GLU174 3.0 85.4 1.0 C1B A:CLA314 3.0 90.0 1.0 C4A A:CLA314 3.0 90.0 1.0 C4B A:CLA314 3.1 90.0 1.0 C1C A:CLA314 3.1 90.0 1.0 C4C A:CLA314 3.1 90.0 1.0 C1A A:CLA314 3.1 90.0 1.0 C1D A:CLA314 3.2 90.0 1.0 CHB A:CLA314 3.4 90.0 1.0 CHC A:CLA314 3.4 90.0 1.0 CHA A:CLA314 3.5 90.0 1.0 CHD A:CLA314 3.5 90.0 1.0 C26 A:A86304 3.6 90.0 1.0 CD A:GLU174 3.8 85.4 1.0 C29 A:A86304 4.1 90.0 1.0 C3D A:CLA314 4.3 90.0 1.0 C27 A:A86304 4.3 90.0 1.0 C2B A:CLA314 4.3 90.0 1.0 C3B A:CLA314 4.3 90.0 1.0 C2C A:CLA314 4.3 90.0 1.0 C2D A:CLA314 4.4 90.0 1.0 C3C A:CLA314 4.4 90.0 1.0 CG A:GLU174 4.4 85.4 1.0 C3A A:CLA314 4.4 90.0 1.0 C2A A:CLA314 4.5 90.0 1.0 C25 A:A86304 4.5 90.0 1.0 C24 A:A86304 4.6 90.0 1.0 OE1 A:GLU174 4.6 85.4 1.0 NE A:ARG71 4.6 83.6 1.0 NH2 A:ARG71 4.8 83.6 1.0 CB A:GLU174 4.8 85.4 1.0 CBD A:CLA314 4.9 90.0 1.0

Magnesium binding site 8 out of 33 in the Structure of Fcp Trimer in Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Fcp Trimer in Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg315 b:90.0 occ:1.00 MG A:KC1315 0.0 90.0 1.0 ND A:KC1315 2.0 90.0 1.0 NB A:KC1315 2.0 90.0 1.0 NC A:KC1315 2.0 90.0 1.0 NA A:KC1315 2.1 90.0 1.0 C4D A:KC1315 2.9 90.0 1.0 C1B A:KC1315 2.9 90.0 1.0 C4B A:KC1315 3.0 90.0 1.0 C1D A:KC1315 3.0 90.0 1.0 C4A A:KC1315 3.1 90.0 1.0 C1C A:KC1315 3.1 90.0 1.0 C4C A:KC1315 3.1 90.0 1.0 C1A A:KC1315 3.1 90.0 1.0 OD1 A:ASN177 3.1 85.6 1.0 CHB A:KC1315 3.4 90.0 1.0 CHC A:KC1315 3.4 90.0 1.0 CHA A:KC1315 3.5 90.0 1.0 CHD A:KC1315 3.5 90.0 1.0 ND2 A:ASN177 3.6 85.6 1.0 CG A:ASN177 3.6 85.6 1.0 C8 A:CLA308 3.9 90.0 1.0 C3D A:KC1315 4.1 90.0 1.0 C2D A:KC1315 4.1 90.0 1.0 C2B A:KC1315 4.2 90.0 1.0 C3B A:KC1315 4.2 90.0 1.0 C3A A:KC1315 4.3 90.0 1.0 C3C A:KC1315 4.3 90.0 1.0 C2C A:KC1315 4.3 90.0 1.0 C7 A:CLA308 4.3 90.0 1.0 C2A A:KC1315 4.3 90.0 1.0 C2 A:A86307 4.9 95.0 1.0 CBD A:KC1315 4.9 90.0 1.0 C24 A:A86307 4.9 95.0 1.0 C7 A:A86305 5.0 90.0 1.0 CB A:ASN177 5.0 85.6 1.0

Magnesium binding site 9 out of 33 in the Structure of Fcp Trimer in Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Fcp Trimer in Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg316 b:90.0 occ:1.00 MG A:CLA316 0.0 90.0 1.0 NB A:CLA316 2.0 90.0 1.0 ND A:CLA316 2.0 90.0 1.0 NC A:CLA316 2.1 90.0 1.0 NA A:CLA316 2.1 90.0 1.0 NE2 A:HIS191 2.9 88.2 1.0 C4D A:CLA316 2.9 90.0 1.0 C1B A:CLA316 3.0 90.0 1.0 C4A A:CLA316 3.0 90.0 1.0 C4B A:CLA316 3.1 90.0 1.0 C1C A:CLA316 3.1 90.0 1.0 C4C A:CLA316 3.1 90.0 1.0 C1D A:CLA316 3.2 90.0 1.0 C1A A:CLA316 3.2 90.0 1.0 CHB A:CLA316 3.4 90.0 1.0 CHC A:CLA316 3.4 90.0 1.0 CHA A:CLA316 3.5 90.0 1.0 CHD A:CLA316 3.5 90.0 1.0 CE1 A:HIS191 3.6 88.2 1.0 CD2 A:HIS191 3.9 88.2 1.0 C3D A:CLA316 4.3 90.0 1.0 C2B A:CLA316 4.3 90.0 1.0 C3B A:CLA316 4.3 90.0 1.0 C2C A:CLA316 4.3 90.0 1.0 C2D A:CLA316 4.4 90.0 1.0 C3C A:CLA316 4.4 90.0 1.0 C3A A:CLA316 4.4 90.0 1.0 C24 A:A86301 4.4 90.0 1.0 C2A A:CLA316 4.5 90.0 1.0 C2 A:A86301 4.6 90.0 1.0 ND1 A:HIS191 4.8 88.2 1.0 CBD A:CLA316 4.9 90.0 1.0 CG A:HIS191 5.0 88.2 1.0

Magnesium binding site 10 out of 33 in the Structure of Fcp Trimer in Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Fcp Trimer in Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg317 b:93.6 occ:1.00 MG A:CLA317 0.0 93.6 1.0 NB A:CLA317 2.0 93.6 1.0 ND A:CLA317 2.0 93.6 1.0 NC A:CLA317 2.1 93.6 1.0 NA A:CLA317 2.1 93.6 1.0 O A:PRO46 2.9 91.5 1.0 C4D A:CLA317 2.9 93.6 1.0 C1B A:CLA317 3.0 93.6 1.0 C4A A:CLA317 3.0 93.6 1.0 C4B A:CLA317 3.1 93.6 1.0 C1C A:CLA317 3.1 93.6 1.0 C4C A:CLA317 3.1 93.6 1.0 C1A A:CLA317 3.2 93.6 1.0 C1D A:CLA317 3.2 93.6 1.0 CHB A:CLA317 3.4 93.6 1.0 CHC A:CLA317 3.4 93.6 1.0 CHA A:CLA317 3.5 93.6 1.0 CHD A:CLA317 3.5 93.6 1.0 C A:PRO46 3.6 91.5 1.0 C1 A:CLA317 3.9 93.6 1.0 CA A:PRO46 3.9 91.5 1.0 C4 A:CLA317 4.1 93.6 1.0 C2 A:CLA317 4.1 93.6 1.0 C3 A:CLA317 4.2 93.6 1.0 C3D A:CLA317 4.3 93.6 1.0 CB A:PRO46 4.3 91.5 1.0 C2B A:CLA317 4.3 93.6 1.0 C3B A:CLA317 4.3 93.6 1.0 C2C A:CLA317 4.3 93.6 1.0 C2D A:CLA317 4.4 93.6 1.0 C3C A:CLA317 4.4 93.6 1.0 C3A A:CLA317 4.4 93.6 1.0 C2A A:CLA317 4.5 93.6 1.0 O2A A:CLA317 4.5 93.6 1.0 N A:PHE47 4.6 89.8 1.0 C6 A:CLA317 4.8 93.6 1.0 CBD A:CLA317 4.9 93.6 1.0 CGA A:CLA317 5.0 93.6 1.0

S.Zhao, L.Shen, X.Li, Q.Tao, Z.Li, C.Xu, C.Zhou, Y.Yang, M.Sang, G.Han, L.J.Yu, T.Kuang, J.R.Shen, W.Wang. Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana. Nat Commun V. 14 8164 2023.
ISSN: ESSN 2041-1723
PubMed: 38071196
DOI: 10.1038/S41467-023-44055-8